Wall clock time and date at job start Tue Mar 31 2020 05:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00126 * 2 1 4 4 H 1.48507 * 109.46784 * 269.99682 * 3 2 1 5 5 H 1.48499 * 109.47029 * 29.99461 * 3 2 1 6 6 H 1.48496 * 109.47387 * 149.99646 * 3 2 1 7 7 C 1.37875 * 120.00000 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99837 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00122 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.47208 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.46917 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00201 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99614 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99793 * 179.97438 * 13 11 10 15 15 H 1.09002 * 109.47092 * 34.99824 * 14 13 11 16 16 C 1.53000 * 109.47023 * 274.99565 * 14 13 11 17 17 O 1.42899 * 109.47494 * 295.00220 * 16 14 13 18 18 C 1.50703 * 109.47155 * 154.99862 * 14 13 11 19 19 C 1.38270 * 119.98552 * 39.72607 * 18 14 13 20 20 C 1.38226 * 120.04652 * 179.72679 * 19 18 14 21 21 C 1.38214 * 120.02840 * 0.54511 * 20 19 18 22 22 C 1.38438 * 119.97358 * 359.73073 * 21 20 19 23 23 F 1.35094 * 120.02514 * 180.02562 * 22 21 20 24 24 C 1.38179 * 119.98813 * 219.99946 * 18 14 13 25 25 H 0.97004 * 120.00183 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47098 * 60.00159 * 9 7 2 27 27 H 1.09002 * 109.47015 * 300.00607 * 9 7 2 28 28 H 1.09002 * 109.47125 * 59.99974 * 10 9 7 29 29 H 1.09002 * 109.47133 * 299.99699 * 10 9 7 30 30 H 0.97004 * 119.99983 * 359.97438 * 13 11 10 31 31 H 1.09001 * 109.46952 * 55.00212 * 16 14 13 32 32 H 1.09008 * 109.47142 * 174.99638 * 16 14 13 33 33 H 0.96693 * 114.00295 * 179.97438 * 17 16 14 34 34 H 1.08000 * 119.97451 * 359.97438 * 19 18 14 35 35 H 1.07998 * 119.98171 * 180.27468 * 20 19 18 36 36 H 1.07999 * 120.01243 * 179.70619 * 21 20 19 37 37 H 1.07994 * 120.01027 * 0.02562 * 24 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5285 -2.6365 0.0022 12 8 6.1349 -1.5862 0.0026 13 7 6.2024 -3.8038 0.0018 14 6 7.6674 -3.8038 0.0024 15 1 8.0304 -2.9623 0.5925 16 6 8.1779 -3.6773 -1.4343 17 8 7.8002 -4.8376 -2.1780 18 6 8.1695 -5.0918 0.6024 19 6 7.5315 -6.2839 0.3128 20 6 7.9944 -7.4668 0.8579 21 6 9.0887 -7.4578 1.7021 22 6 9.7248 -6.2641 1.9972 23 9 10.7948 -6.2542 2.8218 24 6 9.2637 -5.0804 1.4461 25 1 -0.4850 0.8401 -0.0004 26 1 3.8745 -0.6801 0.8912 27 1 3.8752 -0.6803 -0.8888 28 1 3.6585 -3.1502 -0.8893 29 1 3.6578 -3.1506 0.8908 30 1 5.7173 -4.6438 0.0011 31 1 7.7435 -2.7914 -1.8976 32 1 9.2643 -3.5879 -1.4273 33 1 8.0911 -4.8257 -3.1001 34 1 6.6734 -6.2913 -0.3429 35 1 7.4980 -8.3979 0.6275 36 1 9.4473 -8.3816 2.1316 37 1 9.7588 -4.1485 1.6759 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360768218.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:53 Heat of formation + Delta-G solvation = -140.834043 kcal Electronic energy + Delta-G solvation = -21289.560884 eV Core-core repulsion = 17751.919164 eV Total energy + Delta-G solvation = -3537.641721 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.90813 -41.26310 -39.90964 -37.82663 -35.75184 -35.46730 -33.44426 -32.51979 -31.35907 -29.54450 -27.79972 -24.87104 -23.83426 -23.30518 -21.74235 -21.12981 -19.32395 -18.61654 -18.44666 -17.53080 -17.15526 -17.02761 -16.82308 -16.63238 -16.53095 -16.20344 -15.48507 -15.10629 -14.86653 -14.70299 -14.50640 -14.24087 -14.20223 -13.68072 -13.39063 -13.07777 -12.91270 -12.85924 -12.54625 -12.10447 -11.96230 -11.93155 -11.75688 -11.39111 -11.07216 -10.77342 -10.73385 -10.20496 -9.93115 -9.64589 -8.30627 -6.33552 0.14623 0.22180 1.33997 1.36151 1.51001 1.66886 2.14962 2.35813 2.63705 3.05173 3.16068 3.35174 3.55284 3.82966 3.97704 4.09875 4.10765 4.24162 4.38748 4.41421 4.44157 4.50462 4.52397 4.68587 4.87246 5.00812 5.07469 5.13883 5.30380 5.36152 5.39116 5.46085 5.57918 5.62257 5.91264 6.24428 6.54551 6.73103 6.86555 7.27115 7.31847 8.85106 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.027802 B = 0.003328 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.881166 B = 8411.224606 C = 8437.512690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.013 3.987 3 Si 0.939 3.061 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.261 1.261 7 C -0.529 4.529 8 H 0.050 0.950 9 C 0.006 3.994 10 C -0.117 4.117 11 C 0.519 3.481 12 O -0.582 6.582 13 N -0.708 5.708 14 C 0.184 3.816 15 H 0.096 0.904 16 C 0.076 3.924 17 O -0.571 6.571 18 C -0.063 4.063 19 C -0.102 4.102 20 C -0.086 4.086 21 C -0.152 4.152 22 C 0.078 3.922 23 F -0.150 7.150 24 C -0.154 4.154 25 H 0.267 0.733 26 H 0.010 0.990 27 H 0.010 0.990 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.414 0.586 31 H 0.040 0.960 32 H 0.071 0.929 33 H 0.396 0.604 34 H 0.141 0.859 35 H 0.163 0.837 36 H 0.154 0.846 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.534 -17.234 -0.954 27.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.185 4.185 3 Si 0.764 3.236 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.185 1.185 7 C -0.567 4.567 8 H 0.068 0.932 9 C -0.032 4.032 10 C -0.157 4.157 11 C 0.307 3.693 12 O -0.462 6.462 13 N -0.362 5.362 14 C 0.079 3.921 15 H 0.114 0.886 16 C -0.003 4.003 17 O -0.379 6.379 18 C -0.064 4.064 19 C -0.120 4.120 20 C -0.104 4.104 21 C -0.170 4.170 22 C 0.058 3.942 23 F -0.128 7.128 24 C -0.173 4.173 25 H 0.076 0.924 26 H 0.029 0.971 27 H 0.028 0.972 28 H 0.121 0.879 29 H 0.119 0.881 30 H 0.252 0.748 31 H 0.058 0.942 32 H 0.089 0.911 33 H 0.245 0.755 34 H 0.159 0.841 35 H 0.180 0.820 36 H 0.172 0.828 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 21.596 -16.547 -0.353 27.209 hybrid contribution 0.240 0.920 -0.327 1.005 sum 21.836 -15.627 -0.679 26.860 Atomic orbital electron populations 1.70026 1.07820 1.28089 1.52568 1.25816 0.95494 1.02898 0.94288 0.85818 0.79244 0.79427 0.79153 1.19308 1.20470 1.18482 1.21443 0.91319 0.93696 1.50253 0.93208 1.19217 0.93858 0.93712 0.96430 1.21499 0.89192 0.99963 1.05027 1.21167 0.90983 0.83207 0.73905 1.90635 1.71212 1.33040 1.51292 1.45961 1.06119 1.08806 1.75280 1.19917 0.80746 0.95902 0.95546 0.88622 1.22395 0.98964 0.88064 0.90906 1.86398 1.81924 1.41288 1.28282 1.19484 0.95530 0.94823 0.96559 1.21205 1.00387 0.91457 0.98965 1.21343 0.94926 0.99360 0.94775 1.21467 0.97589 0.97247 1.00718 1.17825 0.87045 0.95381 0.93900 1.91476 1.53728 1.97440 1.70196 1.21059 0.98779 0.98098 0.99381 0.92397 0.97136 0.97175 0.87929 0.88069 0.74829 0.94207 0.91063 0.75478 0.84135 0.81986 0.82848 0.84329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.13 13.96 21.45 0.30 -58.83 16 2 C 0.01 0.75 5.47 84.65 0.46 1.21 16 3 Si 0.94 46.57 27.47 68.60 1.88 48.46 16 4 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 5 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 6 H -0.26 -12.81 6.54 99.48 0.65 -12.16 16 7 C -0.53 -30.43 9.66 25.60 0.25 -30.18 16 8 H 0.05 3.01 7.99 -2.91 -0.02 2.99 16 9 C 0.01 0.29 3.33 29.85 0.10 0.39 16 10 C -0.12 -4.36 5.64 29.85 0.17 -4.19 16 11 C 0.52 17.81 7.79 87.66 0.68 18.50 16 12 O -0.58 -24.51 15.64 -3.03 -0.05 -24.55 16 13 N -0.71 -17.59 4.97 -446.09 -2.22 -19.81 16 14 C 0.18 4.08 2.61 44.25 0.12 4.19 16 15 H 0.10 2.40 7.44 -2.39 -0.02 2.38 16 16 C 0.08 1.47 6.84 71.98 0.49 1.97 16 17 O -0.57 -9.37 12.06 -148.98 -1.80 -11.17 16 18 C -0.06 -1.20 4.83 -19.87 -0.10 -1.29 16 19 C -0.10 -1.62 8.06 22.27 0.18 -1.44 16 20 C -0.09 -1.12 10.04 22.26 0.22 -0.89 16 21 C -0.15 -2.22 10.03 22.31 0.22 -2.00 16 22 C 0.08 1.46 7.30 22.37 0.16 1.63 16 23 F -0.15 -3.12 17.27 44.97 0.78 -2.35 16 24 C -0.15 -2.95 9.65 22.31 0.22 -2.73 16 25 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 26 H 0.01 0.53 7.16 -2.39 -0.02 0.52 16 27 H 0.01 0.50 7.53 -2.39 -0.02 0.48 16 28 H 0.10 3.48 8.14 -2.39 -0.02 3.46 16 29 H 0.10 3.45 8.14 -2.39 -0.02 3.43 16 30 H 0.41 8.23 6.85 -92.71 -0.64 7.60 16 31 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 33 H 0.40 3.43 9.12 -74.06 -0.68 2.75 16 34 H 0.14 2.02 6.67 -2.91 -0.02 2.00 16 35 H 0.16 1.16 8.06 -2.91 -0.02 1.13 16 36 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 37 H 0.14 2.43 8.04 -2.91 -0.02 2.41 16 Total: -1.00 -74.22 321.16 1.82 -72.40 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -0.26 Total: 10.69 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: 3.18 Total: -14.85 kcal Atomic # 7 Polarization: -76.72 SS G_CDS: -1.92 Total: -78.64 kcal Atomic # 8 Polarization: -33.88 SS G_CDS: -1.84 Total: -35.72 kcal Atomic # 9 Polarization: -3.12 SS G_CDS: 0.78 Total: -2.35 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 1.88 Total: 48.46 kcal Total: -74.22 1.82 -72.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360768218.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.430 kcal (2) G-P(sol) polarization free energy of solvation -74.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds