Wall clock time and date at job start Tue Mar 31 2020 05:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47341 * 2 1 4 4 C 1.53000 * 109.47110 * 239.99255 * 2 1 3 5 5 C 1.50703 * 109.46702 * 60.00528 * 4 2 1 6 6 H 1.07994 * 119.99976 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99649 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00139 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99771 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47274 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47083 * 120.00376 * 9 7 5 12 12 H 1.48508 * 109.47126 * 240.00416 * 9 7 5 13 13 C 1.53005 * 109.47078 * 119.99698 * 2 1 3 14 14 N 1.46508 * 109.46985 * 300.00097 * 13 2 1 15 15 C 1.34774 * 119.99630 * 179.97438 * 14 13 2 16 16 O 1.21283 * 120.00315 * 0.02562 * 15 14 13 17 17 C 1.50704 * 119.99429 * 179.97438 * 15 14 13 18 18 C 1.50703 * 109.46698 * 180.02562 * 17 15 14 19 19 C 1.38425 * 122.53762 * 90.00158 * 18 17 15 20 20 C 1.33390 * 114.92123 * 179.97438 * 19 18 17 21 21 S 1.75891 * 109.59251 * 0.02562 * 20 19 18 22 22 C 1.33383 * 122.54063 * 269.97431 * 18 17 15 23 23 H 1.09005 * 109.46966 * 300.00519 * 1 2 3 24 24 H 1.08997 * 109.46961 * 59.99857 * 1 2 3 25 25 H 1.08993 * 109.47513 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47051 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.46942 * 299.99511 * 3 2 1 28 28 H 1.08995 * 109.47421 * 59.99977 * 3 2 1 29 29 H 1.08999 * 109.47151 * 180.02562 * 4 2 1 30 30 H 1.08993 * 109.47059 * 300.00433 * 4 2 1 31 31 H 0.97000 * 119.99996 * 179.97438 * 8 7 5 32 32 H 1.08999 * 109.47326 * 179.97438 * 13 2 1 33 33 H 1.08998 * 109.46785 * 59.99275 * 13 2 1 34 34 H 0.97000 * 120.00041 * 359.97438 * 14 13 2 35 35 H 1.08999 * 109.47203 * 60.00330 * 17 15 14 36 36 H 1.09003 * 109.47454 * 299.99901 * 17 15 14 37 37 H 1.07997 * 122.54292 * 359.71157 * 19 18 17 38 38 H 1.08003 * 125.20243 * 179.97438 * 20 19 18 39 39 H 1.08000 * 125.20529 * 0.06732 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 1.5377 -0.0110 -2.4797 6 1 0.9166 0.8669 -2.3806 7 6 1.8712 -0.4819 -3.7319 8 7 2.6273 -1.5512 -3.8524 9 14 1.2481 0.3982 -5.2571 10 1 0.4217 1.5640 -4.8531 11 1 2.4028 0.8656 -6.0654 12 1 0.4237 -0.5357 -6.0655 13 6 2.0400 -0.7212 1.2493 14 7 1.5516 -0.0305 2.4455 15 6 1.8768 -0.4912 3.6696 16 8 2.5741 -1.4773 3.7809 17 6 1.3749 0.2197 4.9000 18 6 1.8771 -0.4908 6.1305 19 6 3.0783 -0.1684 6.7382 20 6 3.3743 -0.8933 7.8181 21 16 2.0908 -2.0584 8.1163 22 6 1.1976 -1.4775 6.7168 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 3.1301 1.4424 0.0005 27 1 1.6768 1.9563 -0.8900 28 1 1.6768 1.9564 0.8899 29 1 3.1300 -0.7218 -1.2489 30 1 1.6766 -1.7490 -1.2490 31 1 2.8616 -1.8827 -4.7334 32 1 3.1300 -0.7216 1.2491 33 1 1.6766 -1.7488 1.2494 34 1 0.9943 0.7584 2.3564 35 1 0.2849 0.2204 4.8999 36 1 1.7390 1.2471 4.9000 37 1 3.7287 0.6082 6.3638 38 1 4.2661 -0.7824 8.4171 39 1 0.2452 -1.8619 6.3827 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345914189.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:30 Heat of formation + Delta-G solvation = -44.782326 kcal Electronic energy + Delta-G solvation = -19368.581509 eV Core-core repulsion = 16401.318080 eV Total energy + Delta-G solvation = -2967.263430 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.99648 -39.12980 -38.18562 -35.19798 -33.93769 -32.10881 -29.44889 -28.85815 -27.93444 -27.26844 -24.97943 -23.91586 -21.53049 -20.03766 -19.49234 -18.51100 -18.35392 -17.93882 -16.88365 -16.52379 -16.37626 -15.82913 -15.19192 -15.12377 -14.61607 -14.32547 -14.03166 -13.92809 -13.89478 -13.59040 -13.50138 -13.05501 -12.89135 -12.68824 -12.62393 -12.46772 -12.32373 -12.21690 -11.93850 -11.67171 -11.51873 -11.14755 -10.88103 -10.75301 -10.52211 -10.00572 -9.66731 -9.26189 -8.13959 -6.21843 0.13500 0.81026 1.10473 1.41976 1.43032 1.54763 1.70764 1.74065 2.41671 2.51411 3.20695 3.85112 3.98584 4.06316 4.10936 4.19919 4.25346 4.41883 4.55613 4.66636 4.71843 4.74841 4.79087 4.84054 4.99451 5.13584 5.14785 5.15054 5.43312 5.49493 5.51275 5.51932 5.56133 5.57067 5.60175 5.82043 5.90814 6.30799 6.67903 6.94130 7.37051 7.46213 8.98883 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.049637 B = 0.002813 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.958772 B = 9951.706138 C =10078.398082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.064 4.064 3 C -0.121 4.121 4 C 0.039 3.961 5 C -0.511 4.511 6 H 0.074 0.926 7 C -0.007 4.007 8 N -0.940 5.940 9 Si 0.959 3.041 10 H -0.255 1.255 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.143 3.857 14 N -0.710 5.710 15 C 0.506 3.494 16 O -0.588 6.588 17 C -0.073 4.073 18 C -0.097 4.097 19 C -0.138 4.138 20 C -0.218 4.218 21 S 0.089 5.911 22 C -0.214 4.214 23 H 0.074 0.926 24 H 0.055 0.945 25 H 0.034 0.966 26 H 0.035 0.965 27 H 0.055 0.945 28 H 0.074 0.926 29 H -0.016 1.016 30 H -0.016 1.016 31 H 0.259 0.741 32 H 0.041 0.959 33 H 0.041 0.959 34 H 0.415 0.585 35 H 0.131 0.869 36 H 0.133 0.867 37 H 0.150 0.850 38 H 0.183 0.817 39 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.949 7.414 22.980 24.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.065 4.065 3 C -0.179 4.179 4 C 0.001 3.999 5 C -0.549 4.549 6 H 0.092 0.908 7 C -0.204 4.204 8 N -0.581 5.581 9 Si 0.784 3.216 10 H -0.179 1.179 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.018 3.982 14 N -0.363 5.363 15 C 0.294 3.706 16 O -0.468 6.468 17 C -0.115 4.115 18 C -0.110 4.110 19 C -0.168 4.168 20 C -0.353 4.353 21 S 0.353 5.647 22 C -0.350 4.350 23 H 0.093 0.907 24 H 0.074 0.926 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.093 0.907 29 H 0.002 0.998 30 H 0.002 0.998 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.254 0.746 35 H 0.149 0.851 36 H 0.151 0.849 37 H 0.167 0.833 38 H 0.200 0.800 39 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -4.634 5.491 24.052 25.102 hybrid contribution 0.305 0.939 -2.450 2.642 sum -4.329 6.430 21.602 22.950 Atomic orbital electron populations 1.21695 0.93460 1.00894 1.01819 1.20705 0.96789 0.96343 0.92656 1.21694 0.99819 0.94530 1.01821 1.18986 0.94173 0.94156 0.92587 1.21635 1.30236 1.12050 0.91015 0.90774 1.25970 0.95701 0.95881 1.02809 1.70135 1.38922 1.25067 1.24018 0.85484 0.78044 0.78845 0.79199 1.17871 1.21101 1.21130 1.21147 0.97530 0.95250 0.84264 1.45978 1.53422 1.32222 1.04664 1.21287 0.79659 0.84254 0.85407 1.90708 1.39940 1.28668 1.87457 1.20444 1.04109 1.00407 0.86542 1.18618 0.95704 0.98788 0.97901 1.20294 0.97372 1.02791 0.96345 1.25851 1.04432 1.01289 1.03770 1.84131 1.14325 1.38078 1.28204 1.25680 1.05859 1.02225 1.01187 0.90743 0.92631 0.94634 0.94607 0.92634 0.90732 0.99787 0.99811 0.93209 0.94030 0.94072 0.74647 0.85081 0.84933 0.83275 0.79971 0.80988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.92 8.05 71.98 0.58 -3.34 16 2 C -0.06 -2.38 0.54 -52.18 -0.03 -2.40 16 3 C -0.12 -3.91 8.05 71.98 0.58 -3.33 16 4 C 0.04 1.96 4.04 29.85 0.12 2.08 16 5 C -0.51 -27.23 7.65 25.60 0.20 -27.03 16 6 H 0.07 3.67 5.68 -2.91 -0.02 3.66 16 7 C -0.01 -0.39 5.46 84.65 0.46 0.07 16 8 N -0.94 -57.35 13.29 21.45 0.28 -57.07 16 9 Si 0.96 43.40 29.54 68.60 2.03 45.43 16 10 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 12 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 13 C 0.14 5.01 4.56 86.38 0.39 5.40 16 14 N -0.71 -17.98 4.96 -463.03 -2.30 -20.27 16 15 C 0.51 13.48 7.82 87.66 0.69 14.16 16 16 O -0.59 -22.04 16.03 -3.04 -0.05 -22.09 16 17 C -0.07 -1.20 5.96 29.10 0.17 -1.03 16 18 C -0.10 -2.00 4.29 -20.92 -0.09 -2.09 16 19 C -0.14 -2.75 9.98 21.22 0.21 -2.54 16 20 C -0.22 -4.01 11.23 66.72 0.75 -3.26 16 21 S 0.09 1.67 23.34 -56.49 -1.32 0.36 16 22 C -0.21 -4.34 10.98 66.72 0.73 -3.61 16 23 H 0.07 1.73 6.86 -2.38 -0.02 1.71 16 24 H 0.05 1.93 6.62 -2.39 -0.02 1.92 16 25 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.05 1.93 6.62 -2.39 -0.02 1.92 16 28 H 0.07 1.73 6.86 -2.39 -0.02 1.71 16 29 H -0.02 -0.93 8.14 -2.39 -0.02 -0.94 16 30 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 31 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 32 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.42 7.53 6.16 -92.71 -0.57 6.96 16 35 H 0.13 1.39 8.12 -2.39 -0.02 1.37 16 36 H 0.13 1.40 8.13 -2.39 -0.02 1.38 16 37 H 0.15 2.52 8.06 -2.91 -0.02 2.49 16 38 H 0.18 2.41 8.06 -2.91 -0.02 2.39 16 39 H 0.17 2.94 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -72.34 333.47 3.89 -68.45 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: 0.47 Total: 12.11 kcal Atomic # 6 Polarization: -31.69 SS G_CDS: 4.77 Total: -26.92 kcal Atomic # 7 Polarization: -75.33 SS G_CDS: -2.01 Total: -77.34 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: -0.05 Total: -22.09 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 16 Polarization: 1.67 SS G_CDS: -1.32 Total: 0.36 kcal Total: -72.34 3.89 -68.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345914189.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.670 kcal (2) G-P(sol) polarization free energy of solvation -72.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds