Wall clock time and date at job start Tue Mar 31 2020 05:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 119.99996 * 2 1 4 4 H 1.48502 * 109.47086 * 270.00557 * 3 2 1 5 5 H 1.48499 * 109.46539 * 30.00525 * 3 2 1 6 6 H 1.48491 * 109.46797 * 150.00147 * 3 2 1 7 7 C 1.37878 * 120.00112 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00099 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99964 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47113 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47113 * 179.97438 * 10 9 7 12 12 O 1.21287 * 119.99963 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99870 * 180.02562 * 11 10 9 14 14 C 1.39922 * 120.00069 * 185.27249 * 13 11 10 15 15 C 1.38922 * 120.04469 * 213.30134 * 14 13 11 16 16 C 1.38128 * 120.04340 * 180.02562 * 15 14 13 17 17 C 1.38213 * 120.12016 * 359.68219 * 16 15 14 18 18 C 1.38775 * 120.08458 * 0.58996 * 17 16 15 19 19 O 1.35901 * 120.01899 * 179.70338 * 18 17 16 20 20 C 1.42897 * 116.99826 * 359.72696 * 19 18 17 21 21 C 1.53004 * 109.46801 * 180.02562 * 20 19 18 22 22 F 1.39901 * 109.46976 * 65.00103 * 21 20 19 23 23 C 1.38625 * 119.95553 * 359.43405 * 18 17 16 24 24 H 0.97005 * 120.00303 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.47155 * 59.99429 * 9 7 2 26 26 H 1.08992 * 109.47272 * 299.99668 * 9 7 2 27 27 H 1.09006 * 109.46996 * 60.00042 * 10 9 7 28 28 H 1.09002 * 109.47338 * 300.00335 * 10 9 7 29 29 H 0.96996 * 120.00002 * 5.27605 * 13 11 10 30 30 H 1.08001 * 119.98181 * 0.02562 * 15 14 13 31 31 H 1.07998 * 119.93919 * 179.97438 * 16 15 14 32 32 H 1.07997 * 119.95884 * 180.29907 * 17 16 15 33 33 H 1.08997 * 109.47701 * 300.00128 * 20 19 18 34 34 H 1.09002 * 109.47039 * 60.00639 * 20 19 18 35 35 H 1.08998 * 109.47303 * 185.00269 * 21 20 19 36 36 H 1.09003 * 109.47105 * 305.00525 * 21 20 19 37 37 H 1.08003 * 120.05961 * 180.25200 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7002 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5285 -2.6364 -0.0022 12 8 6.1349 -1.5860 -0.0036 13 7 6.2024 -3.8037 -0.0028 14 6 7.5973 -3.8062 0.1074 15 6 8.3445 -4.7812 -0.5416 16 6 9.7214 -4.7840 -0.4323 17 6 10.3597 -3.8138 0.3170 18 6 9.6181 -2.8408 0.9721 19 8 10.2467 -1.8910 1.7134 20 6 11.6726 -1.9581 1.7794 21 6 12.1969 -0.8164 2.6527 22 9 11.7566 -0.9958 3.9685 23 6 8.2360 -2.8350 0.8651 24 1 -0.4851 0.8401 0.0004 25 1 3.8752 -0.6803 0.8888 26 1 3.8745 -0.6801 -0.8911 27 1 3.6578 -3.1505 -0.8908 28 1 3.6585 -3.1502 0.8892 29 1 5.7205 -4.6419 -0.0798 30 1 7.8485 -5.5374 -1.1319 31 1 10.3006 -5.5429 -0.9372 32 1 11.4367 -3.8156 0.3967 33 1 11.9719 -2.9127 2.2119 34 1 12.0874 -1.8679 0.7754 35 1 13.2867 -0.8136 2.6314 36 1 11.8236 0.1339 2.2711 37 1 7.6574 -2.0762 1.3709 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360318386.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:59 Heat of formation + Delta-G solvation = -106.631148 kcal Electronic energy + Delta-G solvation = -20912.142368 eV Core-core repulsion = 17375.983796 eV Total energy + Delta-G solvation = -3536.158572 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -47.91041 -40.62708 -39.48973 -37.47220 -34.42622 -33.55481 -31.73525 -31.42792 -29.79822 -29.27925 -26.21022 -24.06878 -23.05754 -22.12396 -20.90166 -19.76988 -18.75108 -17.36176 -16.97573 -16.61437 -16.31795 -16.17846 -15.87326 -15.47944 -15.29977 -15.12363 -14.50015 -14.11647 -13.81601 -13.38007 -13.30115 -13.00967 -12.58862 -12.52919 -12.02664 -11.77874 -11.56651 -11.44767 -11.40978 -11.05370 -10.98600 -10.24790 -10.19513 -10.09222 -9.80394 -9.35843 -9.21290 -8.52707 -8.44837 -8.10610 -6.04652 -4.03926 1.19027 1.35061 2.75323 2.93032 3.29845 3.37468 3.44275 3.55010 3.74076 4.12121 4.33681 4.49717 4.53414 4.65865 4.70854 4.85185 4.97745 5.08817 5.20589 5.25808 5.30796 5.38059 5.45991 5.81669 5.97582 6.00759 6.13100 6.18032 6.32850 6.34830 6.61770 6.82899 7.26170 7.31741 7.38540 7.54188 7.75661 8.39431 8.51109 8.97743 9.58103 11.08054 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.018055 B = 0.003608 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.415491 B = 7758.535917 C = 9036.193371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.070 3.930 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.526 4.526 8 H 0.073 0.927 9 C 0.001 3.999 10 C -0.121 4.121 11 C 0.508 3.492 12 O -0.514 6.514 13 N -0.684 5.684 14 C 0.198 3.802 15 C -0.188 4.188 16 C -0.062 4.062 17 C -0.233 4.233 18 C 0.147 3.853 19 O -0.308 6.308 20 C 0.025 3.975 21 C 0.066 3.934 22 F -0.210 7.210 23 C -0.156 4.156 24 H 0.264 0.736 25 H 0.025 0.975 26 H 0.020 0.980 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.413 0.587 30 H 0.127 0.873 31 H 0.127 0.873 32 H 0.125 0.875 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.518 -10.140 1.060 27.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.132 4.132 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.185 1.185 7 C -0.564 4.564 8 H 0.091 0.909 9 C -0.037 4.037 10 C -0.160 4.160 11 C 0.298 3.702 12 O -0.387 6.387 13 N -0.330 5.330 14 C 0.102 3.898 15 C -0.208 4.208 16 C -0.080 4.080 17 C -0.253 4.253 18 C 0.102 3.898 19 O -0.221 6.221 20 C -0.051 4.051 21 C 0.012 3.988 22 F -0.191 7.191 23 C -0.177 4.177 24 H 0.073 0.927 25 H 0.043 0.957 26 H 0.038 0.962 27 H 0.108 0.892 28 H 0.110 0.890 29 H 0.249 0.751 30 H 0.145 0.855 31 H 0.145 0.855 32 H 0.143 0.857 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.114 0.886 36 H 0.106 0.894 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 25.605 -9.050 1.217 27.185 hybrid contribution 0.296 0.260 -0.184 0.435 sum 25.901 -8.790 1.033 27.371 Atomic orbital electron populations 1.69907 1.06299 1.27028 1.50897 1.24966 0.94711 0.99240 0.94261 0.86802 0.80643 0.83399 0.78767 1.20218 1.21383 1.18513 1.21081 0.89135 0.94621 1.51573 0.90861 1.19394 0.96591 0.89927 0.97826 1.21719 0.86801 1.03740 1.03787 1.21866 0.91943 0.82441 0.73920 1.90693 1.70485 1.31183 1.46358 1.43934 1.04380 1.10734 1.73920 1.17470 0.83593 0.95078 0.93631 1.20819 0.94048 1.02078 1.03896 1.20646 0.93697 0.97094 0.96611 1.21113 0.99759 0.98959 1.05471 1.18699 0.91662 0.88220 0.91239 1.86130 1.20050 1.49209 1.66721 1.23457 0.80392 1.00229 1.00993 1.22058 0.99690 0.99477 0.77608 1.92815 1.91609 1.96725 1.38000 1.20369 0.91650 1.02675 1.03050 0.92666 0.95684 0.96151 0.89194 0.89017 0.75124 0.85516 0.85527 0.85749 0.90789 0.90170 0.88588 0.89444 0.83741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.93 13.96 55.43 0.77 -27.15 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.88 22.59 27.47 -169.99 -4.67 17.92 16 4 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.26 -6.70 6.54 56.52 0.37 -6.33 16 7 C -0.53 -14.93 9.66 -34.44 -0.33 -15.27 16 8 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 9 C 0.00 0.01 3.33 -27.88 -0.09 -0.08 16 10 C -0.12 -2.26 5.64 -27.88 -0.16 -2.42 16 11 C 0.51 9.14 7.57 -10.99 -0.08 9.05 16 12 O -0.51 -11.25 13.67 5.55 0.08 -11.18 16 13 N -0.68 -9.38 5.34 -9.88 -0.05 -9.44 16 14 C 0.20 2.79 6.28 -83.72 -0.53 2.26 16 15 C -0.19 -2.08 9.96 -39.37 -0.39 -2.48 16 16 C -0.06 -0.61 10.03 -39.63 -0.40 -1.01 16 17 C -0.23 -2.50 9.04 -39.39 -0.36 -2.85 16 18 C 0.15 2.02 6.68 -39.24 -0.26 1.76 16 19 O -0.31 -4.08 10.13 -19.43 -0.20 -4.28 16 20 C 0.03 0.21 5.20 37.16 0.19 0.40 16 21 C 0.07 0.47 7.93 37.16 0.29 0.77 16 22 F -0.21 -2.36 17.35 2.25 0.04 -2.32 16 23 C -0.16 -2.49 8.59 -39.25 -0.34 -2.82 16 24 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 25 H 0.02 0.64 7.16 -51.93 -0.37 0.27 16 26 H 0.02 0.52 7.53 -51.93 -0.39 0.12 16 27 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 28 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 29 H 0.41 4.10 8.82 -40.82 -0.36 3.74 16 30 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 31 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 32 H 0.12 0.97 6.29 -52.49 -0.33 0.64 16 33 H 0.07 0.52 7.67 -51.93 -0.40 0.12 16 34 H 0.08 0.48 7.65 -51.93 -0.40 0.08 16 35 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.14 2.68 6.41 -52.48 -0.34 2.34 16 LS Contribution 320.55 15.07 4.83 4.83 Total: -1.00 -35.87 320.55 -6.45 -42.33 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -4.71 Total: 0.00 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: -2.55 Total: -10.72 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: 0.72 Total: -36.59 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: -0.12 Total: -15.46 kcal Atomic # 9 Polarization: -2.36 SS G_CDS: 0.04 Total: -2.32 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -4.67 Total: 17.92 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -35.87 -6.45 -42.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360318386.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.304 kcal (2) G-P(sol) polarization free energy of solvation -35.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds