Wall clock time and date at job start Tue Mar 31 2020 05:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50695 * 109.46907 * 2 1 4 4 C 1.37467 * 122.45183 * 265.02403 * 3 2 1 5 5 C 1.36653 * 113.29944 * 180.02562 * 4 3 2 6 6 C 1.46576 * 125.46181 * 179.97438 * 5 4 3 7 7 O 1.21705 * 119.99814 * 351.40297 * 6 5 4 8 8 N 1.34770 * 120.00437 * 171.39476 * 6 5 4 9 9 C 1.46502 * 119.99868 * 0.13919 * 8 6 5 10 10 C 1.46505 * 120.00650 * 180.13756 * 8 6 5 11 11 H 1.09000 * 109.46443 * 0.02562 * 10 8 6 12 12 C 1.52996 * 109.47315 * 120.00043 * 10 8 6 13 13 C 1.50701 * 109.47210 * 240.00374 * 10 8 6 14 14 H 1.08008 * 119.99868 * 359.97438 * 13 10 8 15 15 C 1.37872 * 120.00085 * 179.97438 * 13 10 8 16 16 N 1.31517 * 119.99871 * 0.02562 * 15 13 10 17 17 Si 1.86804 * 120.00244 * 180.02562 * 15 13 10 18 18 H 1.48502 * 109.46966 * 60.00037 * 17 15 13 19 19 H 1.48495 * 109.46985 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46738 * 300.00276 * 17 15 13 21 21 S 1.75830 * 109.08154 * 0.02562 * 5 4 3 22 22 C 1.33818 * 122.44659 * 84.74191 * 3 2 1 23 23 C 1.50700 * 124.52474 * 359.97438 * 22 3 2 24 24 H 1.08996 * 109.47170 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46845 * 300.00024 * 1 2 3 26 26 H 1.08998 * 109.46986 * 59.99662 * 1 2 3 27 27 H 1.08999 * 109.46845 * 239.99976 * 2 1 3 28 28 H 1.08998 * 109.46986 * 120.00337 * 2 1 3 29 29 H 1.08000 * 123.35076 * 359.97438 * 4 3 2 30 30 H 1.09004 * 109.47112 * 83.45646 * 9 8 6 31 31 H 1.09000 * 109.47407 * 203.45521 * 9 8 6 32 32 H 1.09000 * 109.47212 * 323.45926 * 9 8 6 33 33 H 1.09005 * 109.47175 * 300.00298 * 12 10 8 34 34 H 1.08996 * 109.47251 * 60.00085 * 12 10 8 35 35 H 1.08997 * 109.46977 * 180.02562 * 12 10 8 36 36 H 0.96996 * 119.99795 * 180.02562 * 16 15 13 37 37 H 1.09003 * 109.47092 * 89.99860 * 23 22 3 38 38 H 1.09001 * 109.47354 * 210.00012 * 23 22 3 39 39 H 1.08997 * 109.46704 * 330.00102 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3731 2.0827 -1.1556 5 6 2.8055 3.3608 -0.9390 6 6 3.2346 4.3010 -1.9785 7 8 3.3731 3.9184 -3.1255 8 7 3.4755 5.5892 -1.6641 9 6 3.3116 6.0491 -0.2829 10 6 3.9015 6.5296 -2.7036 11 1 3.9670 6.0095 -3.6592 12 6 2.8834 7.6666 -2.8110 13 6 5.2514 7.0962 -2.3459 14 1 5.7427 6.7870 -1.4351 15 6 5.8592 8.0092 -3.1812 16 7 5.2607 8.3861 -4.2900 17 14 7.5327 8.7110 -2.7382 18 1 8.5205 7.6071 -2.6340 19 1 7.9649 9.6634 -3.7924 20 1 7.4433 9.4198 -1.4363 21 16 2.7661 3.6963 0.7865 22 6 2.1741 2.1322 1.1245 23 6 1.8572 1.6189 2.5055 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 2.3065 1.6367 -2.1370 30 1 4.2153 5.8256 0.2842 31 1 3.1354 7.1248 -0.2766 32 1 2.4622 5.5391 0.1715 33 1 1.9070 7.2568 -3.0697 34 1 2.8174 8.1867 -1.8554 35 1 3.2001 8.3660 -3.5846 36 1 5.6884 9.0282 -4.8779 37 1 2.7455 1.1537 2.9329 38 1 1.5416 2.4486 3.1380 39 1 1.0554 0.8831 2.4445 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349322913.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:28 Heat of formation + Delta-G solvation = -31.736198 kcal Electronic energy + Delta-G solvation = -19946.129161 eV Core-core repulsion = 16979.431454 eV Total energy + Delta-G solvation = -2966.697707 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.89875 -39.52053 -37.20984 -34.96090 -33.79717 -32.40121 -31.45217 -28.13337 -27.78310 -27.29452 -24.75229 -24.58706 -22.37381 -20.50926 -19.28099 -18.97767 -18.40403 -17.31857 -16.87104 -16.51551 -16.30416 -15.50057 -15.08253 -15.00305 -14.56348 -14.43223 -14.25046 -14.12476 -13.57255 -13.53448 -13.43816 -13.17307 -12.98164 -12.80768 -12.79027 -12.72937 -12.47782 -12.30766 -12.20662 -12.13219 -11.79620 -11.26052 -11.18374 -10.91246 -10.53620 -9.75649 -9.31452 -9.20450 -8.16303 -6.33736 -0.42137 0.54414 1.04660 1.39757 1.42288 1.44463 1.51954 2.19714 2.23927 2.45297 3.11590 3.63481 3.91228 4.08558 4.18631 4.21789 4.43833 4.49199 4.55534 4.63147 4.69426 4.75796 4.79282 4.83969 4.88084 4.97357 5.01969 5.02329 5.13751 5.18371 5.36800 5.41025 5.48944 5.55297 5.60921 5.63031 5.98142 6.11174 6.64901 6.72611 7.19324 7.39548 8.88272 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.031160 B = 0.004310 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.373173 B = 6494.860297 C = 6814.237211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.061 4.061 3 C -0.134 4.134 4 C -0.056 4.056 5 C -0.302 4.302 6 C 0.565 3.435 7 O -0.600 6.600 8 N -0.593 5.593 9 C 0.070 3.930 10 C 0.262 3.738 11 H 0.010 0.990 12 C -0.133 4.133 13 C -0.542 4.542 14 H 0.061 0.939 15 C 0.017 3.983 16 N -0.917 5.917 17 Si 0.967 3.033 18 H -0.279 1.279 19 H -0.283 1.283 20 H -0.259 1.259 21 S 0.264 5.736 22 C -0.218 4.218 23 C -0.084 4.084 24 H 0.074 0.926 25 H 0.061 0.939 26 H 0.040 0.960 27 H 0.067 0.933 28 H 0.090 0.910 29 H 0.133 0.867 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.019 0.981 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.266 0.734 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.724 -12.138 17.324 22.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.100 4.100 3 C -0.145 4.145 4 C -0.090 4.090 5 C -0.421 4.421 6 C 0.354 3.646 7 O -0.484 6.484 8 N -0.322 5.322 9 C -0.074 4.074 10 C 0.161 3.839 11 H 0.028 0.972 12 C -0.192 4.192 13 C -0.580 4.580 14 H 0.079 0.921 15 C -0.183 4.183 16 N -0.555 5.555 17 Si 0.792 3.208 18 H -0.204 1.204 19 H -0.208 1.208 20 H -0.184 1.184 21 S 0.535 5.465 22 C -0.337 4.337 23 C -0.142 4.142 24 H 0.092 0.908 25 H 0.080 0.920 26 H 0.059 0.941 27 H 0.086 0.914 28 H 0.108 0.892 29 H 0.151 0.849 30 H 0.088 0.912 31 H 0.116 0.884 32 H 0.103 0.897 33 H 0.038 0.962 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.075 0.925 37 H 0.107 0.893 38 H 0.101 0.899 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.260 -10.902 17.513 22.222 hybrid contribution 0.612 -0.670 -1.693 1.921 sum -7.648 -11.573 15.820 21.040 Atomic orbital electron populations 1.21734 0.94152 1.02447 1.01787 1.20285 0.96479 0.89829 1.03449 1.18726 1.05659 0.99573 0.90535 1.20689 0.96218 0.91802 1.00310 1.24436 1.18512 1.00436 0.98745 1.17662 0.77421 0.82259 0.87245 1.90718 1.56527 1.78375 1.22787 1.48107 1.64402 1.08503 1.11210 1.22024 1.01659 1.02659 0.81081 1.18644 0.93375 0.85854 0.86068 0.97213 1.21902 0.95617 0.99681 1.01977 1.21512 1.03259 1.25172 1.08104 0.92056 1.25746 1.01569 0.96452 0.94524 1.70015 1.39815 1.33055 1.12642 0.85476 0.78952 0.77956 0.78442 1.20422 1.20784 1.18369 1.83207 1.59908 1.08019 0.95390 1.25155 1.05874 1.01286 1.01388 1.20530 1.03395 1.02213 0.88085 0.90751 0.91988 0.94084 0.91380 0.89187 0.84931 0.91204 0.88431 0.89746 0.96191 0.92874 0.90942 0.92501 0.89267 0.89877 0.89101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.82 71.99 0.71 -1.49 16 2 C -0.06 -1.08 5.54 29.85 0.17 -0.91 16 3 C -0.13 -3.24 5.04 -21.05 -0.11 -3.35 16 4 C -0.06 -1.80 9.79 21.72 0.21 -1.59 16 5 C -0.30 -10.92 6.23 24.08 0.15 -10.77 16 6 C 0.56 26.66 7.64 86.42 0.66 27.32 16 7 O -0.60 -33.87 16.18 -4.36 -0.07 -33.94 16 8 N -0.59 -27.18 2.75 -831.62 -2.29 -29.47 16 9 C 0.07 2.37 8.12 127.77 1.04 3.41 16 10 C 0.26 14.21 2.63 44.24 0.12 14.32 16 11 H 0.01 0.64 6.90 -2.39 -0.02 0.62 16 12 C -0.13 -6.57 8.96 71.98 0.64 -5.92 16 13 C -0.54 -30.09 8.37 25.60 0.21 -29.87 16 14 H 0.06 3.29 7.65 -2.91 -0.02 3.27 16 15 C 0.02 0.94 5.30 84.65 0.45 1.39 16 16 N -0.92 -53.36 11.32 21.45 0.24 -53.11 16 17 Si 0.97 43.27 29.54 68.60 2.03 45.30 16 18 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 19 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 20 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 21 S 0.26 6.61 17.85 -56.49 -1.01 5.60 16 22 C -0.22 -4.61 6.28 24.68 0.15 -4.46 16 23 C -0.08 -1.06 9.71 71.24 0.69 -0.37 16 24 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.06 0.85 7.21 -2.39 -0.02 0.84 16 26 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.07 1.24 8.10 -2.39 -0.02 1.22 16 28 H 0.09 1.22 7.48 -2.39 -0.02 1.20 16 29 H 0.13 4.52 8.06 -2.91 -0.02 4.49 16 30 H 0.07 2.20 7.76 -2.39 -0.02 2.18 16 31 H 0.10 3.20 6.45 -2.39 -0.02 3.19 16 32 H 0.09 2.38 4.62 -20.62 -0.10 2.29 16 33 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.05 2.32 6.67 -2.39 -0.02 2.31 16 35 H 0.07 3.92 6.07 -2.39 -0.01 3.91 16 36 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 37 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.09 0.91 6.37 -2.39 -0.02 0.89 16 Total: -1.00 -71.99 324.72 4.96 -67.03 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: 0.96 Total: 10.89 kcal Atomic # 6 Polarization: -17.40 SS G_CDS: 5.10 Total: -12.30 kcal Atomic # 7 Polarization: -80.54 SS G_CDS: -2.05 Total: -82.58 kcal Atomic # 8 Polarization: -33.87 SS G_CDS: -0.07 Total: -33.94 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 16 Polarization: 6.61 SS G_CDS: -1.01 Total: 5.60 kcal Total: -71.99 4.96 -67.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349322913.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.295 kcal (2) G-P(sol) polarization free energy of solvation -71.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds