Wall clock time and date at job start Tue Mar 31 2020 05:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 119.99996 * 2 1 4 4 H 1.48502 * 109.47086 * 270.00557 * 3 2 1 5 5 H 1.48499 * 109.46539 * 30.00525 * 3 2 1 6 6 H 1.48491 * 109.46797 * 150.00147 * 3 2 1 7 7 C 1.37878 * 120.00112 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00099 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99964 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47113 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47113 * 179.97438 * 10 9 7 12 12 O 1.21287 * 119.99963 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99870 * 180.02562 * 11 10 9 14 14 C 1.39922 * 120.00069 * 185.27249 * 13 11 10 15 15 C 1.38922 * 120.04469 * 213.30134 * 14 13 11 16 16 C 1.38128 * 120.04340 * 180.02562 * 15 14 13 17 17 C 1.38213 * 120.12016 * 359.68219 * 16 15 14 18 18 C 1.38775 * 120.08458 * 0.58996 * 17 16 15 19 19 O 1.35901 * 120.01899 * 179.70338 * 18 17 16 20 20 C 1.42897 * 116.99826 * 359.72696 * 19 18 17 21 21 C 1.53004 * 109.46801 * 180.02562 * 20 19 18 22 22 F 1.39901 * 109.46976 * 65.00103 * 21 20 19 23 23 C 1.38625 * 119.95553 * 359.43405 * 18 17 16 24 24 H 0.97005 * 120.00303 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.47155 * 59.99429 * 9 7 2 26 26 H 1.08992 * 109.47272 * 299.99668 * 9 7 2 27 27 H 1.09006 * 109.46996 * 60.00042 * 10 9 7 28 28 H 1.09002 * 109.47338 * 300.00335 * 10 9 7 29 29 H 0.96996 * 120.00002 * 5.27605 * 13 11 10 30 30 H 1.08001 * 119.98181 * 0.02562 * 15 14 13 31 31 H 1.07998 * 119.93919 * 179.97438 * 16 15 14 32 32 H 1.07997 * 119.95884 * 180.29907 * 17 16 15 33 33 H 1.08997 * 109.47701 * 300.00128 * 20 19 18 34 34 H 1.09002 * 109.47039 * 60.00639 * 20 19 18 35 35 H 1.08998 * 109.47303 * 185.00269 * 21 20 19 36 36 H 1.09003 * 109.47105 * 305.00525 * 21 20 19 37 37 H 1.08003 * 120.05961 * 180.25200 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7002 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5285 -2.6364 -0.0022 12 8 6.1349 -1.5860 -0.0036 13 7 6.2024 -3.8037 -0.0028 14 6 7.5973 -3.8062 0.1074 15 6 8.3445 -4.7812 -0.5416 16 6 9.7214 -4.7840 -0.4323 17 6 10.3597 -3.8138 0.3170 18 6 9.6181 -2.8408 0.9721 19 8 10.2467 -1.8910 1.7134 20 6 11.6726 -1.9581 1.7794 21 6 12.1969 -0.8164 2.6527 22 9 11.7566 -0.9958 3.9685 23 6 8.2360 -2.8350 0.8651 24 1 -0.4851 0.8401 0.0004 25 1 3.8752 -0.6803 0.8888 26 1 3.8745 -0.6801 -0.8911 27 1 3.6578 -3.1505 -0.8908 28 1 3.6585 -3.1502 0.8892 29 1 5.7205 -4.6419 -0.0798 30 1 7.8485 -5.5374 -1.1319 31 1 10.3006 -5.5429 -0.9372 32 1 11.4367 -3.8156 0.3967 33 1 11.9719 -2.9127 2.2119 34 1 12.0874 -1.8679 0.7754 35 1 13.2867 -0.8136 2.6314 36 1 11.8236 0.1339 2.2711 37 1 7.6574 -2.0762 1.3709 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360318386.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:59 Heat of formation + Delta-G solvation = -131.573481 kcal Electronic energy + Delta-G solvation = -20913.223948 eV Core-core repulsion = 17375.983796 eV Total energy + Delta-G solvation = -3537.240153 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.63574 -41.71445 -40.59827 -38.49644 -35.67219 -35.51722 -33.40358 -32.43329 -30.81448 -30.22971 -28.00163 -24.93742 -24.09661 -23.38254 -22.20368 -21.19567 -19.71080 -19.22588 -17.88891 -17.64325 -17.33867 -17.25189 -16.90217 -16.56503 -16.30280 -16.20618 -15.96407 -15.48105 -15.10043 -14.74703 -14.60469 -14.34265 -14.14196 -13.66679 -13.45069 -12.94766 -12.81145 -12.55750 -12.30712 -12.16552 -12.11339 -12.00451 -11.81481 -11.75546 -11.42368 -11.27301 -10.81544 -10.79604 -9.46239 -9.05500 -8.33358 -6.36072 0.21832 0.44116 1.30971 1.33415 1.48260 1.57905 1.90998 2.25387 2.32992 2.80464 3.02434 3.52668 3.80488 3.84730 3.91773 4.00490 4.12175 4.20759 4.27228 4.29487 4.34065 4.44785 4.50065 4.56820 4.73913 4.83615 4.96587 5.26306 5.27700 5.33801 5.35083 5.40708 5.46997 5.58536 5.85071 6.21080 6.40351 6.43084 6.70367 7.13970 7.29392 8.82233 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.018055 B = 0.003608 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.415491 B = 7758.535917 C = 9036.193371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.015 3.985 3 Si 0.936 3.064 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.528 4.528 8 H 0.054 0.946 9 C 0.003 3.997 10 C -0.113 4.113 11 C 0.513 3.487 12 O -0.561 6.561 13 N -0.663 5.663 14 C 0.174 3.826 15 C -0.180 4.180 16 C -0.053 4.053 17 C -0.223 4.223 18 C 0.132 3.868 19 O -0.341 6.341 20 C 0.016 3.984 21 C 0.058 3.942 22 F -0.237 7.237 23 C -0.195 4.195 24 H 0.268 0.732 25 H 0.008 0.992 26 H 0.010 0.990 27 H 0.113 0.887 28 H 0.109 0.891 29 H 0.432 0.568 30 H 0.158 0.842 31 H 0.170 0.830 32 H 0.159 0.841 33 H 0.087 0.913 34 H 0.107 0.893 35 H 0.141 0.859 36 H 0.085 0.915 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.550 -11.996 -0.084 30.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.183 4.183 3 Si 0.760 3.240 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.566 4.566 8 H 0.072 0.928 9 C -0.035 4.035 10 C -0.153 4.153 11 C 0.303 3.697 12 O -0.439 6.439 13 N -0.310 5.310 14 C 0.079 3.921 15 C -0.200 4.200 16 C -0.071 4.071 17 C -0.243 4.243 18 C 0.086 3.914 19 O -0.256 6.256 20 C -0.059 4.059 21 C 0.004 3.996 22 F -0.219 7.219 23 C -0.216 4.216 24 H 0.077 0.923 25 H 0.026 0.974 26 H 0.028 0.972 27 H 0.131 0.869 28 H 0.127 0.873 29 H 0.271 0.729 30 H 0.175 0.825 31 H 0.188 0.812 32 H 0.176 0.824 33 H 0.105 0.895 34 H 0.125 0.875 35 H 0.158 0.842 36 H 0.103 0.897 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 28.653 -10.964 0.073 30.679 hybrid contribution -0.548 0.745 0.182 0.942 sum 28.106 -10.219 0.254 29.907 Atomic orbital electron populations 1.70011 1.07695 1.28103 1.52455 1.25766 0.95467 1.02712 0.94314 0.85871 0.79144 0.79786 0.79166 1.19247 1.20292 1.18970 1.21406 0.91057 0.93838 1.50307 0.92784 1.19241 0.94148 0.93672 0.96401 1.21529 0.87726 1.00230 1.05772 1.21558 0.91523 0.82985 0.73655 1.90685 1.71140 1.33127 1.48924 1.43546 1.04770 1.10177 1.72492 1.17686 0.83346 0.96140 0.94922 1.21184 0.94711 1.01260 1.02877 1.21201 0.93421 0.97153 0.95354 1.21525 1.01363 0.97535 1.03833 1.18862 0.91181 0.89310 0.92006 1.86096 1.22915 1.49657 1.66916 1.23835 0.77941 1.01304 1.02835 1.22434 1.02169 0.99142 0.75847 1.92758 1.92144 1.96827 1.40133 1.20298 0.93019 1.03159 1.05115 0.92331 0.97390 0.97183 0.86931 0.87335 0.72860 0.82480 0.81249 0.82353 0.89452 0.87467 0.84180 0.89674 0.88007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.22 13.96 21.45 0.30 -58.92 16 2 C 0.02 0.92 5.47 84.66 0.46 1.38 16 3 Si 0.94 47.42 27.47 68.60 1.88 49.30 16 4 H -0.27 -13.07 7.11 99.48 0.71 -12.37 16 5 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 6 H -0.27 -13.53 6.54 99.48 0.65 -12.88 16 7 C -0.53 -30.49 9.66 25.60 0.25 -30.25 16 8 H 0.05 3.25 7.99 -2.91 -0.02 3.23 16 9 C 0.00 0.17 3.33 29.85 0.10 0.27 16 10 C -0.11 -4.21 5.64 29.85 0.17 -4.04 16 11 C 0.51 18.63 7.57 87.66 0.66 19.30 16 12 O -0.56 -25.66 13.67 -3.05 -0.04 -25.70 16 13 N -0.66 -17.66 5.34 -303.55 -1.62 -19.28 16 14 C 0.17 4.75 6.28 38.14 0.24 4.99 16 15 C -0.18 -3.39 9.96 22.41 0.22 -3.16 16 16 C -0.05 -0.81 10.03 22.24 0.22 -0.59 16 17 C -0.22 -4.04 9.04 22.39 0.20 -3.84 16 18 C 0.13 3.57 6.68 22.49 0.15 3.72 16 19 O -0.34 -9.14 10.13 -92.43 -0.94 -10.08 16 20 C 0.02 0.22 5.20 71.98 0.37 0.60 16 21 C 0.06 0.75 7.93 71.98 0.57 1.32 16 22 F -0.24 -5.29 17.35 44.97 0.78 -4.51 16 23 C -0.19 -6.42 8.59 22.49 0.19 -6.23 16 24 H 0.27 15.74 8.31 -92.70 -0.77 14.96 16 25 H 0.01 0.41 7.16 -2.38 -0.02 0.39 16 26 H 0.01 0.51 7.53 -2.39 -0.02 0.49 16 27 H 0.11 3.67 8.14 -2.38 -0.02 3.65 16 28 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 29 H 0.43 7.70 8.82 -92.71 -0.82 6.88 16 30 H 0.16 1.96 8.06 -2.91 -0.02 1.93 16 31 H 0.17 1.19 8.06 -2.91 -0.02 1.17 16 32 H 0.16 1.70 6.29 -2.91 -0.02 1.68 16 33 H 0.09 1.00 7.67 -2.39 -0.02 0.98 16 34 H 0.11 0.93 7.65 -2.39 -0.02 0.91 16 35 H 0.14 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.10 4.16 6.41 -2.91 -0.02 4.14 16 Total: -1.00 -82.49 320.55 4.40 -78.08 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: 0.22 Total: 7.64 kcal Atomic # 6 Polarization: -20.35 SS G_CDS: 3.82 Total: -16.53 kcal Atomic # 7 Polarization: -76.88 SS G_CDS: -1.32 Total: -78.21 kcal Atomic # 8 Polarization: -34.80 SS G_CDS: -0.98 Total: -35.78 kcal Atomic # 9 Polarization: -5.29 SS G_CDS: 0.78 Total: -4.51 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 1.88 Total: 49.30 kcal Total: -82.49 4.40 -78.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360318386.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.490 kcal (2) G-P(sol) polarization free energy of solvation -82.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds