Wall clock time and date at job start Tue Mar 31 2020 05:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50695 * 109.46907 * 2 1 4 4 C 1.37467 * 122.45183 * 265.02403 * 3 2 1 5 5 C 1.36653 * 113.29944 * 180.02562 * 4 3 2 6 6 C 1.46576 * 125.46181 * 179.97438 * 5 4 3 7 7 O 1.21705 * 119.99814 * 351.40297 * 6 5 4 8 8 N 1.34770 * 120.00437 * 171.39476 * 6 5 4 9 9 C 1.46502 * 119.99868 * 0.13919 * 8 6 5 10 10 C 1.46505 * 120.00650 * 180.13756 * 8 6 5 11 11 H 1.09000 * 109.46443 * 0.02562 * 10 8 6 12 12 C 1.52996 * 109.47315 * 120.00043 * 10 8 6 13 13 C 1.50701 * 109.47210 * 240.00374 * 10 8 6 14 14 H 1.08008 * 119.99868 * 359.97438 * 13 10 8 15 15 C 1.37872 * 120.00085 * 179.97438 * 13 10 8 16 16 N 1.31517 * 119.99871 * 0.02562 * 15 13 10 17 17 Si 1.86804 * 120.00244 * 180.02562 * 15 13 10 18 18 H 1.48502 * 109.46966 * 60.00037 * 17 15 13 19 19 H 1.48495 * 109.46985 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46738 * 300.00276 * 17 15 13 21 21 S 1.75830 * 109.08154 * 0.02562 * 5 4 3 22 22 C 1.33818 * 122.44659 * 84.74191 * 3 2 1 23 23 C 1.50700 * 124.52474 * 359.97438 * 22 3 2 24 24 H 1.08996 * 109.47170 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46845 * 300.00024 * 1 2 3 26 26 H 1.08998 * 109.46986 * 59.99662 * 1 2 3 27 27 H 1.08999 * 109.46845 * 239.99976 * 2 1 3 28 28 H 1.08998 * 109.46986 * 120.00337 * 2 1 3 29 29 H 1.08000 * 123.35076 * 359.97438 * 4 3 2 30 30 H 1.09004 * 109.47112 * 83.45646 * 9 8 6 31 31 H 1.09000 * 109.47407 * 203.45521 * 9 8 6 32 32 H 1.09000 * 109.47212 * 323.45926 * 9 8 6 33 33 H 1.09005 * 109.47175 * 300.00298 * 12 10 8 34 34 H 1.08996 * 109.47251 * 60.00085 * 12 10 8 35 35 H 1.08997 * 109.46977 * 180.02562 * 12 10 8 36 36 H 0.96996 * 119.99795 * 180.02562 * 16 15 13 37 37 H 1.09003 * 109.47092 * 89.99860 * 23 22 3 38 38 H 1.09001 * 109.47354 * 210.00012 * 23 22 3 39 39 H 1.08997 * 109.46704 * 330.00102 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3731 2.0827 -1.1556 5 6 2.8055 3.3608 -0.9390 6 6 3.2346 4.3010 -1.9785 7 8 3.3731 3.9184 -3.1255 8 7 3.4755 5.5892 -1.6641 9 6 3.3116 6.0491 -0.2829 10 6 3.9015 6.5296 -2.7036 11 1 3.9670 6.0095 -3.6592 12 6 2.8834 7.6666 -2.8110 13 6 5.2514 7.0962 -2.3459 14 1 5.7427 6.7870 -1.4351 15 6 5.8592 8.0092 -3.1812 16 7 5.2607 8.3861 -4.2900 17 14 7.5327 8.7110 -2.7382 18 1 8.5205 7.6071 -2.6340 19 1 7.9649 9.6634 -3.7924 20 1 7.4433 9.4198 -1.4363 21 16 2.7661 3.6963 0.7865 22 6 2.1741 2.1322 1.1245 23 6 1.8572 1.6189 2.5055 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 2.3065 1.6367 -2.1370 30 1 4.2153 5.8256 0.2842 31 1 3.1354 7.1248 -0.2766 32 1 2.4622 5.5391 0.1715 33 1 1.9070 7.2568 -3.0697 34 1 2.8174 8.1867 -1.8554 35 1 3.2001 8.3660 -3.5846 36 1 5.6884 9.0282 -4.8779 37 1 2.7455 1.1537 2.9329 38 1 1.5416 2.4486 3.1380 39 1 1.0554 0.8831 2.4445 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349322913.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:28 Heat of formation + Delta-G solvation = -13.570604 kcal Electronic energy + Delta-G solvation = -19945.341442 eV Core-core repulsion = 16979.431454 eV Total energy + Delta-G solvation = -2965.909988 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.29857 -38.31325 -35.36420 -33.12059 -32.61883 -31.48926 -29.62663 -26.88177 -26.32157 -25.22001 -23.87695 -23.23895 -20.77179 -19.04708 -18.04679 -17.48737 -16.48438 -15.67337 -15.49456 -14.88942 -14.63878 -14.29682 -14.04640 -13.84231 -13.24292 -13.02740 -12.71017 -12.69521 -12.50140 -12.45960 -12.19306 -11.76079 -11.60679 -11.45797 -11.36215 -11.07614 -11.02907 -10.84978 -10.71874 -10.28471 -10.20491 -10.07304 -9.25089 -9.12137 -8.44650 -8.41916 -8.16461 -7.61891 -6.08361 -4.16777 0.80992 1.73572 2.17008 2.59472 3.27904 3.33078 3.34905 3.83639 3.86982 4.39239 4.81209 4.89160 5.02602 5.17031 5.21438 5.24554 5.28843 5.41217 5.51591 5.62631 5.64555 5.75063 5.80995 5.88787 5.90451 6.13314 6.14649 6.18522 6.48538 6.63610 6.74232 6.79975 7.02154 7.37239 7.48503 7.68838 7.98926 8.15923 8.44310 8.79881 8.97676 9.49674 10.96996 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.031160 B = 0.004310 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.373173 B = 6494.860297 C = 6814.237211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.063 4.063 3 C -0.119 4.119 4 C -0.063 4.063 5 C -0.247 4.247 6 C 0.574 3.426 7 O -0.541 6.541 8 N -0.585 5.585 9 C 0.073 3.927 10 C 0.259 3.741 11 H 0.066 0.934 12 C -0.148 4.148 13 C -0.528 4.528 14 H 0.059 0.941 15 C 0.066 3.934 16 N -0.887 5.887 17 Si 0.900 3.100 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.276 1.276 21 S 0.221 5.779 22 C -0.242 4.242 23 C -0.080 4.080 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.147 0.853 30 H 0.058 0.942 31 H 0.093 0.907 32 H 0.058 0.942 33 H 0.013 0.987 34 H 0.031 0.969 35 H 0.096 0.904 36 H 0.264 0.736 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.418 -11.289 13.450 19.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.102 4.102 3 C -0.131 4.131 4 C -0.095 4.095 5 C -0.368 4.368 6 C 0.360 3.640 7 O -0.421 6.421 8 N -0.316 5.316 9 C -0.073 4.073 10 C 0.159 3.841 11 H 0.084 0.916 12 C -0.206 4.206 13 C -0.566 4.566 14 H 0.077 0.923 15 C -0.137 4.137 16 N -0.525 5.525 17 Si 0.727 3.273 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.202 1.202 21 S 0.491 5.509 22 C -0.360 4.360 23 C -0.138 4.138 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.165 0.835 30 H 0.076 0.924 31 H 0.112 0.888 32 H 0.076 0.924 33 H 0.032 0.968 34 H 0.050 0.950 35 H 0.114 0.886 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.939 -10.068 13.589 18.683 hybrid contribution 0.577 -0.811 -0.554 1.139 sum -7.362 -10.879 13.035 18.506 Atomic orbital electron populations 1.21746 0.95099 1.01293 1.02231 1.20211 0.95749 0.91807 1.02464 1.18538 1.05079 0.97961 0.91559 1.20510 0.97373 0.92166 0.99496 1.24846 1.14623 1.00420 0.96898 1.17016 0.78388 0.81773 0.86825 1.90777 1.53984 1.77341 1.20043 1.48144 1.64592 1.08824 1.10018 1.21776 0.99864 1.02089 0.83540 1.19016 0.92600 0.85444 0.87009 0.91606 1.22113 0.96047 1.00772 1.01689 1.21272 1.02528 1.24947 1.07877 0.92265 1.24885 0.97876 0.96166 0.94753 1.69868 1.38254 1.32668 1.11757 0.86535 0.83900 0.78819 0.78024 1.20213 1.21139 1.20187 1.83654 1.60611 1.07043 0.99551 1.24640 1.09062 1.02550 0.99744 1.20308 1.01952 1.01056 0.90533 0.92660 0.92730 0.92454 0.91120 0.91353 0.83542 0.92390 0.88834 0.92421 0.96824 0.95036 0.88594 0.92570 0.91026 0.91551 0.90905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.82 37.16 0.37 -0.95 16 2 C -0.06 -0.64 5.54 -27.88 -0.15 -0.79 16 3 C -0.12 -1.56 5.04 -106.46 -0.54 -2.10 16 4 C -0.06 -1.00 9.79 -40.44 -0.40 -1.40 16 5 C -0.25 -4.42 6.23 -36.79 -0.23 -4.65 16 6 C 0.57 12.85 7.64 -12.90 -0.10 12.75 16 7 O -0.54 -14.11 16.18 5.18 0.08 -14.03 16 8 N -0.59 -13.00 2.75 -176.84 -0.49 -13.48 16 9 C 0.07 1.28 8.12 59.85 0.49 1.76 16 10 C 0.26 6.70 2.63 -69.08 -0.18 6.52 16 11 H 0.07 1.97 6.90 -51.93 -0.36 1.61 16 12 C -0.15 -3.54 8.96 37.16 0.33 -3.20 16 13 C -0.53 -14.32 8.37 -34.44 -0.29 -14.61 16 14 H 0.06 1.58 7.65 -52.48 -0.40 1.18 16 15 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 16 N -0.89 -25.07 11.32 55.43 0.63 -24.45 16 17 Si 0.90 21.04 29.54 -169.99 -5.02 16.01 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 21 S 0.22 3.03 17.85 -107.50 -1.92 1.11 16 22 C -0.24 -2.97 6.28 -35.86 -0.23 -3.20 16 23 C -0.08 -0.71 9.71 36.01 0.35 -0.36 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 0.48 7.21 -51.93 -0.37 0.10 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 28 H 0.07 0.61 7.48 -51.93 -0.39 0.22 16 29 H 0.15 2.33 8.06 -52.49 -0.42 1.91 16 30 H 0.06 0.96 7.76 -51.93 -0.40 0.55 16 31 H 0.09 1.60 6.45 -51.93 -0.33 1.26 16 32 H 0.06 0.87 4.62 -23.25 -0.11 0.76 16 33 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.03 0.68 6.67 -51.93 -0.35 0.34 16 35 H 0.10 2.51 6.07 -51.93 -0.32 2.19 16 36 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.57 6.37 -51.93 -0.33 0.24 16 LS Contribution 324.72 15.07 4.89 4.89 Total: -1.00 -31.08 324.72 -7.94 -39.02 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -5.45 Total: -0.54 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: -0.67 Total: -8.53 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.14 Total: -37.93 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: 0.08 Total: -14.03 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 3.03 SS G_CDS: -1.92 Total: 1.11 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.08 -7.94 -39.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349322913.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.451 kcal (2) G-P(sol) polarization free energy of solvation -31.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds