Wall clock time and date at job start Tue Mar 31 2020 05:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.47351 * 2 1 4 4 C 1.52997 * 109.46943 * 240.00342 * 2 1 3 5 5 C 1.50697 * 109.47466 * 59.99989 * 4 2 1 6 6 H 1.08006 * 119.99920 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00428 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99563 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00432 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46756 * 59.99920 * 9 7 5 11 11 H 1.48490 * 109.47381 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.47116 * 300.00521 * 9 7 5 13 13 C 1.52997 * 109.46974 * 120.00408 * 2 1 3 14 14 N 1.46496 * 109.47194 * 299.99572 * 13 2 1 15 15 C 1.34777 * 120.00271 * 179.97438 * 14 13 2 16 16 O 1.21278 * 119.99854 * 0.02562 * 15 14 13 17 17 C 1.50703 * 120.00161 * 180.02562 * 15 14 13 18 18 C 1.50701 * 109.47064 * 180.02562 * 17 15 14 19 19 C 1.33393 * 125.20065 * 89.99813 * 18 17 15 20 20 C 1.38425 * 114.92007 * 179.97438 * 19 18 17 21 21 C 1.33389 * 114.92135 * 0.02562 * 20 19 18 22 22 S 1.75882 * 125.20483 * 269.69667 * 18 17 15 23 23 H 1.09000 * 109.46866 * 299.99817 * 1 2 3 24 24 H 1.09001 * 109.46611 * 59.99700 * 1 2 3 25 25 H 1.08988 * 109.47066 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47063 * 180.02562 * 3 2 1 27 27 H 1.08996 * 109.47407 * 300.00485 * 3 2 1 28 28 H 1.09004 * 109.46733 * 59.99802 * 3 2 1 29 29 H 1.09002 * 109.47153 * 180.02562 * 4 2 1 30 30 H 1.09001 * 109.47289 * 300.00299 * 4 2 1 31 31 H 0.97002 * 119.99731 * 180.02562 * 8 7 5 32 32 H 1.09002 * 109.47045 * 179.97438 * 13 2 1 33 33 H 1.09001 * 109.47375 * 59.99624 * 13 2 1 34 34 H 0.97005 * 120.00266 * 0.02562 * 14 13 2 35 35 H 1.09002 * 109.47152 * 60.00245 * 17 15 14 36 36 H 1.09001 * 109.46980 * 300.00345 * 17 15 14 37 37 H 1.08005 * 122.54147 * 359.96383 * 19 18 17 38 38 H 1.07995 * 122.53675 * 180.02562 * 20 19 18 39 39 H 1.07999 * 125.20519 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5377 -0.0108 -2.4797 6 1 0.9171 0.8676 -2.3806 7 6 1.8712 -0.4814 -3.7320 8 7 2.6273 -1.5507 -3.8527 9 14 1.2479 0.3988 -5.2572 10 1 1.7419 1.7992 -5.2570 11 1 1.7440 -0.3004 -6.4697 12 1 -0.2371 0.3978 -5.2573 13 6 2.0400 -0.7213 1.2492 14 7 1.5518 -0.0308 2.4454 15 6 1.8769 -0.4916 3.6695 16 8 2.5741 -1.4777 3.7807 17 6 1.3741 0.2185 4.9000 18 6 1.8765 -0.4920 6.1304 19 6 3.0227 -0.2249 6.7584 20 6 3.2748 -1.0093 7.8707 21 6 2.3337 -1.9137 8.1457 22 16 1.0379 -1.7950 6.9624 23 1 -0.3633 0.5138 0.8900 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1300 1.4424 -0.0005 27 1 1.6768 1.9564 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 3.1300 -0.7216 -1.2491 30 1 1.6766 -1.7488 -1.2494 31 1 2.8622 -1.8817 -4.7337 32 1 3.1300 -0.7217 1.2490 33 1 1.6766 -1.7490 1.2492 34 1 0.9938 0.7578 2.3565 35 1 0.2841 0.2185 4.8996 36 1 1.7375 1.2462 4.9004 37 1 3.7025 0.5450 6.4243 38 1 4.1660 -0.8974 8.4705 39 1 2.3608 -2.6090 8.9717 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346020297.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:27 Heat of formation + Delta-G solvation = -44.701852 kcal Electronic energy + Delta-G solvation = -19321.565917 eV Core-core repulsion = 16354.305977 eV Total energy + Delta-G solvation = -2967.259940 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.92887 -38.93040 -38.26842 -35.22119 -33.99557 -33.01503 -29.23630 -28.50083 -27.94262 -27.05912 -24.96484 -23.96229 -21.54955 -20.20408 -19.84753 -18.38512 -18.11759 -17.97556 -16.76550 -16.56258 -16.39221 -16.09058 -15.27453 -15.14723 -14.65351 -14.33130 -14.13195 -13.92604 -13.76346 -13.58059 -13.48457 -13.24076 -12.83207 -12.74885 -12.58364 -12.40396 -12.31315 -12.21554 -11.99825 -11.64423 -11.52155 -11.18276 -10.90122 -10.79942 -10.50574 -10.03948 -9.55715 -9.34461 -8.13776 -6.21898 0.08309 0.76216 1.12393 1.42796 1.44907 1.52154 1.67709 1.83022 2.35657 2.46719 3.20614 3.65290 3.94631 4.08614 4.09698 4.23929 4.24482 4.29326 4.54350 4.70660 4.72255 4.73633 4.76729 4.83007 4.98426 5.12506 5.14215 5.22760 5.39782 5.42085 5.48213 5.51513 5.55382 5.58530 5.61673 5.81451 5.90353 6.30437 6.62593 6.93558 7.31273 7.46077 8.98671 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.047673 B = 0.002900 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.194477 B = 9653.651679 C = 9728.422835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.065 4.065 3 C -0.121 4.121 4 C 0.040 3.960 5 C -0.514 4.514 6 H 0.074 0.926 7 C -0.006 4.006 8 N -0.940 5.940 9 Si 0.959 3.041 10 H -0.266 1.266 11 H -0.292 1.292 12 H -0.266 1.266 13 C 0.143 3.857 14 N -0.708 5.708 15 C 0.505 3.495 16 O -0.583 6.583 17 C -0.064 4.064 18 C -0.172 4.172 19 C -0.141 4.141 20 C -0.144 4.144 21 C -0.217 4.217 22 S 0.080 5.920 23 H 0.073 0.927 24 H 0.055 0.945 25 H 0.034 0.966 26 H 0.035 0.965 27 H 0.055 0.945 28 H 0.074 0.926 29 H -0.016 1.016 30 H -0.017 1.017 31 H 0.259 0.741 32 H 0.043 0.957 33 H 0.041 0.959 34 H 0.416 0.584 35 H 0.129 0.871 36 H 0.145 0.855 37 H 0.149 0.851 38 H 0.159 0.841 39 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.814 7.279 23.027 24.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.065 4.065 3 C -0.179 4.179 4 C 0.002 3.998 5 C -0.552 4.552 6 H 0.092 0.908 7 C -0.203 4.203 8 N -0.581 5.581 9 Si 0.784 3.216 10 H -0.191 1.191 11 H -0.218 1.218 12 H -0.191 1.191 13 C 0.018 3.982 14 N -0.361 5.361 15 C 0.292 3.708 16 O -0.463 6.463 17 C -0.105 4.105 18 C -0.289 4.289 19 C -0.171 4.171 20 C -0.174 4.174 21 C -0.353 4.353 22 S 0.343 5.657 23 H 0.092 0.908 24 H 0.074 0.926 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.093 0.907 29 H 0.002 0.998 30 H 0.002 0.998 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.254 0.746 35 H 0.147 0.853 36 H 0.163 0.837 37 H 0.167 0.833 38 H 0.177 0.823 39 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -5.622 5.710 22.768 24.137 hybrid contribution 1.338 0.607 -1.142 1.861 sum -4.284 6.317 21.625 22.933 Atomic orbital electron populations 1.21699 0.93486 1.00898 1.01819 1.20707 0.96770 0.96376 0.92649 1.21695 0.99843 0.94493 1.01831 1.18971 0.94174 0.94136 0.92522 1.21577 1.30466 1.12121 0.91050 0.90801 1.25969 0.95661 0.95860 1.02792 1.70124 1.38800 1.25036 1.24153 0.85590 0.78982 0.78770 0.78253 1.19056 1.21789 1.19085 1.21162 0.97626 0.95258 0.84129 1.45950 1.53338 1.32254 1.04605 1.21183 0.79863 0.84354 0.85379 1.90716 1.39762 1.28422 1.87386 1.20256 1.03936 1.00548 0.85740 1.24054 1.00602 1.02364 1.01902 1.20391 0.96891 1.02942 0.96888 1.20433 1.01380 0.96775 0.98823 1.25909 0.98488 1.05953 1.04920 1.84251 1.24080 1.34656 1.22705 0.90777 0.92588 0.94653 0.94572 0.92619 0.90729 0.99765 0.99826 0.93187 0.93864 0.94013 0.74600 0.85293 0.83746 0.83325 0.82303 0.79862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.95 8.05 71.98 0.58 -3.37 16 2 C -0.06 -2.38 0.54 -52.18 -0.03 -2.41 16 3 C -0.12 -3.91 8.05 71.98 0.58 -3.33 16 4 C 0.04 2.01 4.04 29.85 0.12 2.13 16 5 C -0.51 -27.41 7.65 25.60 0.20 -27.21 16 6 H 0.07 3.65 5.68 -2.91 -0.02 3.63 16 7 C -0.01 -0.34 5.46 84.65 0.46 0.12 16 8 N -0.94 -57.40 13.29 21.45 0.28 -57.11 16 9 Si 0.96 43.38 29.54 68.60 2.03 45.40 16 10 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 11 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 12 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 13 C 0.14 5.01 4.56 86.38 0.39 5.41 16 14 N -0.71 -18.08 4.96 -463.07 -2.30 -20.38 16 15 C 0.51 13.64 7.82 87.66 0.69 14.32 16 16 O -0.58 -21.93 16.03 -3.02 -0.05 -21.98 16 17 C -0.06 -1.09 6.19 29.10 0.18 -0.91 16 18 C -0.17 -3.65 5.00 24.59 0.12 -3.52 16 19 C -0.14 -2.86 10.05 21.22 0.21 -2.64 16 20 C -0.14 -2.65 10.18 21.22 0.22 -2.43 16 21 C -0.22 -3.96 11.23 66.72 0.75 -3.21 16 22 S 0.08 1.67 23.33 -56.49 -1.32 0.35 16 23 H 0.07 1.73 6.86 -2.39 -0.02 1.72 16 24 H 0.06 1.95 6.62 -2.39 -0.02 1.94 16 25 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.05 1.94 6.62 -2.39 -0.02 1.92 16 28 H 0.07 1.72 6.86 -2.39 -0.02 1.71 16 29 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 30 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 31 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 32 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.42 7.60 6.16 -92.70 -0.57 7.03 16 35 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.14 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 38 H 0.16 2.12 8.06 -2.91 -0.02 2.10 16 39 H 0.18 2.34 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -72.40 333.71 3.59 -68.81 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 0.47 Total: 11.97 kcal Atomic # 6 Polarization: -31.53 SS G_CDS: 4.47 Total: -27.06 kcal Atomic # 7 Polarization: -75.48 SS G_CDS: -2.01 Total: -77.49 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -0.05 Total: -21.98 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 16 Polarization: 1.67 SS G_CDS: -1.32 Total: 0.35 kcal Total: -72.40 3.59 -68.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346020297.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.109 kcal (2) G-P(sol) polarization free energy of solvation -72.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds