Wall clock time and date at job start Tue Mar 31 2020 05:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32774 * 123.45879 * 2 1 4 4 S 1.75500 * 110.57366 * 179.73404 * 3 2 1 5 5 C 1.70444 * 92.44757 * 359.97438 * 4 3 2 6 6 C 1.36013 * 110.81665 * 359.97438 * 5 4 3 7 7 C 1.47183 * 123.45867 * 180.02562 * 6 5 4 8 8 O 1.21639 * 119.99781 * 179.97438 * 7 6 5 9 9 N 1.34780 * 120.00403 * 359.97438 * 7 6 5 10 10 C 1.46502 * 120.00145 * 180.02562 * 9 7 6 11 11 C 1.52991 * 109.46909 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47825 * 299.99776 * 11 10 9 13 13 C 1.53003 * 109.47312 * 60.00066 * 11 10 9 14 14 C 1.53004 * 109.47132 * 179.97438 * 11 10 9 15 15 C 1.50697 * 109.47256 * 179.97438 * 14 11 10 16 16 H 1.07995 * 120.00122 * 0.02562 * 15 14 11 17 17 C 1.37882 * 120.00065 * 180.02562 * 15 14 11 18 18 N 1.31517 * 119.99721 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00085 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47005 * 60.00387 * 19 17 15 21 21 H 1.48501 * 109.47316 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47587 * 300.00710 * 19 17 15 23 23 H 1.09001 * 109.47079 * 90.02022 * 1 2 3 24 24 H 1.08993 * 109.47197 * 210.02593 * 1 2 3 25 25 H 1.09000 * 109.47152 * 330.02519 * 1 2 3 26 26 H 1.08004 * 124.70891 * 359.75337 * 3 2 1 27 27 H 1.08003 * 124.59179 * 179.97438 * 5 4 3 28 28 H 0.96998 * 119.99383 * 359.97438 * 9 7 6 29 29 H 1.09001 * 109.47092 * 300.00032 * 10 9 7 30 30 H 1.09004 * 109.46950 * 59.99916 * 10 9 7 31 31 H 1.09007 * 109.46719 * 59.99915 * 12 11 10 32 32 H 1.08998 * 109.47847 * 180.02562 * 12 11 10 33 33 H 1.09004 * 109.47108 * 300.00574 * 12 11 10 34 34 H 1.09001 * 109.46934 * 59.99651 * 13 11 10 35 35 H 1.08998 * 109.47616 * 179.97438 * 13 11 10 36 36 H 1.08997 * 109.46881 * 299.99977 * 13 11 10 37 37 H 1.09001 * 109.47374 * 300.00508 * 14 11 10 38 38 H 1.09004 * 109.46445 * 60.00256 * 14 11 10 39 39 H 0.96995 * 119.99682 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2390 1.1077 0.0000 4 16 3.9498 0.7164 0.0076 5 6 3.6410 -0.9599 0.0115 6 6 2.3032 -1.2049 0.0077 7 6 1.7262 -2.5589 0.0103 8 8 0.5187 -2.7054 0.0071 9 7 2.5357 -3.6365 0.0162 10 6 1.9614 -4.9842 0.0182 11 6 3.0884 -6.0188 0.0243 12 6 3.9556 -5.8360 -1.2228 13 6 3.9482 -5.8290 1.2756 14 6 2.4886 -7.4264 0.0270 15 6 3.5987 -8.4455 0.0325 16 1 4.6290 -8.1217 0.0342 17 6 3.2990 -9.7914 0.0351 18 7 2.0444 -10.1857 0.0325 19 14 4.6751 -11.0546 0.0411 20 1 5.5105 -10.8707 1.2550 21 1 4.0929 -12.4207 0.0427 22 1 5.5158 -10.8766 -1.1699 23 1 -0.3633 -0.0004 -1.0277 24 1 -0.3633 -0.8897 0.5142 25 1 -0.3633 0.8902 0.5134 26 1 1.8374 2.1103 -0.0038 27 1 4.4043 -1.7239 0.0163 28 1 3.4986 -3.5196 0.0183 29 1 1.3432 -5.1144 0.9065 30 1 1.3492 -5.1196 -0.8735 31 1 4.3829 -4.8332 -1.2243 32 1 4.7583 -6.5734 -1.2187 33 1 3.3431 -5.9712 -2.1143 34 1 3.3304 -5.9594 2.1641 35 1 4.7509 -6.5664 1.2803 36 1 4.3755 -4.8263 1.2741 37 1 1.8710 -7.5565 0.9157 38 1 1.8759 -7.5619 -0.8643 39 1 1.8336 -11.1324 0.0340 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359769482.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:18 Heat of formation + Delta-G solvation = -47.981913 kcal Electronic energy + Delta-G solvation = -19667.741088 eV Core-core repulsion = 16700.338914 eV Total energy + Delta-G solvation = -2967.402174 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.13970 -38.99089 -37.86640 -35.33642 -34.06588 -31.96922 -29.19405 -28.71407 -27.98278 -27.52480 -25.51024 -24.43924 -21.80329 -20.50544 -19.33508 -18.61306 -18.34157 -17.93092 -16.65555 -16.47061 -16.31845 -15.49921 -15.30703 -14.75107 -14.55205 -14.50929 -14.23273 -14.05880 -13.94149 -13.73405 -13.52943 -13.01146 -12.84138 -12.78803 -12.75299 -12.59549 -12.34136 -12.23357 -12.01391 -11.82063 -11.55205 -11.13906 -10.90771 -10.74633 -10.50620 -10.15328 -9.83016 -9.21454 -8.13817 -6.21947 -0.20433 0.65729 0.97732 0.99059 1.42859 1.44975 1.52198 2.20728 2.33390 2.45403 3.20571 3.74448 3.90057 4.04535 4.06458 4.20035 4.23111 4.40705 4.65860 4.67566 4.70041 4.72866 4.78873 4.83205 4.93823 5.00316 5.09388 5.10486 5.29438 5.35966 5.45279 5.49058 5.51666 5.56148 5.60496 5.79121 5.89459 6.29875 6.55877 6.93048 7.22613 7.45884 8.98633 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.035297 B = 0.003390 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.086531 B = 8257.332958 C = 8848.754672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.080 4.080 3 C -0.244 4.244 4 S 0.250 5.750 5 C -0.209 4.209 6 C -0.182 4.182 7 C 0.566 3.434 8 O -0.578 6.578 9 N -0.704 5.704 10 C 0.142 3.858 11 C -0.065 4.065 12 C -0.122 4.122 13 C -0.122 4.122 14 C 0.041 3.959 15 C -0.515 4.515 16 H 0.074 0.926 17 C -0.005 4.005 18 N -0.939 5.939 19 Si 0.959 3.041 20 H -0.266 1.266 21 H -0.292 1.292 22 H -0.266 1.266 23 H 0.067 0.933 24 H 0.062 0.938 25 H 0.084 0.916 26 H 0.193 0.807 27 H 0.190 0.810 28 H 0.410 0.590 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.036 0.964 34 H 0.036 0.964 35 H 0.058 0.942 36 H 0.068 0.932 37 H -0.014 1.014 38 H -0.014 1.014 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.086 24.652 -0.011 25.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.090 4.090 3 C -0.379 4.379 4 S 0.517 5.483 5 C -0.348 4.348 6 C -0.200 4.200 7 C 0.353 3.647 8 O -0.460 6.460 9 N -0.356 5.356 10 C 0.018 3.982 11 C -0.065 4.065 12 C -0.179 4.179 13 C -0.179 4.179 14 C 0.003 3.997 15 C -0.553 4.553 16 H 0.092 0.908 17 C -0.202 4.202 18 N -0.580 5.580 19 Si 0.784 3.216 20 H -0.191 1.191 21 H -0.218 1.218 22 H -0.191 1.191 23 H 0.085 0.915 24 H 0.081 0.919 25 H 0.103 0.897 26 H 0.210 0.790 27 H 0.207 0.793 28 H 0.248 0.752 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.004 0.996 38 H 0.004 0.996 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.497 25.270 -0.010 26.358 hybrid contribution -1.006 -2.357 -0.025 2.563 sum 6.492 22.912 -0.035 23.814 Atomic orbital electron populations 1.20575 0.89276 1.03251 1.02565 1.19973 0.97720 0.90474 1.00876 1.25645 0.97338 1.03003 1.11872 1.82776 1.03866 0.94315 1.67306 1.26016 0.99014 1.05140 1.04632 1.20110 0.93421 0.93175 1.13305 1.18121 0.86056 0.84764 0.75720 1.90719 1.15932 1.87191 1.52172 1.45829 1.10529 1.05048 1.74222 1.21240 0.95901 0.80712 1.00304 1.20714 0.94623 0.94004 0.97170 1.21701 0.99367 1.01152 0.95700 1.21701 0.99407 1.01141 0.95674 1.18961 0.95180 0.91204 0.94355 1.21566 0.93790 0.91027 1.48926 0.90834 1.25960 0.97592 1.01225 0.95424 1.70119 1.19503 1.15908 1.52488 0.85588 0.79233 0.77557 0.79198 1.19083 1.21756 1.19099 0.91461 0.91920 0.89726 0.79000 0.79281 0.75165 0.93462 0.93482 0.91292 0.92327 0.94440 0.94434 0.92330 0.91292 0.99591 0.99604 0.93162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.24 9.55 71.24 0.68 -1.56 16 2 C -0.08 -1.78 6.01 -19.47 -0.12 -1.90 16 3 C -0.24 -3.73 10.91 66.64 0.73 -3.01 16 4 S 0.25 3.03 23.02 -56.49 -1.30 1.73 16 5 C -0.21 -3.56 10.38 67.30 0.70 -2.86 16 6 C -0.18 -4.45 5.98 -19.87 -0.12 -4.57 16 7 C 0.57 17.98 7.79 86.59 0.67 18.65 16 8 O -0.58 -22.87 14.20 -4.15 -0.06 -22.93 16 9 N -0.70 -20.50 4.93 -466.60 -2.30 -22.80 16 10 C 0.14 5.22 4.56 86.38 0.39 5.61 16 11 C -0.06 -2.45 0.54 -52.18 -0.03 -2.48 16 12 C -0.12 -4.08 8.05 71.98 0.58 -3.50 16 13 C -0.12 -4.08 8.05 71.98 0.58 -3.50 16 14 C 0.04 2.07 4.04 29.85 0.12 2.20 16 15 C -0.52 -27.55 7.65 25.60 0.20 -27.36 16 16 H 0.07 3.65 5.68 -2.91 -0.02 3.63 16 17 C -0.01 -0.29 5.46 84.66 0.46 0.17 16 18 N -0.94 -57.31 13.29 21.45 0.28 -57.03 16 19 Si 0.96 43.44 29.54 68.60 2.03 45.46 16 20 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 21 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 22 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 23 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.06 1.84 6.01 -2.39 -0.01 1.82 16 25 H 0.08 1.43 8.13 -2.39 -0.02 1.41 16 26 H 0.19 1.83 8.06 -2.91 -0.02 1.81 16 27 H 0.19 2.27 7.01 -2.91 -0.02 2.25 16 28 H 0.41 9.23 4.66 -92.71 -0.43 8.80 16 29 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 31 H 0.07 1.73 6.86 -2.38 -0.02 1.71 16 32 H 0.06 2.08 6.62 -2.39 -0.02 2.06 16 33 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 34 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.06 2.08 6.62 -2.39 -0.02 2.06 16 36 H 0.07 1.73 6.86 -2.39 -0.02 1.71 16 37 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 38 H -0.01 -0.82 8.14 -2.38 -0.02 -0.84 16 39 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -70.16 327.08 4.12 -66.03 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: 0.62 Total: 13.63 kcal Atomic # 6 Polarization: -28.95 SS G_CDS: 4.85 Total: -24.10 kcal Atomic # 7 Polarization: -77.82 SS G_CDS: -2.01 Total: -79.83 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: -0.06 Total: -22.93 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: 3.03 SS G_CDS: -1.30 Total: 1.73 kcal Total: -70.16 4.12 -66.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359769482.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.051 kcal (2) G-P(sol) polarization free energy of solvation -70.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds