Wall clock time and date at job start Tue Mar 31 2020 05:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50697 * 109.47120 * 2 1 4 4 C 1.37478 * 122.44755 * 265.28914 * 3 2 1 5 5 C 1.36649 * 113.29534 * 180.17787 * 4 3 2 6 6 C 1.46579 * 125.45521 * 179.83825 * 5 4 3 7 7 O 1.21699 * 120.00135 * 351.76356 * 6 5 4 8 8 N 1.34778 * 119.99968 * 171.76536 * 6 5 4 9 9 C 1.46502 * 119.99754 * 0.88785 * 8 6 5 10 10 C 1.46500 * 120.00424 * 180.88838 * 8 6 5 11 11 H 1.09005 * 109.46477 * 0.02562 * 10 8 6 12 12 C 1.53000 * 109.47080 * 240.00124 * 10 8 6 13 13 C 1.50703 * 109.46984 * 119.99837 * 10 8 6 14 14 H 1.07995 * 120.00359 * 0.02562 * 13 10 8 15 15 C 1.37880 * 119.99604 * 180.02562 * 13 10 8 16 16 N 1.31512 * 120.00146 * 0.02562 * 15 13 10 17 17 Si 1.86802 * 119.99761 * 180.02562 * 15 13 10 18 18 H 1.48497 * 109.46832 * 90.00066 * 17 15 13 19 19 H 1.48498 * 109.46949 * 210.00080 * 17 15 13 20 20 H 1.48498 * 109.47166 * 329.99878 * 17 15 13 21 21 S 1.75832 * 109.08413 * 359.57931 * 5 4 3 22 22 C 1.33810 * 122.45330 * 84.99847 * 3 2 1 23 23 C 1.50705 * 124.52358 * 0.04383 * 22 3 2 24 24 H 1.09001 * 109.46820 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46918 * 300.00454 * 1 2 3 26 26 H 1.09001 * 109.46687 * 60.00305 * 1 2 3 27 27 H 1.09000 * 109.46918 * 239.99546 * 2 1 3 28 28 H 1.09001 * 109.46687 * 119.99695 * 2 1 3 29 29 H 1.07993 * 123.34988 * 0.02562 * 4 3 2 30 30 H 1.09007 * 109.47071 * 83.55827 * 9 8 6 31 31 H 1.08995 * 109.47340 * 323.56071 * 9 8 6 32 32 H 1.08997 * 109.47037 * 203.55705 * 9 8 6 33 33 H 1.09007 * 109.46652 * 179.97438 * 12 10 8 34 34 H 1.08995 * 109.47019 * 299.99243 * 12 10 8 35 35 H 1.09003 * 109.46995 * 59.99920 * 12 10 8 36 36 H 0.97005 * 120.00206 * 179.97438 * 16 15 13 37 37 H 1.08991 * 109.47449 * 180.02562 * 23 22 3 38 38 H 1.09007 * 109.46852 * 300.00272 * 23 22 3 39 39 H 1.09003 * 109.46894 * 59.99515 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3681 2.0845 -1.1562 5 6 2.8046 3.3610 -0.9393 6 6 3.2326 4.3015 -1.9790 7 8 3.3598 3.9217 -3.1281 8 7 3.4853 5.5869 -1.6623 9 6 3.3510 6.0396 -0.2754 10 6 3.8942 6.5315 -2.7047 11 1 3.9383 6.0166 -3.6645 12 6 5.2741 7.0990 -2.3659 13 6 2.8941 7.6561 -2.7840 14 1 2.0396 7.6664 -2.1237 15 6 3.0701 8.6718 -3.6997 16 7 4.1103 8.6590 -4.5042 17 14 1.8308 10.0661 -3.7975 18 1 2.2414 11.1586 -2.8793 19 1 1.7759 10.5829 -5.1886 20 1 0.4898 9.5652 -3.4023 21 16 2.7636 3.6972 0.7861 22 6 2.1789 2.1306 1.1248 23 6 1.8693 1.6149 2.5066 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.2964 1.6402 -2.1380 30 1 4.2657 5.8108 0.2717 31 1 2.5099 5.5292 0.1936 32 1 3.1778 7.1156 -0.2596 33 1 5.5785 7.8015 -3.1419 34 1 5.2295 7.6140 -1.4063 35 1 5.9974 6.2856 -2.3086 36 1 4.2339 9.3734 -5.1486 37 1 2.0760 2.3941 3.2401 38 1 0.8176 1.3337 2.5623 39 1 2.4899 0.7437 2.7168 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349322911.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:25 Heat of formation + Delta-G solvation = -14.494219 kcal Electronic energy + Delta-G solvation = -19952.236912 eV Core-core repulsion = 16986.286873 eV Total energy + Delta-G solvation = -2965.950039 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.29246 -38.29989 -35.35984 -33.11490 -32.60053 -31.50952 -29.62891 -26.87500 -26.28968 -25.23502 -23.87572 -23.24065 -20.77758 -19.04990 -18.04878 -17.48657 -16.47859 -15.65193 -15.50247 -14.94340 -14.61569 -14.24968 -14.02803 -13.80668 -13.30960 -13.00142 -12.75039 -12.67675 -12.48618 -12.43354 -12.14962 -11.75800 -11.62989 -11.51363 -11.35356 -11.09340 -10.99699 -10.84647 -10.70972 -10.31469 -10.19616 -10.06624 -9.26178 -9.10826 -8.45698 -8.42043 -8.16098 -7.62199 -6.09351 -4.17770 0.81748 1.74261 2.16421 2.60421 3.25518 3.32891 3.35800 3.79137 3.91795 4.38269 4.81450 4.89771 5.03691 5.18309 5.22090 5.23083 5.27953 5.41265 5.53622 5.64661 5.65382 5.75055 5.82189 5.84008 5.91182 6.14581 6.16088 6.24465 6.49308 6.64303 6.73964 6.81510 7.03095 7.36264 7.49776 7.68390 7.98679 8.15668 8.43748 8.79144 8.97535 9.48699 10.96037 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.027614 B = 0.004317 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.728901 B = 6484.454578 C = 6558.422216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.062 4.062 3 C -0.120 4.120 4 C -0.062 4.062 5 C -0.248 4.248 6 C 0.574 3.426 7 O -0.541 6.541 8 N -0.585 5.585 9 C 0.072 3.928 10 C 0.259 3.741 11 H 0.066 0.934 12 C -0.147 4.147 13 C -0.528 4.528 14 H 0.060 0.940 15 C 0.066 3.934 16 N -0.886 5.886 17 Si 0.899 3.101 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.274 1.274 21 S 0.221 5.779 22 C -0.242 4.242 23 C -0.077 4.077 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.147 0.853 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.030 0.970 35 H 0.012 0.988 36 H 0.264 0.736 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.747 -12.350 14.306 19.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.101 4.101 3 C -0.132 4.132 4 C -0.094 4.094 5 C -0.369 4.369 6 C 0.360 3.640 7 O -0.421 6.421 8 N -0.316 5.316 9 C -0.074 4.074 10 C 0.159 3.841 11 H 0.084 0.916 12 C -0.205 4.205 13 C -0.567 4.567 14 H 0.078 0.922 15 C -0.137 4.137 16 N -0.524 5.524 17 Si 0.727 3.273 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.199 1.199 21 S 0.491 5.509 22 C -0.361 4.361 23 C -0.135 4.135 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.164 0.836 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.118 0.882 33 H 0.113 0.887 34 H 0.049 0.951 35 H 0.031 0.969 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.216 -11.148 14.456 18.537 hybrid contribution -1.056 -0.427 -0.858 1.426 sum -4.272 -11.575 13.598 18.361 Atomic orbital electron populations 1.21727 0.95093 1.01277 1.02247 1.20201 0.95776 0.91784 1.02388 1.18529 1.05131 0.98018 0.91560 1.20513 0.97222 0.92216 0.99481 1.24840 1.14769 1.00351 0.96907 1.17028 0.78393 0.81748 0.86809 1.90774 1.54111 1.77475 1.19788 1.48148 1.65146 1.08731 1.09539 1.21817 0.99624 1.02884 0.83107 1.19020 0.92180 0.86519 0.86382 0.91615 1.22098 0.96902 0.99893 1.01612 1.21309 1.08754 1.06636 1.20009 0.92165 1.24887 0.95643 0.98056 0.95083 1.69878 1.27977 1.33322 1.21261 0.86478 0.81504 0.81921 0.77413 1.20563 1.21056 1.19901 1.83652 1.60906 1.06741 0.99559 1.24678 1.09138 1.02534 0.99710 1.20267 1.01972 1.00893 0.90388 0.92668 0.92768 0.92445 0.91187 0.91396 0.83551 0.92864 0.92338 0.88182 0.88664 0.95077 0.96875 0.92612 0.91778 0.91006 0.90963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.90 37.16 0.37 -0.99 16 2 C -0.06 -0.64 5.83 -27.88 -0.16 -0.80 16 3 C -0.12 -1.58 5.04 -106.45 -0.54 -2.12 16 4 C -0.06 -0.99 9.79 -40.43 -0.40 -1.39 16 5 C -0.25 -4.44 6.25 -36.79 -0.23 -4.67 16 6 C 0.57 12.86 7.64 -12.90 -0.10 12.77 16 7 O -0.54 -14.11 16.18 5.19 0.08 -14.03 16 8 N -0.59 -12.99 2.75 -176.84 -0.49 -13.47 16 9 C 0.07 1.25 7.87 59.85 0.47 1.72 16 10 C 0.26 6.69 2.63 -69.08 -0.18 6.51 16 11 H 0.07 1.97 6.90 -51.93 -0.36 1.61 16 12 C -0.15 -3.52 8.97 37.16 0.33 -3.18 16 13 C -0.53 -14.27 7.95 -34.44 -0.27 -14.55 16 14 H 0.06 1.60 7.44 -52.49 -0.39 1.21 16 15 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 16 N -0.89 -25.00 11.32 55.43 0.63 -24.37 16 17 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 S 0.22 3.01 17.82 -107.50 -1.92 1.10 16 22 C -0.24 -2.99 6.28 -35.86 -0.23 -3.21 16 23 C -0.08 -0.68 9.44 36.01 0.34 -0.34 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.49 7.41 -51.93 -0.38 0.11 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.70 8.11 -51.93 -0.42 0.27 16 28 H 0.07 0.60 7.45 -51.93 -0.39 0.22 16 29 H 0.15 2.36 8.06 -52.49 -0.42 1.93 16 30 H 0.05 0.81 7.83 -51.92 -0.41 0.40 16 31 H 0.06 0.91 4.48 -22.35 -0.10 0.81 16 32 H 0.10 1.78 7.13 -51.93 -0.37 1.41 16 33 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 34 H 0.03 0.68 7.67 -51.93 -0.40 0.28 16 35 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 37 H 0.06 0.50 8.11 -51.93 -0.42 0.08 16 38 H 0.07 0.57 7.41 -51.93 -0.38 0.19 16 39 H 0.07 0.57 7.92 -51.93 -0.41 0.15 16 LS Contribution 326.53 15.07 4.92 4.92 Total: -1.00 -31.00 326.53 -8.05 -39.05 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -5.57 Total: -0.55 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: -0.69 Total: -8.57 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: 0.14 Total: -37.84 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: 0.08 Total: -14.03 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: 3.01 SS G_CDS: -1.92 Total: 1.10 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.00 -8.05 -39.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349322911.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.554 kcal (2) G-P(sol) polarization free energy of solvation -30.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds