Wall clock time and date at job start Tue Mar 31 2020 05:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47341 * 2 1 4 4 C 1.53000 * 109.47110 * 239.99255 * 2 1 3 5 5 C 1.50703 * 109.46702 * 60.00528 * 4 2 1 6 6 H 1.07994 * 119.99976 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99649 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00139 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99771 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47274 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47083 * 120.00376 * 9 7 5 12 12 H 1.48508 * 109.47126 * 240.00416 * 9 7 5 13 13 C 1.53005 * 109.47078 * 119.99698 * 2 1 3 14 14 N 1.46508 * 109.46985 * 300.00097 * 13 2 1 15 15 C 1.34774 * 119.99630 * 179.97438 * 14 13 2 16 16 O 1.21283 * 120.00315 * 0.02562 * 15 14 13 17 17 C 1.50704 * 119.99429 * 179.97438 * 15 14 13 18 18 C 1.50703 * 109.46698 * 180.02562 * 17 15 14 19 19 C 1.38425 * 122.53762 * 90.00158 * 18 17 15 20 20 C 1.33390 * 114.92123 * 179.97438 * 19 18 17 21 21 S 1.75891 * 109.59251 * 0.02562 * 20 19 18 22 22 C 1.33383 * 122.54063 * 269.97431 * 18 17 15 23 23 H 1.09005 * 109.46966 * 300.00519 * 1 2 3 24 24 H 1.08997 * 109.46961 * 59.99857 * 1 2 3 25 25 H 1.08993 * 109.47513 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47051 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.46942 * 299.99511 * 3 2 1 28 28 H 1.08995 * 109.47421 * 59.99977 * 3 2 1 29 29 H 1.08999 * 109.47151 * 180.02562 * 4 2 1 30 30 H 1.08993 * 109.47059 * 300.00433 * 4 2 1 31 31 H 0.97000 * 119.99996 * 179.97438 * 8 7 5 32 32 H 1.08999 * 109.47326 * 179.97438 * 13 2 1 33 33 H 1.08998 * 109.46785 * 59.99275 * 13 2 1 34 34 H 0.97000 * 120.00041 * 359.97438 * 14 13 2 35 35 H 1.08999 * 109.47203 * 60.00330 * 17 15 14 36 36 H 1.09003 * 109.47454 * 299.99901 * 17 15 14 37 37 H 1.07997 * 122.54292 * 359.71157 * 19 18 17 38 38 H 1.08003 * 125.20243 * 179.97438 * 20 19 18 39 39 H 1.08000 * 125.20529 * 0.06732 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 1.5377 -0.0110 -2.4797 6 1 0.9166 0.8669 -2.3806 7 6 1.8712 -0.4819 -3.7319 8 7 2.6273 -1.5512 -3.8524 9 14 1.2481 0.3982 -5.2571 10 1 0.4217 1.5640 -4.8531 11 1 2.4028 0.8656 -6.0654 12 1 0.4237 -0.5357 -6.0655 13 6 2.0400 -0.7212 1.2493 14 7 1.5516 -0.0305 2.4455 15 6 1.8768 -0.4912 3.6696 16 8 2.5741 -1.4773 3.7809 17 6 1.3749 0.2197 4.9000 18 6 1.8771 -0.4908 6.1305 19 6 3.0783 -0.1684 6.7382 20 6 3.3743 -0.8933 7.8181 21 16 2.0908 -2.0584 8.1163 22 6 1.1976 -1.4775 6.7168 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 3.1301 1.4424 0.0005 27 1 1.6768 1.9563 -0.8900 28 1 1.6768 1.9564 0.8899 29 1 3.1300 -0.7218 -1.2489 30 1 1.6766 -1.7490 -1.2490 31 1 2.8616 -1.8827 -4.7334 32 1 3.1300 -0.7216 1.2491 33 1 1.6766 -1.7488 1.2494 34 1 0.9943 0.7584 2.3564 35 1 0.2849 0.2204 4.8999 36 1 1.7390 1.2471 4.9000 37 1 3.7287 0.6082 6.3638 38 1 4.2661 -0.7824 8.4171 39 1 0.2452 -1.8619 6.3827 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345914189.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:30 Heat of formation + Delta-G solvation = -25.309997 kcal Electronic energy + Delta-G solvation = -19367.737126 eV Core-core repulsion = 16401.318080 eV Total energy + Delta-G solvation = -2966.419046 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.85170 -38.05641 -36.87081 -33.58042 -32.16621 -31.22450 -28.39964 -27.07230 -26.52717 -25.92639 -23.50958 -22.64542 -20.34616 -18.94579 -18.31029 -17.66157 -16.78378 -16.34884 -15.78759 -15.22722 -14.85666 -14.48361 -13.83372 -13.79878 -13.18588 -13.07718 -12.97256 -12.81330 -12.61027 -12.28625 -12.20138 -12.07297 -11.72102 -11.15237 -11.03479 -10.91130 -10.84740 -10.65817 -10.41524 -10.25233 -9.89071 -9.78523 -9.19422 -8.93827 -8.87700 -8.70659 -8.47303 -8.37303 -6.01054 -4.02410 0.91319 1.56145 1.86741 2.54179 2.84482 3.29182 3.37314 3.39438 3.59696 4.44254 4.66475 4.79143 5.04970 5.12020 5.25919 5.34532 5.35853 5.50241 5.53396 5.62028 5.73919 5.90457 6.15658 6.21378 6.24888 6.29338 6.34426 6.38536 6.56722 6.61625 6.76674 7.05229 7.06184 7.11932 7.63284 7.75314 7.76587 7.97840 8.39045 8.46870 9.02744 9.60872 11.10454 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.049637 B = 0.002813 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.958772 B = 9951.706138 C =10078.398082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.073 4.073 3 C -0.127 4.127 4 C 0.035 3.965 5 C -0.511 4.511 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.129 3.871 14 N -0.723 5.723 15 C 0.507 3.493 16 O -0.537 6.537 17 C -0.084 4.084 18 C -0.081 4.081 19 C -0.119 4.119 20 C -0.214 4.214 21 S 0.088 5.912 22 C -0.198 4.198 23 H 0.029 0.971 24 H 0.067 0.933 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.067 0.933 28 H 0.029 0.971 29 H 0.018 0.982 30 H 0.018 0.982 31 H 0.259 0.741 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.398 0.602 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.139 0.861 38 H 0.163 0.837 39 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.344 4.902 21.745 22.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.002 4.002 5 C -0.549 4.549 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.006 3.994 14 N -0.375 5.375 15 C 0.292 3.708 16 O -0.413 6.413 17 C -0.127 4.127 18 C -0.093 4.093 19 C -0.150 4.150 20 C -0.349 4.349 21 S 0.351 5.649 22 C -0.334 4.334 23 H 0.048 0.952 24 H 0.086 0.914 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.086 0.914 28 H 0.048 0.952 29 H 0.036 0.964 30 H 0.036 0.964 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.233 0.767 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.156 0.844 38 H 0.180 0.820 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -2.995 2.931 22.797 23.179 hybrid contribution -0.237 1.783 -2.138 2.794 sum -3.231 4.714 20.659 21.435 Atomic orbital electron populations 1.21758 0.95288 1.01131 1.00224 1.20904 0.95458 0.95853 0.95084 1.21758 1.00524 0.95894 1.00226 1.19094 0.96354 0.95225 0.89524 1.21220 1.31087 1.12068 0.90508 0.92196 1.25021 0.95323 0.95086 0.99113 1.69976 1.37006 1.23050 1.23345 0.86594 0.78611 0.79673 0.83453 1.19798 1.21127 1.21133 1.21610 0.98864 0.95984 0.82965 1.46214 1.53440 1.32025 1.05847 1.20467 0.80902 0.84966 0.84486 1.90720 1.37623 1.26215 1.86781 1.20398 1.02406 0.99905 0.89956 1.18348 0.95365 0.98345 0.97281 1.20031 0.97034 1.02022 0.95888 1.25504 1.03875 1.01830 1.03718 1.84161 1.14260 1.38044 1.28445 1.25391 1.05127 1.02104 1.00778 0.95231 0.91442 0.93404 0.93396 0.91443 0.95225 0.96365 0.96373 0.93084 0.91914 0.91931 0.76705 0.88114 0.88004 0.84361 0.81966 0.82030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.17 8.05 37.16 0.30 -1.87 16 2 C -0.07 -1.35 0.54 -154.50 -0.08 -1.44 16 3 C -0.13 -2.17 8.05 37.16 0.30 -1.87 16 4 C 0.04 0.87 4.04 -27.88 -0.11 0.75 16 5 C -0.51 -13.46 7.65 -34.44 -0.26 -13.73 16 6 H 0.06 1.52 5.68 -52.49 -0.30 1.22 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 9 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 10 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 13 C 0.13 2.25 4.56 -4.03 -0.02 2.23 16 14 N -0.72 -10.03 4.96 -60.29 -0.30 -10.33 16 15 C 0.51 7.25 7.82 -10.98 -0.09 7.16 16 16 O -0.54 -10.12 16.03 5.56 0.09 -10.03 16 17 C -0.08 -0.84 5.96 -29.03 -0.17 -1.01 16 18 C -0.08 -0.92 4.29 -106.25 -0.46 -1.37 16 19 C -0.12 -1.30 9.98 -41.21 -0.41 -1.71 16 20 C -0.21 -2.13 11.23 29.04 0.33 -1.80 16 21 S 0.09 0.87 23.34 -107.50 -2.51 -1.64 16 22 C -0.20 -2.17 10.98 29.04 0.32 -1.85 16 23 H 0.03 0.40 6.86 -51.93 -0.36 0.05 16 24 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 28 H 0.03 0.40 6.86 -51.93 -0.36 0.05 16 29 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.40 4.50 6.16 -40.82 -0.25 4.25 16 35 H 0.10 0.77 8.12 -51.93 -0.42 0.35 16 36 H 0.10 0.78 8.13 -51.93 -0.42 0.36 16 37 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 38 H 0.16 1.22 8.06 -52.48 -0.42 0.80 16 39 H 0.16 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 333.47 15.07 5.03 5.03 Total: -1.00 -31.81 333.47 -8.17 -39.98 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -5.73 Total: 1.62 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: -0.46 Total: -15.05 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: 0.44 Total: -35.98 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.09 Total: -10.03 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 0.87 SS G_CDS: -2.51 Total: -1.64 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.81 -8.17 -39.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345914189.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.669 kcal (2) G-P(sol) polarization free energy of solvation -31.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds