Wall clock time and date at job start Tue Mar 31 2020 05:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86808 * 119.99685 * 2 1 4 4 H 1.48497 * 109.47128 * 269.99884 * 3 2 1 5 5 H 1.48498 * 109.47366 * 30.00175 * 3 2 1 6 6 H 1.48507 * 109.46775 * 150.00272 * 3 2 1 7 7 C 1.38792 * 120.00310 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00233 * 180.02562 * 7 2 1 9 9 S 1.76201 * 119.99994 * 359.97438 * 7 2 1 10 10 C 1.80993 * 100.00189 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47090 * 180.02562 * 10 9 7 12 12 C 1.53008 * 109.46912 * 179.97438 * 11 10 9 13 13 N 1.46903 * 109.46823 * 179.97438 * 12 11 10 14 14 C 1.48556 * 111.00051 * 290.12519 * 13 12 11 15 15 C 1.54375 * 104.59344 * 200.95769 * 14 13 12 16 16 C 1.54262 * 105.06151 * 23.85777 * 15 14 13 17 17 H 1.09002 * 110.32521 * 241.10068 * 16 15 14 18 18 C 1.50697 * 110.32461 * 118.99469 * 16 15 14 19 19 C 1.34509 * 125.79063 * 122.54391 * 18 16 15 20 20 C 1.41384 * 106.84164 * 179.88625 * 19 18 16 21 21 C 1.34511 * 106.84407 * 0.37598 * 20 19 18 22 22 O 1.34306 * 125.78851 * 302.85315 * 18 16 15 23 23 C 1.48821 * 110.96694 * 174.70681 * 13 12 11 24 24 H 0.97001 * 120.00436 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47441 * 59.99867 * 10 9 7 26 26 H 1.09009 * 109.47399 * 299.99926 * 10 9 7 27 27 H 1.08997 * 109.47358 * 60.00259 * 11 10 9 28 28 H 1.08999 * 109.46830 * 299.99494 * 11 10 9 29 29 H 1.09001 * 109.47116 * 60.00284 * 12 11 10 30 30 H 1.08996 * 109.47210 * 300.00080 * 12 11 10 31 31 H 1.09009 * 110.40917 * 82.18820 * 14 13 12 32 32 H 1.08990 * 110.41815 * 319.74464 * 14 13 12 33 33 H 1.08997 * 110.33138 * 264.96030 * 15 14 13 34 34 H 1.09002 * 110.32486 * 142.75497 * 15 14 13 35 35 H 1.08003 * 126.57853 * 0.02840 * 19 18 16 36 36 H 1.08006 * 126.57968 * 180.11764 * 20 19 18 37 37 H 1.07991 * 125.79260 * 179.74670 * 21 20 19 38 38 H 1.09001 * 110.45345 * 40.32853 * 23 13 12 39 39 H 1.09001 * 110.49959 * 277.79615 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6528 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2019 -0.0005 8 1 3.0903 -1.2019 -0.0001 9 16 1.1293 -2.7279 -0.0005 10 6 2.5159 -3.8913 -0.0005 11 6 1.9793 -5.3242 -0.0012 12 6 3.1515 -6.3076 -0.0018 13 7 2.6363 -7.6834 -0.0018 14 6 2.0033 -8.0148 1.3006 15 6 2.0117 -9.5576 1.3557 16 6 3.1562 -9.9861 0.4144 17 1 2.7669 -10.5932 -0.4030 18 6 4.2049 -10.7511 1.1799 19 6 4.6231 -12.0001 0.9073 20 6 5.6100 -12.3204 1.8678 21 6 5.7298 -11.2511 2.6750 22 8 4.8762 -10.3035 2.2535 23 6 3.7454 -8.6673 -0.1306 24 1 -0.4851 0.8400 0.0004 25 1 3.1245 -3.7312 0.8894 26 1 3.1245 -3.7313 -0.8906 27 1 1.3710 -5.4840 -0.8914 28 1 1.3705 -5.4845 0.8886 29 1 3.7602 -6.1480 0.8882 30 1 3.7600 -6.1471 -0.8918 31 1 0.9806 -7.6389 1.3328 32 1 2.5870 -7.6018 2.1231 33 1 1.0607 -9.9544 1.0004 34 1 2.2093 -9.8991 2.3718 35 1 4.2740 -12.6355 0.1068 36 1 6.1590 -13.2475 1.9420 37 1 6.3985 -11.1686 3.5189 38 1 4.6014 -8.3571 0.4687 39 1 4.0336 -8.7830 -1.1755 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000377910272.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:06 Heat of formation + Delta-G solvation = 3.866446 kcal Electronic energy + Delta-G solvation = -18845.348046 eV Core-core repulsion = 15880.194186 eV Total energy + Delta-G solvation = -2965.153860 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.85404 -39.07767 -34.64488 -33.23878 -32.41268 -31.51475 -29.76294 -27.96244 -25.76711 -24.99073 -22.24170 -21.97377 -21.78437 -20.63065 -19.92599 -17.58219 -17.43108 -16.27174 -16.07587 -15.78200 -14.96375 -14.78571 -14.33604 -14.24724 -13.87466 -13.42395 -13.08168 -13.03372 -12.93604 -12.56385 -12.38858 -11.91412 -11.71549 -11.46332 -11.26678 -11.19710 -11.04751 -10.93356 -10.75509 -10.59330 -10.27474 -10.17485 -9.50725 -9.03691 -8.71318 -8.52006 -8.27045 -6.49861 -6.20455 -3.90400 1.47146 2.35220 2.71911 3.23085 3.23667 3.30485 3.56564 3.93697 4.24822 4.39546 4.44168 4.50025 4.73703 4.82111 4.95513 5.15319 5.15613 5.24460 5.30322 5.37815 5.48295 5.53932 5.55505 5.59859 5.66819 5.77566 5.79706 5.84029 5.86938 5.90705 5.97676 6.11712 6.23262 6.36627 6.60442 6.75026 6.82122 6.89639 7.02208 7.62758 8.38973 9.25752 10.87730 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.043554 B = 0.002542 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.721610 B =11012.975595 C =11323.619664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.070 3.930 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.516 4.516 8 H 0.072 0.928 9 S -0.132 6.132 10 C -0.113 4.113 11 C -0.091 4.091 12 C 0.049 3.951 13 N -0.507 5.507 14 C 0.031 3.969 15 C -0.118 4.118 16 C -0.014 4.014 17 H 0.110 0.890 18 C 0.002 3.998 19 C -0.213 4.213 20 C -0.214 4.214 21 C -0.045 4.045 22 O -0.173 6.173 23 C 0.037 3.963 24 H 0.267 0.733 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.035 0.965 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.046 0.954 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.147 0.853 36 H 0.147 0.853 37 H 0.201 0.799 38 H 0.049 0.951 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.036 -24.098 3.116 25.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.138 4.138 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.664 4.664 8 H 0.090 0.910 9 S 0.096 5.904 10 C -0.262 4.262 11 C -0.130 4.130 12 C -0.080 4.080 13 N -0.231 5.231 14 C -0.097 4.097 15 C -0.156 4.156 16 C -0.033 4.033 17 H 0.128 0.872 18 C -0.048 4.048 19 C -0.232 4.232 20 C -0.233 4.233 21 C -0.113 4.113 22 O -0.069 6.069 23 C -0.091 4.091 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.093 0.907 28 H 0.083 0.917 29 H 0.054 0.946 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.065 0.935 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.165 0.835 36 H 0.165 0.835 37 H 0.218 0.782 38 H 0.067 0.933 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.326 -23.895 2.797 25.149 hybrid contribution 2.706 1.095 0.688 2.999 sum 10.032 -22.799 3.485 25.151 Atomic orbital electron populations 1.70023 1.05905 1.27280 1.47337 1.25014 0.95085 0.99074 0.94669 0.86170 0.79428 0.81584 0.78357 1.20268 1.20770 1.19729 1.22692 0.94508 0.90831 1.58352 0.91009 1.84625 1.09591 0.99370 1.96836 1.23237 1.02825 0.97442 1.02685 1.21224 0.96825 0.91786 1.03170 1.22362 0.97367 0.87423 1.00883 1.65503 1.23962 1.02744 1.30906 1.23174 1.01106 0.94622 0.90836 1.22408 0.98065 0.95814 0.99303 1.20557 0.91005 0.95623 0.96075 0.87163 1.22368 0.97977 0.94701 0.89790 1.21606 1.01676 0.96554 1.03378 1.21829 1.02621 1.00704 0.98185 1.24040 0.97050 0.88060 1.02149 1.84025 1.43137 1.41242 1.38503 1.23218 0.93677 0.90677 1.01524 0.92334 0.92405 0.92146 0.90720 0.91732 0.94641 0.90721 0.89303 0.93518 0.90109 0.90994 0.83492 0.83550 0.78234 0.93305 0.89506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.26 13.22 55.49 0.73 -25.53 16 2 C 0.07 2.03 5.49 -17.44 -0.10 1.93 16 3 Si 0.92 21.76 29.55 -169.99 -5.02 16.74 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.52 -15.00 9.50 30.94 0.29 -14.70 16 8 H 0.07 2.03 7.80 -52.49 -0.41 1.62 16 9 S -0.13 -3.53 21.44 -107.50 -2.30 -5.83 16 10 C -0.11 -2.32 5.67 37.16 0.21 -2.11 16 11 C -0.09 -1.54 5.27 -26.73 -0.14 -1.68 16 12 C 0.05 0.69 4.81 -3.82 -0.02 0.67 16 13 N -0.51 -6.38 5.38 -229.74 -1.24 -7.61 16 14 C 0.03 0.35 5.74 -2.19 -0.01 0.34 16 15 C -0.12 -1.12 6.64 -25.35 -0.17 -1.29 16 16 C -0.01 -0.13 3.50 -90.39 -0.32 -0.44 16 17 H 0.11 0.86 8.12 -51.93 -0.42 0.44 16 18 C 0.00 0.02 5.56 -35.63 -0.20 -0.18 16 19 C -0.21 -1.93 10.79 -39.70 -0.43 -2.36 16 20 C -0.21 -1.79 10.91 -39.70 -0.43 -2.22 16 21 C -0.05 -0.38 12.09 29.41 0.36 -0.03 16 22 O -0.17 -1.88 10.56 5.67 0.06 -1.82 16 23 C 0.04 0.40 6.04 -2.03 -0.01 0.39 16 24 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 25 H 0.06 1.19 8.14 -51.92 -0.42 0.76 16 26 H 0.06 1.23 8.14 -51.91 -0.42 0.81 16 27 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 28 H 0.06 1.10 7.26 -51.93 -0.38 0.72 16 29 H 0.04 0.50 7.88 -51.93 -0.41 0.09 16 30 H 0.07 1.02 8.13 -51.93 -0.42 0.59 16 31 H 0.09 1.05 7.76 -51.92 -0.40 0.64 16 32 H 0.05 0.57 7.82 -51.93 -0.41 0.16 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.69 7.70 -51.93 -0.40 0.29 16 35 H 0.15 1.06 8.06 -52.48 -0.42 0.64 16 36 H 0.15 0.89 8.06 -52.48 -0.42 0.47 16 37 H 0.20 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.05 0.57 7.63 -51.93 -0.40 0.17 16 39 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 336.79 15.07 5.08 5.08 Total: -1.00 -32.25 336.79 -9.82 -42.07 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -6.16 Total: -1.40 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: -0.96 Total: -21.69 kcal Atomic # 7 Polarization: -32.64 SS G_CDS: -0.50 Total: -33.14 kcal Atomic # 8 Polarization: -1.88 SS G_CDS: 0.06 Total: -1.82 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: -3.53 SS G_CDS: -2.30 Total: -5.83 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.25 -9.82 -42.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377910272.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.939 kcal (2) G-P(sol) polarization free energy of solvation -32.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds