Wall clock time and date at job start Tue Mar 31 2020 05:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37957 * 120.05100 * 2 1 4 4 F 1.35104 * 119.84322 * 359.97438 * 3 2 1 5 5 C 1.38759 * 120.30792 * 179.72669 * 3 2 1 6 6 C 1.37993 * 120.41284 * 0.25247 * 5 3 2 7 7 C 1.38886 * 120.09914 * 0.02562 * 6 5 3 8 8 N 1.38963 * 120.15540 * 179.97438 * 7 6 5 9 9 C 1.39790 * 120.05672 * 180.25259 * 2 1 3 10 10 C 1.47283 * 120.20142 * 0.02562 * 9 2 1 11 11 O 1.21527 * 120.00171 * 270.29567 * 10 9 2 12 12 O 1.34769 * 120.00418 * 90.29205 * 10 9 2 13 13 C 1.45198 * 117.00535 * 179.97438 * 12 10 9 14 14 C 1.52995 * 109.47594 * 180.02562 * 13 12 10 15 15 C 1.52995 * 109.47404 * 180.02562 * 14 13 12 16 16 C 1.50696 * 109.47058 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00568 * 0.02562 * 16 15 14 18 18 C 1.37882 * 119.99928 * 180.02562 * 16 15 14 19 19 N 1.31519 * 120.00117 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 120.00143 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47169 * 59.99794 * 20 18 16 22 22 H 1.48491 * 109.47357 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47159 * 299.99966 * 20 18 16 24 24 H 1.09000 * 109.47424 * 90.00564 * 1 2 3 25 25 H 1.09003 * 109.47119 * 209.99835 * 1 2 3 26 26 H 1.08996 * 109.47773 * 330.00122 * 1 2 3 27 27 H 1.07998 * 119.78718 * 180.27294 * 5 3 2 28 28 H 1.08007 * 119.94932 * 180.02562 * 6 5 3 29 29 H 0.96994 * 119.99794 * 0.02562 * 8 7 6 30 30 H 0.97002 * 119.99806 * 179.97438 * 8 7 6 31 31 H 1.09007 * 109.47314 * 300.00535 * 13 12 10 32 32 H 1.09007 * 109.46833 * 60.00007 * 13 12 10 33 33 H 1.09007 * 109.46985 * 300.00440 * 14 13 12 34 34 H 1.09002 * 109.47268 * 59.99513 * 14 13 12 35 35 H 1.08993 * 109.47307 * 299.99916 * 15 14 13 36 36 H 1.09003 * 109.47052 * 60.00217 * 15 14 13 37 37 H 0.96999 * 119.99652 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1941 0.0000 4 9 1.5201 2.3629 -0.0005 5 6 3.5854 1.2004 0.0057 6 6 4.2893 0.0135 0.0062 7 6 3.6111 -1.1985 0.0004 8 7 4.3187 -2.3945 0.0004 9 6 2.2071 -1.2099 -0.0053 10 6 1.4765 -2.4887 -0.0115 11 8 1.1699 -3.0185 1.0383 12 8 1.1477 -3.0714 -1.1814 13 6 0.4285 -4.3308 -1.1116 14 6 0.1457 -4.8359 -2.5278 15 6 -0.6127 -6.1627 -2.4541 16 6 -0.8918 -6.6598 -3.8491 17 1 -0.5610 -6.0870 -4.7029 18 6 -1.5696 -7.8460 -4.0355 19 7 -1.9729 -8.5433 -2.9959 20 14 -1.9150 -8.4627 -5.7647 21 1 -0.6314 -8.6661 -6.4833 22 1 -2.6511 -9.7503 -5.6932 23 1 -2.7364 -7.4620 -6.4922 24 1 -0.3634 -0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 4.1177 2.1400 0.0101 28 1 5.3692 0.0270 0.0111 29 1 5.2886 -2.3841 0.0048 30 1 3.8427 -3.2397 -0.0033 31 1 1.0324 -5.0650 -0.5782 32 1 -0.5134 -4.1825 -0.5834 33 1 -0.4580 -4.1018 -3.0616 34 1 1.0878 -4.9843 -3.0556 35 1 -0.0094 -6.8969 -1.9203 36 1 -1.5549 -6.0138 -1.9266 37 1 -2.4494 -9.3780 -3.1271 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398801796.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:00 Heat of formation + Delta-G solvation = -146.787082 kcal Electronic energy + Delta-G solvation = -21164.451946 eV Core-core repulsion = 17626.552083 eV Total energy + Delta-G solvation = -3537.899864 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.75014 -41.89534 -40.00517 -37.81255 -35.95098 -35.91125 -33.87679 -33.50409 -30.31746 -28.95121 -28.06399 -25.90625 -24.61481 -22.57586 -22.20883 -22.00513 -19.30481 -18.87024 -18.68112 -18.07019 -17.79332 -17.37253 -16.87700 -16.59710 -16.50118 -16.21637 -15.57091 -14.92757 -14.55010 -14.50852 -14.28476 -14.11482 -13.91204 -13.84587 -13.72946 -13.65874 -13.08621 -12.81525 -12.59555 -12.54271 -12.37893 -12.11873 -11.84099 -11.46079 -11.45693 -11.38455 -11.26170 -10.57440 -10.05747 -8.61231 -8.22506 -6.34156 -0.11367 0.26031 0.83841 1.41083 1.44285 1.51516 1.56299 2.40788 2.46465 2.68127 3.11384 3.32353 3.48833 3.60849 3.80868 3.95135 4.00196 4.13523 4.30807 4.35415 4.44996 4.52318 4.72358 4.76354 4.80230 4.92633 4.98138 5.04572 5.10349 5.15757 5.29082 5.47442 5.62072 5.70406 5.78894 6.17864 6.19908 6.49463 6.69603 6.81414 7.35425 8.89406 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.027946 B = 0.003078 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.674627 B = 9095.623227 C = 9363.128900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.041 4.041 3 C 0.018 3.982 4 F -0.144 7.144 5 C -0.064 4.064 6 C -0.167 4.167 7 C 0.254 3.746 8 N -0.854 5.854 9 C -0.200 4.200 10 C 0.523 3.477 11 O -0.526 6.526 12 O -0.349 6.349 13 C 0.073 3.927 14 C -0.093 4.093 15 C 0.027 3.973 16 C -0.545 4.545 17 H 0.064 0.936 18 C 0.000 4.000 19 N -0.933 5.933 20 Si 0.968 3.032 21 H -0.265 1.265 22 H -0.284 1.284 23 H -0.266 1.266 24 H 0.089 0.911 25 H 0.055 0.945 26 H 0.092 0.908 27 H 0.174 0.826 28 H 0.178 0.822 29 H 0.422 0.578 30 H 0.397 0.603 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.068 0.932 35 H -0.001 1.001 36 H -0.004 1.004 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.968 20.172 5.982 25.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.043 4.043 3 C -0.003 4.003 4 F -0.123 7.123 5 C -0.083 4.083 6 C -0.189 4.189 7 C 0.144 3.856 8 N -0.392 5.392 9 C -0.207 4.207 10 C 0.367 3.633 11 O -0.416 6.416 12 O -0.265 6.265 13 C 0.000 4.000 14 C -0.131 4.131 15 C -0.010 4.010 16 C -0.583 4.583 17 H 0.083 0.917 18 C -0.198 4.198 19 N -0.573 5.573 20 Si 0.792 3.208 21 H -0.190 1.190 22 H -0.209 1.209 23 H -0.191 1.191 24 H 0.107 0.893 25 H 0.074 0.926 26 H 0.110 0.890 27 H 0.192 0.808 28 H 0.196 0.804 29 H 0.254 0.746 30 H 0.224 0.776 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.018 0.982 36 H 0.015 0.985 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 14.756 19.863 6.323 25.540 hybrid contribution -0.751 -1.134 -0.410 1.420 sum 14.005 18.730 5.913 24.123 Atomic orbital electron populations 1.20888 0.89924 1.03616 1.03924 1.19657 0.96957 0.90538 0.97109 1.17117 0.90773 0.80013 1.12390 1.91455 1.80490 1.45502 1.94839 1.21398 0.90896 1.00888 0.95126 1.20769 1.01803 0.88159 1.08159 1.17794 0.88151 0.88972 0.90690 1.42448 1.10387 1.04545 1.81787 1.18182 0.92470 0.89521 1.20521 1.21350 0.75730 0.84646 0.81592 1.90862 1.52022 1.64742 1.33937 1.86704 1.68156 1.37739 1.33866 1.23251 0.95443 0.81392 0.99904 1.21459 1.00998 0.97529 0.93095 1.18922 0.94207 0.91486 0.96405 1.21595 1.36590 1.06724 0.93400 0.91730 1.25997 0.95297 0.96945 1.01550 1.70090 1.39589 1.15592 1.32024 0.85457 0.78735 0.77505 0.79108 1.18985 1.20911 1.19118 0.89274 0.92637 0.88955 0.80833 0.80431 0.74573 0.77561 0.91193 0.91853 0.91704 0.91331 0.98248 0.98515 0.92650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 9.43 71.23 0.67 -2.36 16 2 C -0.04 -1.00 5.92 -19.56 -0.12 -1.12 16 3 C 0.02 0.37 7.23 22.33 0.16 0.53 16 4 F -0.14 -3.06 16.45 44.97 0.74 -2.32 16 5 C -0.06 -0.89 10.00 22.34 0.22 -0.67 16 6 C -0.17 -2.17 9.88 22.37 0.22 -1.95 16 7 C 0.25 4.94 6.77 38.69 0.26 5.20 16 8 N -0.85 -13.52 8.99 -50.90 -0.46 -13.98 16 9 C -0.20 -5.24 5.77 -20.00 -0.12 -5.35 16 10 C 0.52 16.71 4.61 70.20 0.32 17.03 16 11 O -0.53 -19.50 16.89 19.75 0.33 -19.16 16 12 O -0.35 -11.78 10.23 -56.80 -0.58 -12.36 16 13 C 0.07 2.71 5.48 71.98 0.39 3.10 16 14 C -0.09 -3.85 5.53 30.59 0.17 -3.68 16 15 C 0.03 1.41 4.97 29.85 0.15 1.56 16 16 C -0.55 -30.72 9.11 25.60 0.23 -30.48 16 17 H 0.06 3.46 7.74 -2.91 -0.02 3.43 16 18 C 0.00 0.01 5.46 84.66 0.46 0.47 16 19 N -0.93 -56.52 13.29 21.45 0.28 -56.23 16 20 Si 0.97 43.76 29.54 68.60 2.03 45.79 16 21 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 22 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 23 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 24 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.05 1.49 7.09 -2.39 -0.02 1.48 16 26 H 0.09 1.89 7.63 -2.39 -0.02 1.87 16 27 H 0.17 1.24 8.06 -2.91 -0.02 1.22 16 28 H 0.18 0.91 8.06 -2.91 -0.02 0.89 16 29 H 0.42 3.59 8.84 -92.71 -0.82 2.77 16 30 H 0.40 7.59 7.68 -92.71 -0.71 6.88 16 31 H 0.07 2.53 8.14 -2.38 -0.02 2.51 16 32 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 33 H 0.06 2.62 8.14 -2.38 -0.02 2.60 16 34 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 35 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 36 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 37 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -69.66 327.24 4.96 -64.70 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -0.42 Total: 11.27 kcal Atomic # 6 Polarization: -20.74 SS G_CDS: 3.04 Total: -17.71 kcal Atomic # 7 Polarization: -70.03 SS G_CDS: -0.17 Total: -70.21 kcal Atomic # 8 Polarization: -31.27 SS G_CDS: -0.25 Total: -31.52 kcal Atomic # 9 Polarization: -3.06 SS G_CDS: 0.74 Total: -2.32 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -69.66 4.96 -64.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398801796.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.089 kcal (2) G-P(sol) polarization free energy of solvation -69.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds