Wall clock time and date at job start Tue Mar 31 2020 05:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00126 * 2 1 4 4 H 1.48507 * 109.46784 * 269.99682 * 3 2 1 5 5 H 1.48499 * 109.47029 * 29.99461 * 3 2 1 6 6 H 1.48496 * 109.47387 * 149.99646 * 3 2 1 7 7 C 1.37875 * 120.00000 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99837 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00122 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.47208 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.46917 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00201 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99614 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99793 * 179.97438 * 13 11 10 15 15 H 1.09002 * 109.47092 * 34.99824 * 14 13 11 16 16 C 1.53000 * 109.47023 * 274.99565 * 14 13 11 17 17 O 1.42899 * 109.47494 * 295.00220 * 16 14 13 18 18 C 1.50703 * 109.47155 * 154.99862 * 14 13 11 19 19 C 1.38270 * 119.98552 * 39.72607 * 18 14 13 20 20 C 1.38226 * 120.04652 * 179.72679 * 19 18 14 21 21 C 1.38214 * 120.02840 * 0.54511 * 20 19 18 22 22 C 1.38438 * 119.97358 * 359.73073 * 21 20 19 23 23 F 1.35094 * 120.02514 * 180.02562 * 22 21 20 24 24 C 1.38179 * 119.98813 * 219.99946 * 18 14 13 25 25 H 0.97004 * 120.00183 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47098 * 60.00159 * 9 7 2 27 27 H 1.09002 * 109.47015 * 300.00607 * 9 7 2 28 28 H 1.09002 * 109.47125 * 59.99974 * 10 9 7 29 29 H 1.09002 * 109.47133 * 299.99699 * 10 9 7 30 30 H 0.97004 * 119.99983 * 359.97438 * 13 11 10 31 31 H 1.09001 * 109.46952 * 55.00212 * 16 14 13 32 32 H 1.09008 * 109.47142 * 174.99638 * 16 14 13 33 33 H 0.96693 * 114.00295 * 179.97438 * 17 16 14 34 34 H 1.08000 * 119.97451 * 359.97438 * 19 18 14 35 35 H 1.07998 * 119.98171 * 180.27468 * 20 19 18 36 36 H 1.07999 * 120.01243 * 179.70619 * 21 20 19 37 37 H 1.07994 * 120.01027 * 0.02562 * 24 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5285 -2.6365 0.0022 12 8 6.1349 -1.5862 0.0026 13 7 6.2024 -3.8038 0.0018 14 6 7.6674 -3.8038 0.0024 15 1 8.0304 -2.9623 0.5925 16 6 8.1779 -3.6773 -1.4343 17 8 7.8002 -4.8376 -2.1780 18 6 8.1695 -5.0918 0.6024 19 6 7.5315 -6.2839 0.3128 20 6 7.9944 -7.4668 0.8579 21 6 9.0887 -7.4578 1.7021 22 6 9.7248 -6.2641 1.9972 23 9 10.7948 -6.2542 2.8218 24 6 9.2637 -5.0804 1.4461 25 1 -0.4850 0.8401 -0.0004 26 1 3.8745 -0.6801 0.8912 27 1 3.8752 -0.6803 -0.8888 28 1 3.6585 -3.1502 -0.8893 29 1 3.6578 -3.1506 0.8908 30 1 5.7173 -4.6438 0.0011 31 1 7.7435 -2.7914 -1.8976 32 1 9.2643 -3.5879 -1.4273 33 1 8.0911 -4.8257 -3.1001 34 1 6.6734 -6.2913 -0.3429 35 1 7.4980 -8.3979 0.6275 36 1 9.4473 -8.3816 2.1316 37 1 9.7588 -4.1485 1.6759 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360768218.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:54 Heat of formation + Delta-G solvation = -115.714734 kcal Electronic energy + Delta-G solvation = -21288.471629 eV Core-core repulsion = 17751.919164 eV Total energy + Delta-G solvation = -3536.552466 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.12709 -40.22130 -38.83722 -36.99586 -34.66476 -33.48719 -31.93308 -31.17596 -30.55041 -28.58526 -26.02797 -23.95742 -23.08370 -21.80469 -20.57024 -19.76015 -17.98357 -17.63779 -17.08551 -16.43825 -16.41164 -15.96876 -15.85278 -15.69961 -15.25001 -14.41163 -14.21545 -14.07512 -13.97583 -13.49300 -13.24592 -13.02995 -12.56812 -12.53727 -12.22510 -12.09688 -11.77399 -11.42550 -11.20315 -10.96838 -10.25026 -10.17124 -10.05241 -9.79423 -9.38854 -9.23515 -9.17359 -8.97978 -8.88110 -8.51041 -6.03209 -4.01983 0.86565 0.93037 3.04902 3.19926 3.37264 3.43748 3.45410 3.54624 3.94059 4.08414 4.30981 4.50479 4.52192 4.73328 4.92774 4.96470 5.12740 5.17114 5.21745 5.32234 5.42157 5.57514 5.61232 5.80477 5.81515 6.04327 6.07277 6.09304 6.18087 6.56906 6.60569 6.68734 7.35317 7.41390 7.42928 7.71722 7.78998 8.48986 8.60394 8.99960 9.59757 11.09649 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.027802 B = 0.003328 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.881166 B = 8411.224606 C = 8437.512690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.069 3.931 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.525 4.525 8 H 0.073 0.927 9 C 0.002 3.998 10 C -0.122 4.122 11 C 0.513 3.487 12 O -0.542 6.542 13 N -0.729 5.729 14 C 0.187 3.813 15 H 0.109 0.891 16 C 0.069 3.931 17 O -0.565 6.565 18 C -0.055 4.055 19 C -0.099 4.099 20 C -0.091 4.091 21 C -0.155 4.155 22 C 0.095 3.905 23 F -0.141 7.141 24 C -0.146 4.146 25 H 0.263 0.737 26 H 0.023 0.977 27 H 0.019 0.981 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.401 0.599 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.378 0.622 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.133 0.867 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.193 -15.807 -0.656 25.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.185 1.185 7 C -0.563 4.563 8 H 0.091 0.909 9 C -0.036 4.036 10 C -0.162 4.162 11 C 0.302 3.698 12 O -0.419 6.419 13 N -0.383 5.383 14 C 0.081 3.919 15 H 0.127 0.873 16 C -0.011 4.011 17 O -0.371 6.371 18 C -0.056 4.056 19 C -0.117 4.117 20 C -0.109 4.109 21 C -0.174 4.174 22 C 0.076 3.924 23 F -0.120 7.120 24 C -0.165 4.165 25 H 0.073 0.927 26 H 0.042 0.958 27 H 0.037 0.963 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.237 0.763 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.225 0.775 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.151 0.849 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 20.237 -15.063 -0.037 25.228 hybrid contribution 0.662 0.622 -0.410 0.996 sum 20.899 -14.441 -0.447 25.407 Atomic orbital electron populations 1.69912 1.06299 1.26966 1.51072 1.24975 0.94708 0.99230 0.94347 0.86793 0.80620 0.83405 0.78708 1.20270 1.21446 1.18538 1.21116 0.89286 0.94573 1.51315 0.90922 1.19366 0.96414 0.90166 0.97635 1.21674 0.87722 1.03322 1.03455 1.21595 0.91682 0.82639 0.73893 1.90646 1.70767 1.31442 1.49006 1.46215 1.05149 1.09661 1.77296 1.19834 0.82238 0.95333 0.94462 0.87330 1.22577 0.98091 0.88508 0.91876 1.86449 1.81676 1.42080 1.26859 1.19639 0.94952 0.95205 0.95824 1.21045 1.00307 0.91414 0.98927 1.21026 0.95413 0.98672 0.95825 1.21164 0.97915 0.97042 1.01231 1.17607 0.86725 0.94677 0.93371 1.91498 1.53265 1.97373 1.69870 1.20980 0.98573 0.97672 0.99264 0.92717 0.95817 0.96307 0.89498 0.89522 0.76304 0.92151 0.92958 0.77529 0.84816 0.84843 0.84865 0.84635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.98 13.96 55.43 0.77 -27.21 16 2 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 3 Si 0.88 22.50 27.47 -169.99 -4.67 17.83 16 4 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.26 -6.65 6.54 56.52 0.37 -6.28 16 7 C -0.53 -14.97 9.66 -34.44 -0.33 -15.30 16 8 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 9 C 0.00 0.05 3.33 -27.88 -0.09 -0.04 16 10 C -0.12 -2.33 5.64 -27.88 -0.16 -2.49 16 11 C 0.51 9.04 7.79 -10.98 -0.09 8.95 16 12 O -0.54 -11.46 15.64 5.56 0.09 -11.38 16 13 N -0.73 -9.60 4.97 -54.93 -0.27 -9.88 16 14 C 0.19 2.18 2.61 -69.08 -0.18 2.00 16 15 H 0.11 1.38 7.44 -51.93 -0.39 0.99 16 16 C 0.07 0.72 6.84 37.16 0.25 0.97 16 17 O -0.57 -5.29 12.06 -35.23 -0.42 -5.72 16 18 C -0.06 -0.57 4.83 -104.63 -0.50 -1.08 16 19 C -0.10 -0.92 8.06 -39.57 -0.32 -1.24 16 20 C -0.09 -0.74 10.04 -39.59 -0.40 -1.14 16 21 C -0.15 -1.34 10.03 -39.52 -0.40 -1.74 16 22 C 0.10 0.97 7.30 -39.42 -0.29 0.68 16 23 F -0.14 -1.54 17.27 2.25 0.04 -1.51 16 24 C -0.15 -1.48 9.65 -39.51 -0.38 -1.86 16 25 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 26 H 0.02 0.61 7.16 -51.93 -0.37 0.24 16 27 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 28 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 29 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 30 H 0.40 4.45 6.85 -40.82 -0.28 4.17 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 33 H 0.38 2.10 9.12 45.56 0.42 2.51 16 34 H 0.13 1.17 6.67 -52.49 -0.35 0.82 16 35 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 36 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 37 H 0.14 1.22 8.04 -52.49 -0.42 0.79 16 LS Contribution 321.16 15.07 4.84 4.84 Total: -1.00 -34.51 321.16 -6.51 -41.02 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -3.91 Total: 2.33 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: -2.98 Total: -10.33 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 0.50 Total: -37.09 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -0.34 Total: -17.10 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.51 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.67 Total: 17.83 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -34.51 -6.51 -41.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360768218.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.693 kcal (2) G-P(sol) polarization free energy of solvation -34.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds