Wall clock time and date at job start Tue Mar 31 2020 05:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46976 * 2 1 4 4 C 1.50696 * 109.47089 * 180.02562 * 3 2 1 5 5 S 1.70624 * 124.52474 * 270.02453 * 4 3 2 6 6 C 1.75828 * 91.56226 * 179.97438 * 5 4 3 7 7 C 1.46586 * 125.45530 * 179.97438 * 6 5 4 8 8 O 1.21703 * 120.00024 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99782 * 0.02562 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72446 * 9 7 6 11 11 C 1.50703 * 109.47138 * 180.28062 * 10 9 7 12 12 H 1.08001 * 120.00037 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99824 * 180.02562 * 11 10 9 14 14 N 1.31522 * 119.99572 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 120.00297 * 359.97438 * 13 11 10 16 16 H 1.48498 * 109.47136 * 89.99858 * 15 13 11 17 17 H 1.48503 * 109.47098 * 209.99924 * 15 13 11 18 18 H 1.48504 * 109.46915 * 329.99778 * 15 13 11 19 19 C 1.36643 * 109.08762 * 0.24358 * 6 5 4 20 20 C 1.33815 * 124.52172 * 90.00297 * 4 3 2 21 21 C 1.50697 * 122.45246 * 359.97438 * 20 4 3 22 22 C 1.53001 * 109.47012 * 84.99512 * 21 20 4 23 23 H 1.08990 * 109.47349 * 59.99873 * 1 2 3 24 24 H 1.09007 * 109.46752 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47039 * 299.99569 * 1 2 3 26 26 H 1.09003 * 109.47039 * 240.00431 * 2 1 3 27 27 H 1.08998 * 109.47532 * 119.99904 * 2 1 3 28 28 H 1.09003 * 109.46885 * 60.00337 * 3 2 1 29 29 H 1.08998 * 109.46911 * 300.00284 * 3 2 1 30 30 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 31 31 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 32 32 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 33 33 H 0.97001 * 119.99511 * 179.97438 * 14 13 11 34 34 H 1.07995 * 123.35716 * 179.75353 * 19 6 5 35 35 H 1.08995 * 109.47437 * 205.00216 * 21 20 4 36 36 H 1.09005 * 109.46636 * 324.99895 * 21 20 4 37 37 H 1.08995 * 109.47594 * 300.00608 * 22 21 20 38 38 H 1.09000 * 109.46683 * 60.00804 * 22 21 20 39 39 H 1.09008 * 109.46912 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5469 1.4426 -0.0006 5 16 4.5145 1.4418 1.4047 6 6 5.9894 1.4416 0.4474 7 6 7.3527 1.4415 0.9860 8 8 8.3059 1.4418 0.2294 9 7 7.5505 1.4410 2.3192 10 6 8.9130 1.4348 2.8575 11 6 8.8582 1.4286 4.3635 12 1 7.9038 1.4297 4.8691 13 6 10.0263 1.4227 5.0959 14 7 9.9784 1.4178 6.4102 15 14 11.6770 1.4216 4.2214 16 1 12.1182 2.8213 3.9950 17 1 12.6802 0.7156 5.0585 18 1 11.5449 0.7268 2.9156 19 6 5.6612 1.4476 -0.8790 20 6 4.3048 1.4428 -1.1035 21 6 3.7148 1.4425 -2.4901 22 6 3.3988 2.8794 -2.9102 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6766 1.9564 -0.8900 30 1 6.7908 1.4404 2.9223 31 1 9.4372 0.5447 2.5094 32 1 9.4424 2.3246 2.5169 33 1 10.8003 1.4132 6.9254 34 1 6.3942 1.4526 -1.6721 35 1 4.4296 1.0085 -3.1891 36 1 2.7981 0.8527 -2.4948 37 1 2.6839 3.3135 -2.2112 38 1 4.3154 3.4692 -2.9056 39 1 2.9715 2.8791 -3.9131 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343895991.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:03 Heat of formation + Delta-G solvation = -39.036754 kcal Electronic energy + Delta-G solvation = -19128.322064 eV Core-core repulsion = 16161.307781 eV Total energy + Delta-G solvation = -2967.014283 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.40480 -38.43955 -35.07824 -34.34339 -32.77816 -32.35934 -30.19715 -28.37454 -26.53068 -24.24473 -23.48427 -21.71542 -21.55782 -20.09157 -18.72930 -17.90288 -16.77058 -16.16175 -15.25929 -14.97622 -14.84932 -14.66065 -14.27104 -14.04437 -13.85368 -13.70090 -13.11722 -12.94786 -12.74466 -12.36491 -12.33632 -12.16230 -11.93310 -11.69454 -11.52227 -11.32908 -11.16455 -10.99621 -10.96151 -10.78109 -10.58742 -9.98495 -9.54423 -9.45079 -8.80257 -8.60175 -8.39859 -8.15241 -6.22415 -4.25099 0.64121 1.55288 1.98223 2.44083 3.26460 3.33152 3.41571 3.67227 3.89517 4.32730 4.48116 4.69154 4.77225 4.82800 4.93785 5.11924 5.12755 5.21800 5.25249 5.36153 5.44184 5.51737 5.52076 5.55015 5.70703 5.71474 5.81297 5.88882 5.98432 6.03932 6.08989 6.35135 6.47968 6.77991 7.03652 7.12793 7.34454 8.08120 8.44515 8.70872 8.82531 9.36885 10.89440 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.026787 B = 0.003735 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.033752 B = 7494.015769 C = 8314.508479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.049 4.049 4 C -0.204 4.204 5 S 0.201 5.799 6 C -0.248 4.248 7 C 0.573 3.427 8 O -0.546 6.546 9 N -0.699 5.699 10 C 0.221 3.779 11 C -0.545 4.545 12 H 0.080 0.920 13 C 0.079 3.921 14 N -0.891 5.891 15 Si 0.877 3.123 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.260 1.260 19 C -0.060 4.060 20 C -0.115 4.115 21 C -0.062 4.062 22 C -0.147 4.147 23 H 0.054 0.946 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.394 0.606 31 H 0.029 0.971 32 H 0.024 0.976 33 H 0.268 0.732 34 H 0.149 0.851 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.159 -0.353 -15.182 24.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.088 4.088 4 C -0.323 4.323 5 S 0.471 5.529 6 C -0.369 4.369 7 C 0.358 3.642 8 O -0.427 6.427 9 N -0.347 5.347 10 C 0.099 3.901 11 C -0.583 4.583 12 H 0.098 0.902 13 C -0.125 4.125 14 N -0.528 5.528 15 Si 0.703 3.297 16 H -0.198 1.198 17 H -0.208 1.208 18 H -0.184 1.184 19 C -0.093 4.093 20 C -0.128 4.128 21 C -0.102 4.102 22 C -0.205 4.205 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.228 0.772 31 H 0.046 0.954 32 H 0.042 0.958 33 H 0.078 0.922 34 H 0.167 0.833 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.626 -0.350 -13.890 23.237 hybrid contribution 0.906 0.031 -1.451 1.711 sum -17.719 -0.320 -15.341 23.440 Atomic orbital electron populations 1.21778 0.95447 1.01856 1.01867 1.21560 0.95741 0.95768 1.02825 1.20212 0.87397 0.97898 1.03308 1.23983 1.00785 1.10015 0.97534 1.83123 0.94301 1.68164 1.07294 1.24786 0.97354 1.16825 0.97912 1.17048 0.86318 0.77700 0.83134 1.90774 1.41817 1.51817 1.58298 1.46116 1.11467 1.72101 1.04972 1.19563 0.78654 0.97078 0.94821 1.21070 0.95461 1.53558 0.88218 0.90197 1.24784 0.99209 0.93786 0.94743 1.69883 1.28609 1.49269 1.05046 0.86819 0.83434 0.79102 0.80372 1.19778 1.20830 1.18450 1.20551 0.95383 0.98122 0.95272 1.18581 0.92408 1.05834 0.95988 1.20226 1.00542 0.97678 0.91733 1.21753 1.01879 0.96116 1.00704 0.92682 0.92528 0.92603 0.91562 0.91585 0.90771 0.89903 0.77207 0.95357 0.95807 0.92215 0.83314 0.90997 0.91083 0.92658 0.92397 0.92531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.91 37.16 0.37 -0.59 16 2 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 3 C -0.05 -0.41 5.04 -27.88 -0.14 -0.55 16 4 C -0.20 -2.29 5.53 -35.86 -0.20 -2.49 16 5 S 0.20 2.64 22.10 -107.50 -2.38 0.27 16 6 C -0.25 -4.11 6.45 -36.79 -0.24 -4.35 16 7 C 0.57 11.96 7.78 -12.89 -0.10 11.86 16 8 O -0.55 -13.11 16.84 5.19 0.09 -13.02 16 9 N -0.70 -15.13 5.54 -62.83 -0.35 -15.48 16 10 C 0.22 5.57 4.50 -5.19 -0.02 5.54 16 11 C -0.55 -15.16 9.83 -34.44 -0.34 -15.50 16 12 H 0.08 2.31 7.84 -52.49 -0.41 1.90 16 13 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 14 N -0.89 -26.53 13.96 55.43 0.77 -25.75 16 15 Si 0.88 21.54 27.47 -169.99 -4.67 16.87 16 16 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 19 C -0.06 -0.88 9.78 -40.43 -0.40 -1.28 16 20 C -0.12 -1.36 5.04 -106.45 -0.54 -1.89 16 21 C -0.06 -0.56 5.54 -27.88 -0.15 -0.71 16 22 C -0.15 -1.19 9.83 37.16 0.37 -0.83 16 23 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 24 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.07 0.52 7.74 -51.93 -0.40 0.12 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.08 0.61 6.39 -51.93 -0.33 0.28 16 30 H 0.39 7.70 7.43 -40.82 -0.30 7.40 16 31 H 0.03 0.75 7.20 -51.92 -0.37 0.37 16 32 H 0.02 0.62 7.57 -51.93 -0.39 0.23 16 33 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.15 2.13 8.06 -52.49 -0.42 1.71 16 35 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 36 H 0.07 0.55 7.06 -51.93 -0.37 0.19 16 37 H 0.05 0.44 7.24 -51.93 -0.38 0.06 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.37 8.14 -51.92 -0.42 -0.05 16 LS Contribution 337.22 15.07 5.08 5.08 Total: -1.00 -31.67 337.22 -9.03 -40.69 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -5.93 Total: 1.08 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -1.65 Total: -9.73 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: 0.43 Total: -41.23 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: 0.09 Total: -13.02 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Atomic # 16 Polarization: 2.64 SS G_CDS: -2.38 Total: 0.27 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.67 -9.03 -40.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343895991.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.654 kcal (2) G-P(sol) polarization free energy of solvation -31.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds