Wall clock time and date at job start Tue Mar 31 2020 05:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32774 * 123.45879 * 2 1 4 4 S 1.75500 * 110.57366 * 179.73404 * 3 2 1 5 5 C 1.70444 * 92.44757 * 359.97438 * 4 3 2 6 6 C 1.36013 * 110.81665 * 359.97438 * 5 4 3 7 7 C 1.47183 * 123.45867 * 180.02562 * 6 5 4 8 8 O 1.21639 * 119.99781 * 179.97438 * 7 6 5 9 9 N 1.34780 * 120.00403 * 359.97438 * 7 6 5 10 10 C 1.46502 * 120.00145 * 180.02562 * 9 7 6 11 11 C 1.52991 * 109.46909 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47825 * 299.99776 * 11 10 9 13 13 C 1.53003 * 109.47312 * 60.00066 * 11 10 9 14 14 C 1.53004 * 109.47132 * 179.97438 * 11 10 9 15 15 C 1.50697 * 109.47256 * 179.97438 * 14 11 10 16 16 H 1.07995 * 120.00122 * 0.02562 * 15 14 11 17 17 C 1.37882 * 120.00065 * 180.02562 * 15 14 11 18 18 N 1.31517 * 119.99721 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00085 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47005 * 60.00387 * 19 17 15 21 21 H 1.48501 * 109.47316 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47587 * 300.00710 * 19 17 15 23 23 H 1.09001 * 109.47079 * 90.02022 * 1 2 3 24 24 H 1.08993 * 109.47197 * 210.02593 * 1 2 3 25 25 H 1.09000 * 109.47152 * 330.02519 * 1 2 3 26 26 H 1.08004 * 124.70891 * 359.75337 * 3 2 1 27 27 H 1.08003 * 124.59179 * 179.97438 * 5 4 3 28 28 H 0.96998 * 119.99383 * 359.97438 * 9 7 6 29 29 H 1.09001 * 109.47092 * 300.00032 * 10 9 7 30 30 H 1.09004 * 109.46950 * 59.99916 * 10 9 7 31 31 H 1.09007 * 109.46719 * 59.99915 * 12 11 10 32 32 H 1.08998 * 109.47847 * 180.02562 * 12 11 10 33 33 H 1.09004 * 109.47108 * 300.00574 * 12 11 10 34 34 H 1.09001 * 109.46934 * 59.99651 * 13 11 10 35 35 H 1.08998 * 109.47616 * 179.97438 * 13 11 10 36 36 H 1.08997 * 109.46881 * 299.99977 * 13 11 10 37 37 H 1.09001 * 109.47374 * 300.00508 * 14 11 10 38 38 H 1.09004 * 109.46445 * 60.00256 * 14 11 10 39 39 H 0.96995 * 119.99682 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2390 1.1077 0.0000 4 16 3.9498 0.7164 0.0076 5 6 3.6410 -0.9599 0.0115 6 6 2.3032 -1.2049 0.0077 7 6 1.7262 -2.5589 0.0103 8 8 0.5187 -2.7054 0.0071 9 7 2.5357 -3.6365 0.0162 10 6 1.9614 -4.9842 0.0182 11 6 3.0884 -6.0188 0.0243 12 6 3.9556 -5.8360 -1.2228 13 6 3.9482 -5.8290 1.2756 14 6 2.4886 -7.4264 0.0270 15 6 3.5987 -8.4455 0.0325 16 1 4.6290 -8.1217 0.0342 17 6 3.2990 -9.7914 0.0351 18 7 2.0444 -10.1857 0.0325 19 14 4.6751 -11.0546 0.0411 20 1 5.5105 -10.8707 1.2550 21 1 4.0929 -12.4207 0.0427 22 1 5.5158 -10.8766 -1.1699 23 1 -0.3633 -0.0004 -1.0277 24 1 -0.3633 -0.8897 0.5142 25 1 -0.3633 0.8902 0.5134 26 1 1.8374 2.1103 -0.0038 27 1 4.4043 -1.7239 0.0163 28 1 3.4986 -3.5196 0.0183 29 1 1.3432 -5.1144 0.9065 30 1 1.3492 -5.1196 -0.8735 31 1 4.3829 -4.8332 -1.2243 32 1 4.7583 -6.5734 -1.2187 33 1 3.3431 -5.9712 -2.1143 34 1 3.3304 -5.9594 2.1641 35 1 4.7509 -6.5664 1.2803 36 1 4.3755 -4.8263 1.2741 37 1 1.8710 -7.5565 0.9157 38 1 1.8759 -7.5619 -0.8643 39 1 1.8336 -11.1324 0.0340 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359769482.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:19 Heat of formation + Delta-G solvation = -29.658603 kcal Electronic energy + Delta-G solvation = -19666.946530 eV Core-core repulsion = 16700.338914 eV Total energy + Delta-G solvation = -2966.607616 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.95548 -37.71243 -36.66808 -33.77085 -32.24818 -31.00298 -27.94012 -27.11515 -26.54145 -26.20882 -24.25800 -22.78250 -20.67691 -19.28419 -18.09218 -17.71159 -16.84954 -16.32299 -15.23880 -15.18380 -14.52800 -14.36377 -14.02691 -13.43982 -13.35612 -13.28882 -13.10202 -12.79709 -12.67581 -12.26985 -12.06929 -12.06328 -11.95298 -11.17711 -11.07036 -11.02144 -10.88404 -10.64948 -10.42576 -10.28498 -9.89715 -9.72713 -9.18731 -9.10083 -8.95149 -8.79193 -8.45469 -8.36694 -6.00875 -4.02398 0.60970 1.36119 1.72689 1.89575 3.31189 3.36745 3.37175 3.43405 3.44673 4.44238 4.48835 4.93166 5.05239 5.14010 5.34461 5.41171 5.48166 5.55534 5.60304 5.69518 5.71806 5.87791 6.09287 6.13654 6.20008 6.25998 6.36836 6.43058 6.56673 6.60116 6.74513 7.03296 7.04966 7.10315 7.62377 7.72479 7.74871 7.97561 8.37828 8.42067 9.02116 9.60709 11.10572 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.035297 B = 0.003390 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.086531 B = 8257.332958 C = 8848.754672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.050 4.050 3 C -0.247 4.247 4 S 0.174 5.826 5 C -0.211 4.211 6 C -0.147 4.147 7 C 0.569 3.431 8 O -0.537 6.537 9 N -0.715 5.715 10 C 0.129 3.871 11 C -0.073 4.073 12 C -0.127 4.127 13 C -0.127 4.127 14 C 0.037 3.963 15 C -0.513 4.513 16 H 0.059 0.941 17 C 0.057 3.943 18 N -0.894 5.894 19 Si 0.889 3.111 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.278 1.278 23 H 0.071 0.929 24 H 0.094 0.906 25 H 0.061 0.939 26 H 0.167 0.833 27 H 0.169 0.831 28 H 0.396 0.604 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.027 0.973 32 H 0.067 0.933 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.067 0.933 36 H 0.027 0.973 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.702 22.070 -0.016 22.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.061 4.061 3 C -0.382 4.382 4 S 0.441 5.559 5 C -0.350 4.350 6 C -0.165 4.165 7 C 0.354 3.646 8 O -0.416 6.416 9 N -0.366 5.366 10 C 0.006 3.994 11 C -0.073 4.073 12 C -0.184 4.184 13 C -0.184 4.184 14 C -0.001 4.001 15 C -0.551 4.551 16 H 0.077 0.923 17 C -0.145 4.145 18 N -0.534 5.534 19 Si 0.717 3.283 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.203 1.203 23 H 0.090 0.910 24 H 0.113 0.887 25 H 0.080 0.920 26 H 0.185 0.815 27 H 0.187 0.813 28 H 0.232 0.768 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.046 0.954 32 H 0.086 0.914 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.046 0.954 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.068 22.654 -0.015 23.016 hybrid contribution 0.023 -1.689 -0.025 1.689 sum 4.091 20.965 -0.039 21.361 Atomic orbital electron populations 1.20667 0.88632 1.03733 1.02958 1.19905 0.97633 0.89879 0.98670 1.25285 0.96305 1.02565 1.14055 1.82944 1.05843 0.97025 1.70062 1.25651 0.99729 1.02693 1.06884 1.20318 0.92054 0.94757 1.09377 1.17588 0.86513 0.83540 0.76946 1.90735 1.14044 1.86455 1.50359 1.46089 1.09896 1.06481 1.74134 1.21663 0.96606 0.79124 1.02005 1.20916 0.94109 0.97259 0.95064 1.21766 1.00300 0.99009 0.97370 1.21766 1.00334 0.99001 0.97347 1.19083 0.96030 0.87426 0.97531 1.21141 0.92817 0.90632 1.50501 0.92323 1.25012 0.95256 0.98671 0.95518 1.69954 1.17065 1.15643 1.50700 0.86707 0.82326 0.80724 0.78513 1.20325 1.21382 1.20331 0.91021 0.88733 0.92038 0.81542 0.81317 0.76839 0.91594 0.91604 0.95404 0.91365 0.93278 0.93277 0.91368 0.95404 0.96301 0.96305 0.92957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.15 9.55 36.01 0.34 -0.80 16 2 C -0.05 -0.59 6.01 -104.06 -0.63 -1.21 16 3 C -0.25 -2.30 10.91 28.86 0.31 -1.99 16 4 S 0.17 1.44 23.02 -107.50 -2.47 -1.03 16 5 C -0.21 -2.16 10.38 29.93 0.31 -1.85 16 6 C -0.15 -1.90 5.98 -104.63 -0.63 -2.53 16 7 C 0.57 8.99 7.79 -12.63 -0.10 8.89 16 8 O -0.54 -10.08 14.20 5.24 0.07 -10.01 16 9 N -0.71 -10.68 4.93 -61.46 -0.30 -10.98 16 10 C 0.13 2.28 4.56 -4.05 -0.02 2.26 16 11 C -0.07 -1.38 0.54 -154.51 -0.08 -1.46 16 12 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 13 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 14 C 0.04 0.90 4.04 -27.88 -0.11 0.78 16 15 C -0.51 -13.53 7.65 -34.44 -0.26 -13.80 16 16 H 0.06 1.48 5.68 -52.49 -0.30 1.18 16 17 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 18 N -0.89 -26.35 13.29 55.43 0.74 -25.61 16 19 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.09 1.30 6.01 -51.93 -0.31 0.99 16 25 H 0.06 0.55 8.13 -51.93 -0.42 0.12 16 26 H 0.17 1.14 8.06 -52.48 -0.42 0.71 16 27 H 0.17 1.40 7.01 -52.48 -0.37 1.03 16 28 H 0.40 5.01 4.66 -40.82 -0.19 4.82 16 29 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.03 0.39 6.86 -51.92 -0.36 0.03 16 32 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 36 H 0.03 0.39 6.86 -51.93 -0.36 0.03 16 37 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 327.08 15.07 4.93 4.93 Total: -1.00 -30.53 327.08 -7.92 -38.45 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -5.51 Total: 2.23 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: -0.36 Total: -14.06 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: 0.43 Total: -36.59 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.07 Total: -10.01 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -2.47 Total: -1.03 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.53 -7.92 -38.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359769482.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.796 kcal (2) G-P(sol) polarization free energy of solvation -30.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds