Wall clock time and date at job start Tue Mar 31 2020 05:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47393 * 2 1 4 4 C 1.50702 * 109.47077 * 120.00189 * 2 1 3 5 5 C 1.37482 * 123.34945 * 294.67090 * 4 2 1 6 6 C 1.33813 * 115.10165 * 179.97438 * 5 4 2 7 7 S 1.70616 * 110.95434 * 0.02562 * 6 5 4 8 8 C 1.36646 * 123.35481 * 114.64513 * 4 2 1 9 9 C 1.46579 * 125.45586 * 0.06080 * 8 4 2 10 10 O 1.21696 * 120.00453 * 5.63581 * 9 8 4 11 11 N 1.34777 * 119.99608 * 185.64013 * 9 8 4 12 12 C 1.46509 * 119.99951 * 179.97438 * 11 9 8 13 13 C 1.52995 * 109.46996 * 179.97438 * 12 11 9 14 14 C 1.53004 * 109.46818 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.47023 * 180.02562 * 14 13 12 16 16 H 1.08003 * 120.00351 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00042 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00181 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00101 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47126 * 60.00019 * 19 17 15 21 21 H 1.48500 * 109.46918 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47166 * 299.99828 * 19 17 15 23 23 H 1.09001 * 109.47448 * 59.99986 * 1 2 3 24 24 H 1.09003 * 109.47442 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47019 * 300.00319 * 1 2 3 26 26 H 1.09000 * 109.47019 * 239.99681 * 2 1 3 27 27 H 1.09003 * 109.46877 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.46545 * 299.99956 * 3 2 1 29 29 H 1.09000 * 109.47298 * 59.99852 * 3 2 1 30 30 H 1.07998 * 122.44551 * 359.95360 * 5 4 2 31 31 H 1.07998 * 124.52062 * 179.97438 * 6 5 4 32 32 H 0.97003 * 120.00204 * 359.97438 * 11 9 8 33 33 H 1.09000 * 109.46924 * 300.00298 * 12 11 9 34 34 H 1.08997 * 109.46664 * 60.00292 * 12 11 9 35 35 H 1.09000 * 109.47610 * 299.99979 * 13 12 11 36 36 H 1.09002 * 109.47290 * 60.00226 * 13 12 11 37 37 H 1.08999 * 109.47553 * 300.00116 * 14 13 12 38 38 H 1.08997 * 109.46664 * 60.00502 * 14 13 12 39 39 H 0.96991 * 120.00387 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 1.8323 -0.2429 2.5078 6 6 2.3488 -1.0052 3.4787 7 16 3.1290 -2.3760 2.8283 8 6 2.7315 -1.8837 1.1878 9 6 3.0933 -2.6141 -0.0305 10 8 2.8577 -2.1309 -1.1223 11 7 3.6867 -3.8209 0.0585 12 6 4.0479 -4.5512 -1.1592 13 6 4.7023 -5.8814 -0.7809 14 6 5.0789 -6.6443 -2.0525 15 6 5.7229 -7.9548 -1.6800 16 1 5.8505 -8.2175 -0.6402 17 6 6.1493 -8.8185 -2.6665 18 7 5.9935 -8.4989 -3.9327 19 14 6.9470 -10.4433 -2.2047 20 1 5.9928 -11.2538 -1.4061 21 1 7.3137 -11.1831 -3.4389 22 1 8.1692 -10.1842 -1.4019 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 3.1301 1.4424 -0.0005 28 1 1.6767 1.9562 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.2977 0.6729 2.7125 31 1 2.2815 -0.7820 4.5332 32 1 3.8748 -4.2059 0.9287 33 1 3.1507 -4.7417 -1.7481 34 1 4.7479 -3.9561 -1.7455 35 1 5.5995 -5.6905 -0.1921 36 1 4.0026 -6.4767 -0.1942 37 1 4.1814 -6.8353 -2.6410 38 1 5.7784 -6.0492 -2.6395 39 1 6.2938 -9.1063 -4.6267 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349300679.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:18 Heat of formation + Delta-G solvation = -52.952137 kcal Electronic energy + Delta-G solvation = -19057.461377 eV Core-core repulsion = 16089.843678 eV Total energy + Delta-G solvation = -2967.617699 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.09325 -39.29554 -36.96719 -35.28994 -34.93282 -33.17451 -30.84241 -28.56325 -27.98835 -26.00775 -24.67817 -22.71869 -22.40184 -22.14517 -19.84900 -18.67175 -18.46462 -17.17661 -16.86872 -16.78041 -16.45015 -15.95366 -15.56253 -15.15174 -14.66938 -14.48491 -14.40706 -14.24808 -13.81041 -13.58256 -13.45754 -13.35212 -12.94035 -12.72271 -12.59026 -12.43621 -12.36905 -12.04826 -12.03869 -11.70485 -11.61930 -11.50772 -11.23723 -10.65798 -10.55176 -10.29288 -9.74534 -9.38836 -8.19692 -6.31462 -0.47527 0.51247 0.95495 1.40621 1.41605 1.44782 1.52626 2.07743 2.13631 2.42474 3.13951 3.75272 3.87514 3.99788 4.14788 4.17080 4.28927 4.31825 4.44518 4.51131 4.70098 4.78368 4.80594 4.90458 4.92470 4.97152 5.05025 5.12557 5.16981 5.22301 5.34816 5.38415 5.39916 5.50291 5.68677 5.70033 5.82971 6.21290 6.41656 6.85496 7.09201 7.38118 8.92297 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.029833 B = 0.003060 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.319406 B = 9147.310839 C = 9879.763439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.076 4.076 3 C -0.132 4.132 4 C -0.011 4.011 5 C -0.155 4.155 6 C -0.210 4.210 7 S 0.221 5.779 8 C -0.312 4.312 9 C 0.582 3.418 10 O -0.567 6.567 11 N -0.714 5.714 12 C 0.131 3.869 13 C -0.103 4.103 14 C 0.025 3.975 15 C -0.543 4.543 16 H 0.067 0.933 17 C -0.003 4.003 18 N -0.935 5.935 19 Si 0.968 3.032 20 H -0.265 1.265 21 H -0.286 1.286 22 H -0.265 1.265 23 H 0.066 0.934 24 H 0.038 0.962 25 H 0.073 0.927 26 H 0.086 0.914 27 H 0.042 0.958 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.168 0.832 31 H 0.203 0.797 32 H 0.408 0.592 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.068 0.932 37 H -0.007 1.007 38 H -0.007 1.007 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.455 18.528 18.341 27.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.097 4.097 3 C -0.190 4.190 4 C -0.027 4.027 5 C -0.186 4.186 6 C -0.348 4.348 7 S 0.490 5.510 8 C -0.432 4.432 9 C 0.371 3.629 10 O -0.449 6.449 11 N -0.365 5.365 12 C 0.008 3.992 13 C -0.141 4.141 14 C -0.013 4.013 15 C -0.581 4.581 16 H 0.085 0.915 17 C -0.201 4.201 18 N -0.575 5.575 19 Si 0.792 3.208 20 H -0.190 1.190 21 H -0.211 1.211 22 H -0.190 1.190 23 H 0.085 0.915 24 H 0.057 0.943 25 H 0.092 0.908 26 H 0.104 0.896 27 H 0.061 0.939 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.185 0.815 31 H 0.220 0.780 32 H 0.244 0.756 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.011 0.989 38 H 0.012 0.988 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.778 17.516 18.075 26.657 hybrid contribution -0.177 0.047 -0.726 0.749 sum -8.956 17.564 17.348 26.261 Atomic orbital electron populations 1.21723 0.93023 1.01263 1.02911 1.20399 0.96878 0.96792 0.95604 1.21742 1.00382 0.93892 1.02958 1.19754 0.93906 0.91949 0.97072 1.20026 1.05070 1.03606 0.89862 1.25711 1.03590 0.99436 1.06040 1.82948 1.51570 1.22779 0.93695 1.24334 1.16499 1.04524 0.97815 1.17411 0.76840 0.80707 0.87951 1.90678 1.56330 1.68336 1.29536 1.45911 1.61192 1.18894 1.10520 1.21302 0.99037 0.92666 0.86232 1.21620 0.99997 0.93245 0.99233 1.18926 0.94969 0.94339 0.93036 1.21650 1.39328 1.03732 0.93387 0.91524 1.26027 0.96620 1.02580 0.94824 1.70102 1.48382 1.38574 1.00462 0.85465 0.79132 0.78655 0.77576 1.18996 1.21131 1.18999 0.91546 0.94293 0.90805 0.89602 0.93900 0.91611 0.90699 0.81486 0.77980 0.75566 0.92761 0.92758 0.91342 0.91372 0.98852 0.98843 0.92774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 9.09 71.98 0.65 -1.84 16 2 C -0.08 -1.76 3.07 -11.54 -0.04 -1.80 16 3 C -0.13 -2.39 8.99 71.98 0.65 -1.74 16 4 C -0.01 -0.24 4.72 -20.41 -0.10 -0.33 16 5 C -0.16 -2.41 9.18 21.08 0.19 -2.22 16 6 C -0.21 -2.71 10.92 66.81 0.73 -1.98 16 7 S 0.22 3.76 22.17 -56.49 -1.25 2.51 16 8 C -0.31 -7.96 6.45 24.07 0.16 -7.80 16 9 C 0.58 19.05 7.77 86.42 0.67 19.72 16 10 O -0.57 -22.42 14.00 -4.34 -0.06 -22.48 16 11 N -0.71 -22.00 5.55 -467.17 -2.59 -24.59 16 12 C 0.13 4.84 5.67 86.38 0.49 5.33 16 13 C -0.10 -4.07 5.27 30.59 0.16 -3.91 16 14 C 0.03 1.31 4.97 29.85 0.15 1.46 16 15 C -0.54 -30.50 9.11 25.60 0.23 -30.27 16 16 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 17 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 18 N -0.94 -57.42 13.29 21.45 0.28 -57.13 16 19 Si 0.97 43.90 29.54 68.60 2.03 45.93 16 20 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 21 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 22 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 23 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.07 1.04 8.00 -2.39 -0.02 1.03 16 26 H 0.09 2.68 4.95 -2.39 -0.01 2.67 16 27 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.07 0.99 7.50 -2.39 -0.02 0.97 16 30 H 0.17 1.72 7.67 -2.91 -0.02 1.70 16 31 H 0.20 1.17 8.06 -2.91 -0.02 1.14 16 32 H 0.41 10.24 7.61 -92.71 -0.71 9.53 16 33 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 37 H -0.01 -0.40 8.14 -2.39 -0.02 -0.41 16 38 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 39 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -70.36 337.79 3.15 -67.21 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 0.33 Total: 13.64 kcal Atomic # 6 Polarization: -29.50 SS G_CDS: 4.41 Total: -25.08 kcal Atomic # 7 Polarization: -79.41 SS G_CDS: -2.31 Total: -81.72 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -0.06 Total: -22.48 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 16 Polarization: 3.76 SS G_CDS: -1.25 Total: 2.51 kcal Total: -70.36 3.15 -67.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349300679.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.255 kcal (2) G-P(sol) polarization free energy of solvation -70.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds