Wall clock time and date at job start Tue Mar 31 2020 05:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46976 * 2 1 4 4 C 1.50696 * 109.47089 * 180.02562 * 3 2 1 5 5 S 1.70624 * 124.52474 * 270.02453 * 4 3 2 6 6 C 1.75828 * 91.56226 * 179.97438 * 5 4 3 7 7 C 1.46586 * 125.45530 * 179.97438 * 6 5 4 8 8 O 1.21703 * 120.00024 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99782 * 0.02562 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72446 * 9 7 6 11 11 C 1.50703 * 109.47138 * 180.28062 * 10 9 7 12 12 H 1.08001 * 120.00037 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99824 * 180.02562 * 11 10 9 14 14 N 1.31522 * 119.99572 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 120.00297 * 359.97438 * 13 11 10 16 16 H 1.48498 * 109.47136 * 89.99858 * 15 13 11 17 17 H 1.48503 * 109.47098 * 209.99924 * 15 13 11 18 18 H 1.48504 * 109.46915 * 329.99778 * 15 13 11 19 19 C 1.36643 * 109.08762 * 0.24358 * 6 5 4 20 20 C 1.33815 * 124.52172 * 90.00297 * 4 3 2 21 21 C 1.50697 * 122.45246 * 359.97438 * 20 4 3 22 22 C 1.53001 * 109.47012 * 84.99512 * 21 20 4 23 23 H 1.08990 * 109.47349 * 59.99873 * 1 2 3 24 24 H 1.09007 * 109.46752 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47039 * 299.99569 * 1 2 3 26 26 H 1.09003 * 109.47039 * 240.00431 * 2 1 3 27 27 H 1.08998 * 109.47532 * 119.99904 * 2 1 3 28 28 H 1.09003 * 109.46885 * 60.00337 * 3 2 1 29 29 H 1.08998 * 109.46911 * 300.00284 * 3 2 1 30 30 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 31 31 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 32 32 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 33 33 H 0.97001 * 119.99511 * 179.97438 * 14 13 11 34 34 H 1.07995 * 123.35716 * 179.75353 * 19 6 5 35 35 H 1.08995 * 109.47437 * 205.00216 * 21 20 4 36 36 H 1.09005 * 109.46636 * 324.99895 * 21 20 4 37 37 H 1.08995 * 109.47594 * 300.00608 * 22 21 20 38 38 H 1.09000 * 109.46683 * 60.00804 * 22 21 20 39 39 H 1.09008 * 109.46912 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5469 1.4426 -0.0006 5 16 4.5145 1.4418 1.4047 6 6 5.9894 1.4416 0.4474 7 6 7.3527 1.4415 0.9860 8 8 8.3059 1.4418 0.2294 9 7 7.5505 1.4410 2.3192 10 6 8.9130 1.4348 2.8575 11 6 8.8582 1.4286 4.3635 12 1 7.9038 1.4297 4.8691 13 6 10.0263 1.4227 5.0959 14 7 9.9784 1.4178 6.4102 15 14 11.6770 1.4216 4.2214 16 1 12.1182 2.8213 3.9950 17 1 12.6802 0.7156 5.0585 18 1 11.5449 0.7268 2.9156 19 6 5.6612 1.4476 -0.8790 20 6 4.3048 1.4428 -1.1035 21 6 3.7148 1.4425 -2.4901 22 6 3.3988 2.8794 -2.9102 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6766 1.9564 -0.8900 30 1 6.7908 1.4404 2.9223 31 1 9.4372 0.5447 2.5094 32 1 9.4424 2.3246 2.5169 33 1 10.8003 1.4132 6.9254 34 1 6.3942 1.4526 -1.6721 35 1 4.4296 1.0085 -3.1891 36 1 2.7981 0.8527 -2.4948 37 1 2.6839 3.3135 -2.2112 38 1 4.3154 3.4692 -2.9056 39 1 2.9715 2.8791 -3.9131 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343895991.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:03 Heat of formation + Delta-G solvation = -58.236298 kcal Electronic energy + Delta-G solvation = -19129.154619 eV Core-core repulsion = 16161.307781 eV Total energy + Delta-G solvation = -2967.846838 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.82032 -39.67606 -36.29846 -35.77889 -34.49366 -33.57742 -31.17666 -30.09819 -27.65357 -25.05368 -24.89690 -23.26298 -22.31549 -21.62776 -19.92870 -19.28101 -18.42226 -17.59614 -16.81685 -16.40808 -16.32784 -15.79757 -15.46953 -15.05072 -14.81884 -14.76559 -14.48871 -14.28623 -14.20767 -13.81429 -13.47191 -13.11292 -12.86675 -12.77218 -12.70382 -12.39877 -12.37338 -12.02181 -11.95798 -11.80230 -11.72597 -11.70629 -11.37091 -11.17961 -10.95302 -10.16771 -9.63517 -9.36079 -8.43000 -6.51185 -0.51607 0.44974 0.92435 1.31156 1.33388 1.33689 1.46509 2.14231 2.24894 2.28845 2.91949 3.67881 3.80186 4.05408 4.07553 4.17009 4.26497 4.37795 4.55634 4.61646 4.66124 4.73363 4.75501 4.84914 4.94426 4.96500 4.99639 5.01940 5.14272 5.19010 5.24398 5.29293 5.33328 5.37414 5.45770 5.49315 5.57131 6.02462 6.46465 6.64582 7.05467 7.20413 8.71704 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.026787 B = 0.003735 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.033752 B = 7494.015769 C = 8314.508479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C -0.050 4.050 4 C -0.179 4.179 5 S 0.214 5.786 6 C -0.297 4.297 7 C 0.575 3.425 8 O -0.586 6.586 9 N -0.702 5.702 10 C 0.232 3.768 11 C -0.552 4.552 12 H 0.058 0.942 13 C 0.029 3.971 14 N -0.928 5.928 15 Si 0.938 3.062 16 H -0.263 1.263 17 H -0.270 1.270 18 H -0.261 1.261 19 C -0.046 4.046 20 C -0.124 4.124 21 C -0.060 4.060 22 C -0.145 4.145 23 H 0.065 0.935 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.067 0.933 27 H 0.055 0.945 28 H 0.083 0.917 29 H 0.103 0.897 30 H 0.403 0.597 31 H 0.018 0.982 32 H 0.017 0.983 33 H 0.274 0.726 34 H 0.145 0.855 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.059 0.941 38 H 0.043 0.957 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.126 -0.293 -16.922 27.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.089 4.089 4 C -0.299 4.299 5 S 0.484 5.516 6 C -0.416 4.416 7 C 0.363 3.637 8 O -0.470 6.470 9 N -0.350 5.350 10 C 0.109 3.891 11 C -0.589 4.589 12 H 0.076 0.924 13 C -0.171 4.171 14 N -0.566 5.566 15 Si 0.761 3.239 16 H -0.188 1.188 17 H -0.195 1.195 18 H -0.185 1.185 19 C -0.081 4.081 20 C -0.136 4.136 21 C -0.099 4.099 22 C -0.203 4.203 23 H 0.084 0.916 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.102 0.898 29 H 0.121 0.879 30 H 0.238 0.762 31 H 0.036 0.964 32 H 0.035 0.965 33 H 0.083 0.917 34 H 0.163 0.837 35 H 0.093 0.907 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.062 0.938 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -20.626 -0.287 -15.620 25.875 hybrid contribution 1.334 0.005 -0.932 1.627 sum -19.293 -0.282 -16.552 25.421 Atomic orbital electron populations 1.21756 0.94064 1.02318 1.02542 1.21547 0.96902 0.94899 1.02407 1.20406 0.84897 0.98839 1.04788 1.24460 1.02246 1.06836 0.96325 1.83057 0.92806 1.67924 1.07773 1.24354 0.96424 1.21594 0.99275 1.17529 0.87855 0.76085 0.82226 1.90729 1.43738 1.53594 1.58916 1.45954 1.10400 1.72865 1.05818 1.19198 0.80567 0.96132 0.93187 1.21232 0.94829 1.53331 0.89540 0.92383 1.25590 1.02865 0.93320 0.95374 1.69979 1.29964 1.50242 1.06446 0.85847 0.79201 0.79604 0.79212 1.18797 1.19487 1.18487 1.20772 0.96828 0.96087 0.94375 1.18791 0.91130 1.05895 0.97818 1.20311 1.01244 0.98664 0.89716 1.21749 1.01425 0.95154 1.01963 0.91579 0.92243 0.92382 0.91469 0.92646 0.89834 0.87874 0.76176 0.96442 0.96536 0.91678 0.83720 0.90682 0.89167 0.92243 0.93812 0.90634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.91 71.98 0.71 -0.68 16 2 C -0.12 -1.49 5.92 30.60 0.18 -1.31 16 3 C -0.05 -0.68 5.04 29.85 0.15 -0.52 16 4 C -0.18 -3.61 5.53 24.68 0.14 -3.47 16 5 S 0.21 5.44 22.10 -56.49 -1.25 4.19 16 6 C -0.30 -9.89 6.45 24.08 0.16 -9.73 16 7 C 0.58 24.65 7.78 86.42 0.67 25.33 16 8 O -0.59 -28.98 16.84 -4.36 -0.07 -29.05 16 9 N -0.70 -31.27 5.54 -470.89 -2.61 -33.88 16 10 C 0.23 11.99 4.50 85.63 0.38 12.37 16 11 C -0.55 -31.41 9.83 25.60 0.25 -31.16 16 12 H 0.06 3.47 7.84 -2.91 -0.02 3.45 16 13 C 0.03 1.68 5.47 84.65 0.46 2.15 16 14 N -0.93 -55.91 13.96 21.45 0.30 -55.61 16 15 Si 0.94 44.62 27.47 68.60 1.88 46.51 16 16 H -0.26 -12.08 7.11 99.48 0.71 -11.37 16 17 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 18 H -0.26 -12.34 6.54 99.48 0.65 -11.69 16 19 C -0.05 -1.32 9.78 21.72 0.21 -1.11 16 20 C -0.12 -2.68 5.04 -21.05 -0.11 -2.79 16 21 C -0.06 -0.89 5.54 29.85 0.17 -0.73 16 22 C -0.15 -1.92 9.83 71.98 0.71 -1.21 16 23 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 24 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 25 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.07 0.84 7.74 -2.39 -0.02 0.83 16 27 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.08 1.03 8.14 -2.39 -0.02 1.02 16 29 H 0.10 1.06 6.39 -2.39 -0.02 1.05 16 30 H 0.40 16.25 7.43 -92.71 -0.69 15.56 16 31 H 0.02 0.94 7.20 -2.38 -0.02 0.93 16 32 H 0.02 0.88 7.57 -2.39 -0.02 0.86 16 33 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 34 H 0.15 4.16 8.06 -2.91 -0.02 4.14 16 35 H 0.07 1.10 8.10 -2.39 -0.02 1.08 16 36 H 0.09 1.03 7.06 -2.38 -0.02 1.01 16 37 H 0.06 0.73 7.24 -2.39 -0.02 0.72 16 38 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 Total: -1.00 -69.05 337.22 2.64 -66.41 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 0.30 Total: 14.30 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: 4.09 Total: -12.87 kcal Atomic # 7 Polarization: -87.18 SS G_CDS: -2.31 Total: -89.49 kcal Atomic # 8 Polarization: -28.98 SS G_CDS: -0.07 Total: -29.05 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 1.88 Total: 46.51 kcal Atomic # 16 Polarization: 5.44 SS G_CDS: -1.25 Total: 4.19 kcal Total: -69.05 2.64 -66.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343895991.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.172 kcal (2) G-P(sol) polarization free energy of solvation -69.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds