Wall clock time and date at job start Tue Mar 31 2020 05:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86808 * 119.99685 * 2 1 4 4 H 1.48497 * 109.47128 * 269.99884 * 3 2 1 5 5 H 1.48498 * 109.47366 * 30.00175 * 3 2 1 6 6 H 1.48507 * 109.46775 * 150.00272 * 3 2 1 7 7 C 1.38792 * 120.00310 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00233 * 180.02562 * 7 2 1 9 9 S 1.76201 * 119.99994 * 359.97438 * 7 2 1 10 10 C 1.80993 * 100.00189 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47090 * 180.02562 * 10 9 7 12 12 C 1.53008 * 109.46912 * 179.97438 * 11 10 9 13 13 N 1.46903 * 109.46823 * 179.97438 * 12 11 10 14 14 C 1.48556 * 111.00051 * 290.12519 * 13 12 11 15 15 C 1.54375 * 104.59344 * 200.95769 * 14 13 12 16 16 C 1.54262 * 105.06151 * 23.85777 * 15 14 13 17 17 H 1.09002 * 110.32521 * 241.10068 * 16 15 14 18 18 C 1.50697 * 110.32461 * 118.99469 * 16 15 14 19 19 C 1.34509 * 125.79063 * 122.54391 * 18 16 15 20 20 C 1.41384 * 106.84164 * 179.88625 * 19 18 16 21 21 C 1.34511 * 106.84407 * 0.37598 * 20 19 18 22 22 O 1.34306 * 125.78851 * 302.85315 * 18 16 15 23 23 C 1.48821 * 110.96694 * 174.70681 * 13 12 11 24 24 H 0.97001 * 120.00436 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47441 * 59.99867 * 10 9 7 26 26 H 1.09009 * 109.47399 * 299.99926 * 10 9 7 27 27 H 1.08997 * 109.47358 * 60.00259 * 11 10 9 28 28 H 1.08999 * 109.46830 * 299.99494 * 11 10 9 29 29 H 1.09001 * 109.47116 * 60.00284 * 12 11 10 30 30 H 1.08996 * 109.47210 * 300.00080 * 12 11 10 31 31 H 1.09009 * 110.40917 * 82.18820 * 14 13 12 32 32 H 1.08990 * 110.41815 * 319.74464 * 14 13 12 33 33 H 1.08997 * 110.33138 * 264.96030 * 15 14 13 34 34 H 1.09002 * 110.32486 * 142.75497 * 15 14 13 35 35 H 1.08003 * 126.57853 * 0.02840 * 19 18 16 36 36 H 1.08006 * 126.57968 * 180.11764 * 20 19 18 37 37 H 1.07991 * 125.79260 * 179.74670 * 21 20 19 38 38 H 1.09001 * 110.45345 * 40.32853 * 23 13 12 39 39 H 1.09001 * 110.49959 * 277.79615 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6528 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2019 -0.0005 8 1 3.0903 -1.2019 -0.0001 9 16 1.1293 -2.7279 -0.0005 10 6 2.5159 -3.8913 -0.0005 11 6 1.9793 -5.3242 -0.0012 12 6 3.1515 -6.3076 -0.0018 13 7 2.6363 -7.6834 -0.0018 14 6 2.0033 -8.0148 1.3006 15 6 2.0117 -9.5576 1.3557 16 6 3.1562 -9.9861 0.4144 17 1 2.7669 -10.5932 -0.4030 18 6 4.2049 -10.7511 1.1799 19 6 4.6231 -12.0001 0.9073 20 6 5.6100 -12.3204 1.8678 21 6 5.7298 -11.2511 2.6750 22 8 4.8762 -10.3035 2.2535 23 6 3.7454 -8.6673 -0.1306 24 1 -0.4851 0.8400 0.0004 25 1 3.1245 -3.7312 0.8894 26 1 3.1245 -3.7313 -0.8906 27 1 1.3710 -5.4840 -0.8914 28 1 1.3705 -5.4845 0.8886 29 1 3.7602 -6.1480 0.8882 30 1 3.7600 -6.1471 -0.8918 31 1 0.9806 -7.6389 1.3328 32 1 2.5870 -7.6018 2.1231 33 1 1.0607 -9.9544 1.0004 34 1 2.2093 -9.8991 2.3718 35 1 4.2740 -12.6355 0.1068 36 1 6.1590 -13.2475 1.9420 37 1 6.3985 -11.1686 3.5189 38 1 4.6014 -8.3571 0.4687 39 1 4.0336 -8.7830 -1.1755 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000377910272.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:06 Heat of formation + Delta-G solvation = -15.538727 kcal Electronic energy + Delta-G solvation = -18846.189518 eV Core-core repulsion = 15880.194186 eV Total energy + Delta-G solvation = -2965.995332 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.52096 -39.99795 -35.80841 -34.60929 -33.93433 -32.58007 -30.62337 -28.80473 -27.82973 -26.33677 -23.13819 -22.95021 -22.54679 -21.69109 -20.71009 -19.54985 -18.26964 -17.11502 -16.90458 -16.89938 -16.76599 -16.19009 -15.93048 -15.27099 -14.91589 -14.72259 -14.40475 -13.82012 -13.70717 -13.60895 -13.48140 -13.22985 -12.98955 -12.94641 -12.85106 -12.58542 -12.34552 -12.29190 -12.04890 -11.75536 -11.59961 -11.35217 -11.14717 -10.82651 -10.32995 -9.56323 -9.33547 -8.67397 -8.37687 -6.14233 0.80659 1.30858 1.39147 1.48259 1.71660 1.74006 2.10249 2.27788 2.95025 2.96319 3.32132 3.59741 3.68433 3.71336 3.99752 4.11067 4.18958 4.22204 4.28410 4.32062 4.37746 4.43352 4.54724 4.67200 4.72996 4.77398 4.81726 4.90776 4.97941 5.00578 5.07481 5.12023 5.18029 5.25611 5.29793 5.39075 5.63481 5.81463 5.95692 6.17657 6.24330 7.04265 8.71772 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.043554 B = 0.002542 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.721610 B =11012.975595 C =11323.619664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.014 3.986 3 Si 0.995 3.005 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.264 1.264 7 C -0.539 4.539 8 H 0.072 0.928 9 S -0.197 6.197 10 C -0.088 4.088 11 C -0.079 4.079 12 C 0.060 3.940 13 N -0.514 5.514 14 C 0.027 3.973 15 C -0.111 4.111 16 C -0.008 4.008 17 H 0.129 0.871 18 C -0.018 4.018 19 C -0.216 4.216 20 C -0.225 4.225 21 C -0.052 4.052 22 O -0.196 6.196 23 C 0.039 3.961 24 H 0.272 0.728 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.035 0.965 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.037 0.963 33 H 0.094 0.906 34 H 0.070 0.930 35 H 0.163 0.837 36 H 0.167 0.833 37 H 0.229 0.771 38 H 0.038 0.962 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.493 -25.100 3.022 27.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.191 4.191 3 Si 0.817 3.183 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.188 1.188 7 C -0.686 4.686 8 H 0.090 0.910 9 S 0.032 5.968 10 C -0.237 4.237 11 C -0.117 4.117 12 C -0.070 4.070 13 N -0.237 5.237 14 C -0.101 4.101 15 C -0.149 4.149 16 C -0.026 4.026 17 H 0.146 0.854 18 C -0.068 4.068 19 C -0.235 4.235 20 C -0.244 4.244 21 C -0.119 4.119 22 O -0.093 6.093 23 C -0.089 4.089 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.053 0.947 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.055 0.945 33 H 0.112 0.888 34 H 0.089 0.911 35 H 0.181 0.819 36 H 0.185 0.815 37 H 0.245 0.755 38 H 0.057 0.943 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 8.783 -24.919 2.701 26.559 hybrid contribution 2.280 1.291 0.740 2.723 sum 11.063 -23.628 3.441 26.316 Atomic orbital electron populations 1.70154 1.07679 1.28566 1.47954 1.26086 0.96069 1.03154 0.93762 0.85003 0.78130 0.76307 0.78872 1.19199 1.19839 1.18785 1.23035 0.94710 0.91999 1.58893 0.90978 1.84636 1.14022 1.01145 1.97027 1.23157 1.00157 0.97589 1.02812 1.21089 0.97773 0.90170 1.02711 1.22162 0.95843 0.87792 1.01243 1.65470 1.24738 1.02144 1.31396 1.23203 1.00484 0.96269 0.90119 1.22366 0.98975 0.94063 0.99532 1.20556 0.90654 0.95047 0.96366 0.85351 1.22506 0.98770 0.95318 0.90253 1.21940 1.01459 0.96395 1.03737 1.22181 1.02676 1.01572 0.97932 1.24726 0.96706 0.87640 1.02789 1.84010 1.43887 1.42379 1.39065 1.23248 0.92735 0.90836 1.02092 0.91936 0.92272 0.91785 0.91306 0.92075 0.94682 0.90003 0.89827 0.94481 0.88779 0.91130 0.81890 0.81509 0.75459 0.94327 0.88447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.43 13.22 21.65 0.29 -55.14 16 2 C 0.01 0.82 5.49 84.86 0.47 1.28 16 3 Si 1.00 44.43 29.55 68.60 2.03 46.45 16 4 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 5 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 6 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 7 C -0.54 -31.66 9.50 67.95 0.65 -31.02 16 8 H 0.07 4.08 7.80 -2.91 -0.02 4.06 16 9 S -0.20 -10.73 21.44 -56.49 -1.21 -11.94 16 10 C -0.09 -3.62 5.67 71.98 0.41 -3.21 16 11 C -0.08 -2.63 5.27 30.60 0.16 -2.47 16 12 C 0.06 1.62 4.81 86.31 0.42 2.03 16 13 N -0.51 -12.37 5.38 -880.76 -4.73 -17.11 16 14 C 0.03 0.61 5.74 86.45 0.50 1.11 16 15 C -0.11 -1.99 6.64 31.49 0.21 -1.78 16 16 C -0.01 -0.13 3.50 -10.64 -0.04 -0.17 16 17 H 0.13 1.70 8.12 -2.39 -0.02 1.68 16 18 C -0.02 -0.34 5.56 24.83 0.14 -0.21 16 19 C -0.22 -3.52 10.79 22.19 0.24 -3.28 16 20 C -0.22 -3.30 10.91 22.19 0.24 -3.06 16 21 C -0.05 -0.79 12.09 66.97 0.81 0.02 16 22 O -0.20 -4.08 10.56 -2.61 -0.03 -4.11 16 23 C 0.04 0.78 6.04 86.40 0.52 1.30 16 24 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 25 H 0.06 2.42 8.14 -2.40 -0.02 2.40 16 26 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 27 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.06 2.09 7.26 -2.39 -0.02 2.07 16 29 H 0.03 0.96 7.88 -2.39 -0.02 0.94 16 30 H 0.08 2.11 8.13 -2.39 -0.02 2.09 16 31 H 0.08 1.95 7.76 -2.38 -0.02 1.93 16 32 H 0.04 0.90 7.82 -2.39 -0.02 0.88 16 33 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.07 1.29 7.70 -2.39 -0.02 1.27 16 35 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 36 H 0.17 1.62 8.06 -2.91 -0.02 1.60 16 37 H 0.23 1.74 8.06 -2.92 -0.02 1.71 16 38 H 0.04 0.86 7.63 -2.39 -0.02 0.84 16 39 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -69.57 336.79 2.07 -67.50 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: 1.01 Total: 13.78 kcal Atomic # 6 Polarization: -44.15 SS G_CDS: 4.72 Total: -39.44 kcal Atomic # 7 Polarization: -67.80 SS G_CDS: -4.45 Total: -72.25 kcal Atomic # 8 Polarization: -4.08 SS G_CDS: -0.03 Total: -4.11 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 16 Polarization: -10.73 SS G_CDS: -1.21 Total: -11.94 kcal Total: -69.57 2.07 -67.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377910272.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.966 kcal (2) G-P(sol) polarization free energy of solvation -69.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds