Wall clock time and date at job start Tue Mar 31 2020 05:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.47351 * 2 1 4 4 C 1.52997 * 109.46943 * 240.00342 * 2 1 3 5 5 C 1.50697 * 109.47466 * 59.99989 * 4 2 1 6 6 H 1.08006 * 119.99920 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00428 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99563 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00432 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46756 * 59.99920 * 9 7 5 11 11 H 1.48490 * 109.47381 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.47116 * 300.00521 * 9 7 5 13 13 C 1.52997 * 109.46974 * 120.00408 * 2 1 3 14 14 N 1.46496 * 109.47194 * 299.99572 * 13 2 1 15 15 C 1.34777 * 120.00271 * 179.97438 * 14 13 2 16 16 O 1.21278 * 119.99854 * 0.02562 * 15 14 13 17 17 C 1.50703 * 120.00161 * 180.02562 * 15 14 13 18 18 C 1.50701 * 109.47064 * 180.02562 * 17 15 14 19 19 C 1.33393 * 125.20065 * 89.99813 * 18 17 15 20 20 C 1.38425 * 114.92007 * 179.97438 * 19 18 17 21 21 C 1.33389 * 114.92135 * 0.02562 * 20 19 18 22 22 S 1.75882 * 125.20483 * 269.69667 * 18 17 15 23 23 H 1.09000 * 109.46866 * 299.99817 * 1 2 3 24 24 H 1.09001 * 109.46611 * 59.99700 * 1 2 3 25 25 H 1.08988 * 109.47066 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47063 * 180.02562 * 3 2 1 27 27 H 1.08996 * 109.47407 * 300.00485 * 3 2 1 28 28 H 1.09004 * 109.46733 * 59.99802 * 3 2 1 29 29 H 1.09002 * 109.47153 * 180.02562 * 4 2 1 30 30 H 1.09001 * 109.47289 * 300.00299 * 4 2 1 31 31 H 0.97002 * 119.99731 * 180.02562 * 8 7 5 32 32 H 1.09002 * 109.47045 * 179.97438 * 13 2 1 33 33 H 1.09001 * 109.47375 * 59.99624 * 13 2 1 34 34 H 0.97005 * 120.00266 * 0.02562 * 14 13 2 35 35 H 1.09002 * 109.47152 * 60.00245 * 17 15 14 36 36 H 1.09001 * 109.46980 * 300.00345 * 17 15 14 37 37 H 1.08005 * 122.54147 * 359.96383 * 19 18 17 38 38 H 1.07995 * 122.53675 * 180.02562 * 20 19 18 39 39 H 1.07999 * 125.20519 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5377 -0.0108 -2.4797 6 1 0.9171 0.8676 -2.3806 7 6 1.8712 -0.4814 -3.7320 8 7 2.6273 -1.5507 -3.8527 9 14 1.2479 0.3988 -5.2572 10 1 1.7419 1.7992 -5.2570 11 1 1.7440 -0.3004 -6.4697 12 1 -0.2371 0.3978 -5.2573 13 6 2.0400 -0.7213 1.2492 14 7 1.5518 -0.0308 2.4454 15 6 1.8769 -0.4916 3.6695 16 8 2.5741 -1.4777 3.7807 17 6 1.3741 0.2185 4.9000 18 6 1.8765 -0.4920 6.1304 19 6 3.0227 -0.2249 6.7584 20 6 3.2748 -1.0093 7.8707 21 6 2.3337 -1.9137 8.1457 22 16 1.0379 -1.7950 6.9624 23 1 -0.3633 0.5138 0.8900 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1300 1.4424 -0.0005 27 1 1.6768 1.9564 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 3.1300 -0.7216 -1.2491 30 1 1.6766 -1.7488 -1.2494 31 1 2.8622 -1.8817 -4.7337 32 1 3.1300 -0.7217 1.2490 33 1 1.6766 -1.7490 1.2492 34 1 0.9938 0.7578 2.3565 35 1 0.2841 0.2185 4.8996 36 1 1.7375 1.2462 4.9004 37 1 3.7025 0.5450 6.4243 38 1 4.1660 -0.8974 8.4705 39 1 2.3608 -2.6090 8.9717 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346020297.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:27 Heat of formation + Delta-G solvation = -25.409511 kcal Electronic energy + Delta-G solvation = -19320.729338 eV Core-core repulsion = 16354.305977 eV Total energy + Delta-G solvation = -2966.423361 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.72625 -37.88400 -36.99122 -33.60999 -32.43410 -31.89064 -27.77872 -27.01663 -26.53398 -25.79332 -23.53604 -22.65207 -20.35915 -19.37279 -18.40717 -17.22890 -16.83395 -16.32444 -15.75876 -15.27793 -15.09171 -14.51359 -13.92506 -13.81989 -13.16753 -13.06232 -12.92594 -12.78405 -12.63844 -12.45350 -12.14691 -12.06443 -11.65482 -11.15899 -11.01653 -10.88417 -10.85243 -10.64601 -10.41981 -10.28291 -9.89184 -9.84412 -9.20816 -8.95892 -8.74115 -8.73184 -8.53109 -8.36717 -6.00819 -4.02391 0.88117 1.53801 1.90334 2.63303 2.79197 3.31094 3.36736 3.37441 3.50086 4.44205 4.48001 4.91972 4.95140 5.01308 5.22251 5.34508 5.44978 5.46480 5.52206 5.61059 5.73038 5.99205 6.14756 6.16417 6.20543 6.27635 6.36911 6.37684 6.54816 6.60910 6.74672 7.04346 7.05702 7.11051 7.62547 7.72114 7.74998 7.97668 8.38153 8.42404 9.02233 9.60753 11.10619 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.047673 B = 0.002900 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.194477 B = 9653.651679 C = 9728.422835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.073 4.073 3 C -0.127 4.127 4 C 0.036 3.964 5 C -0.512 4.512 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.129 3.871 14 N -0.722 5.722 15 C 0.506 3.494 16 O -0.533 6.533 17 C -0.073 4.073 18 C -0.152 4.152 19 C -0.132 4.132 20 C -0.132 4.132 21 C -0.218 4.218 22 S 0.106 5.894 23 H 0.029 0.971 24 H 0.067 0.933 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.067 0.933 28 H 0.029 0.971 29 H 0.018 0.982 30 H 0.018 0.982 31 H 0.261 0.739 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.398 0.602 35 H 0.102 0.898 36 H 0.111 0.889 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.462 4.791 21.618 22.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.001 4.001 5 C -0.551 4.551 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.006 3.994 14 N -0.374 5.374 15 C 0.290 3.710 16 O -0.410 6.410 17 C -0.115 4.115 18 C -0.270 4.270 19 C -0.162 4.162 20 C -0.163 4.163 21 C -0.354 4.354 22 S 0.369 5.631 23 H 0.048 0.952 24 H 0.086 0.914 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.086 0.914 28 H 0.048 0.952 29 H 0.036 0.964 30 H 0.036 0.964 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.233 0.767 35 H 0.121 0.879 36 H 0.129 0.871 37 H 0.155 0.845 38 H 0.156 0.844 39 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -4.235 3.173 21.340 21.986 hybrid contribution 0.863 1.436 -0.782 1.849 sum -3.371 4.610 20.558 21.336 Atomic orbital electron populations 1.21761 0.95267 1.01170 1.00222 1.20908 0.95474 0.95860 0.95070 1.21759 1.00542 0.95880 1.00223 1.19082 0.96341 0.95219 0.89466 1.21144 1.31292 1.12093 0.90534 0.92311 1.25016 0.95301 0.95075 0.99086 1.69957 1.36854 1.23002 1.23574 0.86707 0.79145 0.79759 0.82666 1.20328 1.21386 1.20318 1.21624 0.98910 0.96015 0.82865 1.46192 1.53358 1.32052 1.05779 1.20392 0.81062 0.85043 0.84456 1.90730 1.37485 1.26046 1.86705 1.20194 1.02434 0.99877 0.89016 1.23801 1.00076 1.01968 1.01109 1.20063 0.96884 1.02589 0.96650 1.20113 1.00530 0.96937 0.98696 1.25572 0.99241 1.05732 1.04806 1.84208 1.23017 1.34065 1.21770 0.95241 0.91427 0.93371 0.93378 0.91435 0.95236 0.96370 0.96367 0.92960 0.91840 0.91849 0.76664 0.87947 0.87114 0.84472 0.84420 0.82058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.17 8.05 37.16 0.30 -1.88 16 2 C -0.07 -1.35 0.54 -154.51 -0.08 -1.44 16 3 C -0.13 -2.17 8.05 37.16 0.30 -1.87 16 4 C 0.04 0.89 4.04 -27.89 -0.11 0.78 16 5 C -0.51 -13.51 7.65 -34.44 -0.26 -13.77 16 6 H 0.06 1.48 5.68 -52.48 -0.30 1.18 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 8 N -0.89 -26.39 13.29 55.43 0.74 -25.66 16 9 Si 0.89 21.10 29.54 -169.99 -5.02 16.07 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 13 C 0.13 2.25 4.56 -4.05 -0.02 2.23 16 14 N -0.72 -10.02 4.96 -60.30 -0.30 -10.32 16 15 C 0.51 7.28 7.82 -10.98 -0.09 7.19 16 16 O -0.53 -10.04 16.03 5.56 0.09 -9.95 16 17 C -0.07 -0.74 6.19 -29.03 -0.18 -0.92 16 18 C -0.15 -1.76 5.00 -36.00 -0.18 -1.94 16 19 C -0.13 -1.46 10.05 -41.21 -0.41 -1.88 16 20 C -0.13 -1.34 10.18 -41.21 -0.42 -1.75 16 21 C -0.22 -2.16 11.23 29.04 0.33 -1.83 16 22 S 0.11 1.17 23.33 -107.50 -2.51 -1.34 16 23 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 24 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 25 H 0.05 0.85 8.14 -51.94 -0.42 0.43 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.07 1.25 6.62 -51.93 -0.34 0.90 16 28 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 29 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.40 4.49 6.16 -40.82 -0.25 4.24 16 35 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.14 1.33 8.06 -52.48 -0.42 0.90 16 38 H 0.14 1.08 8.06 -52.49 -0.42 0.65 16 39 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 333.71 15.07 5.03 5.03 Total: -1.00 -31.77 333.71 -8.64 -40.40 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -5.74 Total: 1.38 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: -0.93 Total: -15.62 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: 0.44 Total: -35.97 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.09 Total: -9.95 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 1.17 SS G_CDS: -2.51 Total: -1.34 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.77 -8.64 -40.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346020297.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.994 kcal (2) G-P(sol) polarization free energy of solvation -31.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds