Wall clock time and date at job start Tue Mar 31 2020 05:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47393 * 2 1 4 4 C 1.50702 * 109.47077 * 120.00189 * 2 1 3 5 5 C 1.37482 * 123.34945 * 294.67090 * 4 2 1 6 6 C 1.33813 * 115.10165 * 179.97438 * 5 4 2 7 7 S 1.70616 * 110.95434 * 0.02562 * 6 5 4 8 8 C 1.36646 * 123.35481 * 114.64513 * 4 2 1 9 9 C 1.46579 * 125.45586 * 0.06080 * 8 4 2 10 10 O 1.21696 * 120.00453 * 5.63581 * 9 8 4 11 11 N 1.34777 * 119.99608 * 185.64013 * 9 8 4 12 12 C 1.46509 * 119.99951 * 179.97438 * 11 9 8 13 13 C 1.52995 * 109.46996 * 179.97438 * 12 11 9 14 14 C 1.53004 * 109.46818 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.47023 * 180.02562 * 14 13 12 16 16 H 1.08003 * 120.00351 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00042 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00181 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00101 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47126 * 60.00019 * 19 17 15 21 21 H 1.48500 * 109.46918 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47166 * 299.99828 * 19 17 15 23 23 H 1.09001 * 109.47448 * 59.99986 * 1 2 3 24 24 H 1.09003 * 109.47442 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47019 * 300.00319 * 1 2 3 26 26 H 1.09000 * 109.47019 * 239.99681 * 2 1 3 27 27 H 1.09003 * 109.46877 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.46545 * 299.99956 * 3 2 1 29 29 H 1.09000 * 109.47298 * 59.99852 * 3 2 1 30 30 H 1.07998 * 122.44551 * 359.95360 * 5 4 2 31 31 H 1.07998 * 124.52062 * 179.97438 * 6 5 4 32 32 H 0.97003 * 120.00204 * 359.97438 * 11 9 8 33 33 H 1.09000 * 109.46924 * 300.00298 * 12 11 9 34 34 H 1.08997 * 109.46664 * 60.00292 * 12 11 9 35 35 H 1.09000 * 109.47610 * 299.99979 * 13 12 11 36 36 H 1.09002 * 109.47290 * 60.00226 * 13 12 11 37 37 H 1.08999 * 109.47553 * 300.00116 * 14 13 12 38 38 H 1.08997 * 109.46664 * 60.00502 * 14 13 12 39 39 H 0.96991 * 120.00387 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 1.8323 -0.2429 2.5078 6 6 2.3488 -1.0052 3.4787 7 16 3.1290 -2.3760 2.8283 8 6 2.7315 -1.8837 1.1878 9 6 3.0933 -2.6141 -0.0305 10 8 2.8577 -2.1309 -1.1223 11 7 3.6867 -3.8209 0.0585 12 6 4.0479 -4.5512 -1.1592 13 6 4.7023 -5.8814 -0.7809 14 6 5.0789 -6.6443 -2.0525 15 6 5.7229 -7.9548 -1.6800 16 1 5.8505 -8.2175 -0.6402 17 6 6.1493 -8.8185 -2.6665 18 7 5.9935 -8.4989 -3.9327 19 14 6.9470 -10.4433 -2.2047 20 1 5.9928 -11.2538 -1.4061 21 1 7.3137 -11.1831 -3.4389 22 1 8.1692 -10.1842 -1.4019 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 3.1301 1.4424 -0.0005 28 1 1.6767 1.9562 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.2977 0.6729 2.7125 31 1 2.2815 -0.7820 4.5332 32 1 3.8748 -4.2059 0.9287 33 1 3.1507 -4.7417 -1.7481 34 1 4.7479 -3.9561 -1.7455 35 1 5.5995 -5.6905 -0.1921 36 1 4.0026 -6.4767 -0.1942 37 1 4.1814 -6.8353 -2.6410 38 1 5.7784 -6.0492 -2.6395 39 1 6.2938 -9.1063 -4.6267 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349300679.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:18 Heat of formation + Delta-G solvation = -34.255960 kcal Electronic energy + Delta-G solvation = -19056.650650 eV Core-core repulsion = 16089.843678 eV Total energy + Delta-G solvation = -2966.806972 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.98576 -38.31520 -35.42352 -34.20555 -33.33138 -31.41753 -29.78786 -27.22428 -26.85459 -24.84761 -23.10825 -21.87530 -21.08677 -20.59614 -18.71672 -17.74570 -16.50391 -16.17823 -15.64854 -15.40360 -14.89811 -14.44887 -14.28852 -14.20144 -13.70077 -13.49172 -13.44296 -12.75706 -12.64362 -12.28985 -12.22876 -11.85305 -11.73542 -11.63221 -11.23422 -11.08693 -10.89099 -10.82464 -10.73399 -10.61479 -9.88164 -9.71230 -9.36056 -9.13919 -9.08938 -8.75306 -8.63768 -8.37356 -6.02099 -4.05359 0.37665 1.31460 1.70684 2.23219 3.23699 3.31575 3.31973 3.36810 3.39218 4.44012 4.60316 4.76525 4.85797 4.98576 5.13255 5.20428 5.33591 5.46961 5.51378 5.53477 5.68880 5.71798 5.75269 5.82174 5.94538 6.00110 6.13569 6.16053 6.17420 6.34693 6.57503 6.61490 6.80082 6.98154 7.60889 7.62546 7.75087 7.96335 8.28147 8.37778 9.01011 9.58817 11.09180 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.029833 B = 0.003060 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.319406 B = 9147.310839 C = 9879.763439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.070 4.070 3 C -0.138 4.138 4 C -0.014 4.014 5 C -0.143 4.143 6 C -0.232 4.232 7 S 0.194 5.806 8 C -0.266 4.266 9 C 0.586 3.414 10 O -0.528 6.528 11 N -0.721 5.721 12 C 0.117 3.883 13 C -0.122 4.122 14 C 0.025 3.975 15 C -0.524 4.524 16 H 0.055 0.945 17 C 0.057 3.943 18 N -0.894 5.894 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 H 0.059 0.941 24 H 0.054 0.946 25 H 0.050 0.950 26 H 0.123 0.877 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.142 0.858 31 H 0.167 0.833 32 H 0.395 0.605 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.173 17.998 14.907 25.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.090 4.090 3 C -0.195 4.195 4 C -0.029 4.029 5 C -0.175 4.175 6 C -0.370 4.370 7 S 0.462 5.538 8 C -0.386 4.386 9 C 0.372 3.628 10 O -0.407 6.407 11 N -0.371 5.371 12 C -0.005 4.005 13 C -0.160 4.160 14 C -0.013 4.013 15 C -0.562 4.562 16 H 0.073 0.927 17 C -0.144 4.144 18 N -0.533 5.533 19 Si 0.721 3.279 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 H 0.078 0.922 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.141 0.859 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.160 0.840 31 H 0.185 0.815 32 H 0.229 0.771 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.498 16.988 14.597 23.955 hybrid contribution -0.231 0.140 0.304 0.407 sum -8.729 17.128 14.900 24.322 Atomic orbital electron populations 1.21761 0.94321 1.01880 1.01486 1.20431 0.95758 0.95945 0.96834 1.21780 1.01212 0.95040 1.01504 1.19486 0.94960 0.92532 0.95915 1.19863 1.04178 1.02341 0.91083 1.25223 1.06228 1.01073 1.04478 1.83077 1.51958 1.22394 0.96346 1.24537 1.13527 1.03322 0.97195 1.16955 0.77736 0.80947 0.87175 1.90689 1.54880 1.67493 1.27661 1.46136 1.61057 1.18918 1.10944 1.21711 1.00124 0.93370 0.85302 1.21910 0.99064 0.93081 1.01950 1.19021 0.96892 0.94350 0.91035 1.21166 1.39441 1.02856 0.92729 0.92680 1.25026 0.96010 0.98391 0.94991 1.69950 1.47149 1.36987 0.99195 0.86640 0.79820 0.83685 0.77739 1.20231 1.21263 1.20237 0.92169 0.92683 0.93064 0.85898 0.92661 0.92202 0.93035 0.84016 0.81529 0.77081 0.91404 0.91415 0.92651 0.92653 0.96220 0.96219 0.92848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.09 37.16 0.34 -1.01 16 2 C -0.07 -0.81 3.07 -91.77 -0.28 -1.09 16 3 C -0.14 -1.32 8.99 37.16 0.33 -0.98 16 4 C -0.01 -0.16 4.72 -105.47 -0.50 -0.66 16 5 C -0.14 -1.34 9.18 -41.41 -0.38 -1.72 16 6 C -0.23 -1.96 10.92 29.18 0.32 -1.64 16 7 S 0.19 1.87 22.17 -107.50 -2.38 -0.51 16 8 C -0.27 -3.44 6.45 -36.80 -0.24 -3.68 16 9 C 0.59 9.25 7.77 -12.90 -0.10 9.15 16 10 O -0.53 -9.79 14.00 5.19 0.07 -9.71 16 11 N -0.72 -10.92 5.55 -61.65 -0.34 -11.26 16 12 C 0.12 2.08 5.67 -4.04 -0.02 2.05 16 13 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 14 C 0.02 0.62 4.97 -27.88 -0.14 0.49 16 15 C -0.52 -14.60 9.11 -34.44 -0.31 -14.92 16 16 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 18 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 19 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 23 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.43 8.00 -51.93 -0.42 0.01 16 26 H 0.12 1.80 4.95 -51.93 -0.26 1.54 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.41 7.50 -51.93 -0.39 0.02 16 30 H 0.14 1.05 7.67 -52.49 -0.40 0.65 16 31 H 0.17 0.95 8.06 -52.49 -0.42 0.53 16 32 H 0.40 5.08 7.61 -40.82 -0.31 4.77 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 35 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 337.79 15.07 5.09 5.09 Total: -1.00 -31.36 337.79 -9.03 -40.40 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -5.97 Total: 0.63 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: -1.22 Total: -15.01 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: 0.39 Total: -37.32 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.07 Total: -9.71 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: 1.87 SS G_CDS: -2.38 Total: -0.51 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.36 -9.03 -40.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349300679.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.143 kcal (2) G-P(sol) polarization free energy of solvation -31.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds