Wall clock time and date at job start Tue Mar 31 2020 05:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42895 * 113.99825 * 2 1 4 4 C 1.53000 * 109.46997 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47009 * 65.00135 * 4 3 2 6 6 C 1.36874 * 120.00013 * 269.99968 * 5 4 3 7 7 H 1.08007 * 119.99589 * 18.88885 * 6 5 4 8 8 C 1.39048 * 120.00333 * 198.89421 * 6 5 4 9 9 N 1.31359 * 119.99850 * 15.91752 * 8 6 5 10 10 Si 1.86801 * 120.00343 * 195.91897 * 8 6 5 11 11 H 1.48503 * 109.46929 * 64.99487 * 10 8 6 12 12 H 1.48492 * 109.47142 * 184.99643 * 10 8 6 13 13 H 1.48501 * 109.46816 * 304.99925 * 10 8 6 14 14 C 1.34775 * 120.00149 * 90.00227 * 5 4 3 15 15 O 1.21596 * 119.99819 * 242.73051 * 14 5 4 16 16 C 1.47726 * 120.00568 * 62.73510 * 14 5 4 17 17 C 1.39671 * 120.13644 * 21.90228 * 16 14 5 18 18 C 1.37922 * 119.90114 * 179.97438 * 17 16 14 19 19 C 1.38365 * 120.17870 * 359.75524 * 18 17 16 20 20 C 1.38570 * 120.27515 * 0.50873 * 19 18 17 21 21 F 1.35098 * 119.94697 * 179.77045 * 20 19 18 22 22 C 1.38192 * 120.10402 * 359.48369 * 20 19 18 23 23 C 1.50701 * 120.09212 * 180.23412 * 22 20 19 24 24 H 1.09001 * 109.47135 * 300.00242 * 1 2 3 25 25 H 1.08998 * 109.47272 * 60.00164 * 1 2 3 26 26 H 1.08998 * 109.47212 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47413 * 60.00294 * 3 2 1 28 28 H 1.08993 * 109.47494 * 300.00098 * 3 2 1 29 29 H 1.09003 * 109.47150 * 304.99926 * 4 3 2 30 30 H 1.09000 * 109.47162 * 184.99646 * 4 3 2 31 31 H 0.97001 * 120.00079 * 184.95580 * 9 8 6 32 32 H 1.07999 * 120.04887 * 0.02562 * 17 16 14 33 33 H 1.07992 * 119.91374 * 180.02562 * 18 17 16 34 34 H 1.07992 * 119.86324 * 180.24744 * 19 18 17 35 35 H 1.08996 * 109.46583 * 95.76486 * 23 22 20 36 36 H 1.09002 * 109.46913 * 215.76158 * 23 22 20 37 37 H 1.09000 * 109.46999 * 335.76213 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.0977 -0.7968 -1.3344 7 1 3.5950 -1.4287 -0.6172 8 6 4.8680 -1.3657 -2.3426 9 7 5.7207 -0.6260 -3.0143 10 14 4.6903 -3.1819 -2.7419 11 1 3.3273 -3.4412 -3.2714 12 1 5.6989 -3.5655 -3.7620 13 1 4.9031 -3.9827 -1.5096 14 6 4.2634 1.3329 -2.3200 15 8 3.6112 1.2230 -3.3403 16 6 5.3700 2.3092 -2.2523 17 6 6.3911 2.1477 -1.3132 18 6 7.4223 3.0618 -1.2546 19 6 7.4504 4.1355 -2.1270 20 6 6.4383 4.3058 -3.0580 21 9 6.4699 5.3590 -3.9035 22 6 5.3997 3.3968 -3.1269 23 6 4.3019 3.5794 -4.1431 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8464 -0.8899 29 1 3.8508 0.5685 0.8427 30 1 3.9784 2.1765 0.0901 31 1 6.2055 -1.0046 -3.7644 32 1 6.3738 1.3079 -0.6344 33 1 8.2121 2.9370 -0.5289 34 1 8.2623 4.8459 -2.0794 35 1 4.5225 2.9818 -5.0275 36 1 3.3528 3.2574 -3.7144 37 1 4.2364 4.6311 -4.4221 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399597214.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:41 Heat of formation + Delta-G solvation = -96.380199 kcal Electronic energy + Delta-G solvation = -22845.421581 eV Core-core repulsion = 19309.707524 eV Total energy + Delta-G solvation = -3535.714057 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.84509 -41.03020 -39.12658 -38.42324 -36.35064 -33.82640 -33.54123 -31.61493 -30.33278 -28.13320 -27.26560 -26.47295 -24.63458 -23.43519 -22.50156 -21.22234 -19.25802 -18.03017 -17.52388 -17.27171 -17.08319 -16.63861 -16.57512 -16.42696 -16.30830 -15.81772 -15.48147 -15.46416 -14.55155 -14.31178 -14.12450 -13.67401 -13.57724 -13.27769 -13.16782 -12.96956 -12.78236 -12.73113 -12.60145 -12.57507 -12.38217 -12.13239 -12.09614 -11.89081 -10.91374 -10.52236 -10.29974 -9.73771 -9.49620 -9.26835 -8.15624 -5.56003 0.01406 0.31140 1.40526 1.47660 1.52227 1.99814 2.42533 2.85475 2.98787 3.08708 3.30783 3.45497 3.87011 3.92984 4.15364 4.26155 4.29346 4.45048 4.47377 4.50976 4.58993 4.61393 4.67683 4.70202 4.73619 4.85394 4.90384 5.07414 5.13193 5.19807 5.28302 5.47428 5.58623 5.65093 6.02711 6.17787 6.42117 7.04314 7.38079 7.68996 8.07756 8.95023 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.015073 B = 0.007172 C = 0.005837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.149168 B = 3903.329648 C = 4796.127442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.402 6.402 3 C 0.049 3.951 4 C 0.127 3.873 5 N -0.551 5.551 6 C -0.272 4.272 7 H 0.086 0.914 8 C -0.029 4.029 9 N -0.908 5.908 10 Si 0.969 3.031 11 H -0.292 1.292 12 H -0.292 1.292 13 H -0.260 1.260 14 C 0.614 3.386 15 O -0.563 6.563 16 C -0.093 4.093 17 C -0.069 4.069 18 C -0.102 4.102 19 C -0.129 4.129 20 C 0.068 3.932 21 F -0.143 7.143 22 C -0.105 4.105 23 C -0.095 4.095 24 H 0.060 0.940 25 H 0.029 0.971 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.022 0.978 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.258 0.742 32 H 0.124 0.876 33 H 0.169 0.831 34 H 0.168 0.832 35 H 0.055 0.945 36 H 0.062 0.938 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.042 9.047 7.760 11.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.322 6.322 3 C -0.029 4.029 4 C 0.003 3.997 5 N -0.279 5.279 6 C -0.399 4.399 7 H 0.104 0.896 8 C -0.227 4.227 9 N -0.552 5.552 10 Si 0.796 3.204 11 H -0.219 1.219 12 H -0.219 1.219 13 H -0.185 1.185 14 C 0.408 3.592 15 O -0.441 6.441 16 C -0.097 4.097 17 C -0.088 4.088 18 C -0.120 4.120 19 C -0.148 4.148 20 C 0.049 3.951 21 F -0.122 7.122 22 C -0.107 4.107 23 C -0.151 4.151 24 H 0.079 0.921 25 H 0.048 0.952 26 H 0.107 0.893 27 H 0.101 0.899 28 H 0.040 0.960 29 H 0.100 0.900 30 H 0.106 0.894 31 H 0.068 0.932 32 H 0.142 0.858 33 H 0.186 0.814 34 H 0.186 0.814 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.034 8.803 7.101 11.310 hybrid contribution -0.435 -0.891 -1.022 1.424 sum -0.469 7.912 6.079 9.989 Atomic orbital electron populations 1.22833 0.80757 1.03122 1.00110 1.88005 1.20423 1.28415 1.95316 1.23182 0.95392 0.84665 0.99638 1.21402 0.91871 0.98695 0.87765 1.42571 1.71230 1.04796 1.09267 1.19421 1.24045 0.81429 1.15043 0.89638 1.25730 0.94982 1.02546 0.99415 1.69495 1.25558 1.38729 1.21407 0.85322 0.76597 0.80334 0.78133 1.21875 1.21857 1.18480 1.17792 0.81054 0.77741 0.82646 1.90462 1.50992 1.66956 1.35717 1.20214 0.98341 0.94251 0.96927 1.21415 0.92987 0.97998 0.96374 1.21274 0.98354 0.92900 0.99456 1.21496 0.98139 1.00304 0.94817 1.17473 0.97418 0.86739 0.93465 1.91427 1.96452 1.54669 1.69633 1.20171 0.97374 0.94742 0.98434 1.20584 0.96501 1.01254 0.96806 0.92110 0.95210 0.89319 0.89923 0.95998 0.90024 0.89421 0.93162 0.85758 0.81382 0.81404 0.92606 0.91910 0.90537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 11.01 113.37 1.25 2.05 16 2 O -0.40 -15.43 10.02 -148.98 -1.49 -16.92 16 3 C 0.05 1.70 6.28 71.98 0.45 2.15 16 4 C 0.13 4.73 5.75 86.38 0.50 5.23 16 5 N -0.55 -26.88 1.95 -638.93 -1.25 -28.13 16 6 C -0.27 -14.63 9.14 84.10 0.77 -13.86 16 7 H 0.09 4.55 7.70 -2.91 -0.02 4.53 16 8 C -0.03 -1.59 5.12 84.96 0.43 -1.16 16 9 N -0.91 -52.55 11.10 21.68 0.24 -52.31 16 10 Si 0.97 45.84 29.59 68.60 2.03 47.87 16 11 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 12 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 13 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 14 C 0.61 31.51 3.60 86.75 0.31 31.82 16 15 O -0.56 -32.96 14.39 -4.02 -0.06 -33.01 16 16 C -0.09 -4.09 5.18 -20.10 -0.10 -4.20 16 17 C -0.07 -2.60 9.00 22.54 0.20 -2.39 16 18 C -0.10 -2.90 10.03 22.23 0.22 -2.68 16 19 C -0.13 -3.55 10.02 22.38 0.22 -3.32 16 20 C 0.07 2.32 7.23 22.34 0.16 2.48 16 21 F -0.14 -4.63 16.38 44.97 0.74 -3.89 16 22 C -0.11 -4.26 5.92 -19.55 -0.12 -4.38 16 23 C -0.10 -3.81 8.48 71.24 0.60 -3.20 16 24 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 27 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.08 2.88 8.04 -2.39 -0.02 2.86 16 30 H 0.09 2.84 7.34 -2.39 -0.02 2.82 16 31 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 32 H 0.12 4.97 7.73 -2.91 -0.02 4.95 16 33 H 0.17 3.38 8.06 -2.91 -0.02 3.36 16 34 H 0.17 3.27 8.06 -2.91 -0.02 3.25 16 35 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 36 H 0.06 2.72 6.32 -2.39 -0.02 2.70 16 37 H 0.08 2.56 7.48 -2.39 -0.02 2.54 16 Total: -1.00 -70.47 319.39 6.19 -64.28 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: 1.07 Total: 13.56 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: 4.91 Total: 8.54 kcal Atomic # 7 Polarization: -79.43 SS G_CDS: -1.01 Total: -80.43 kcal Atomic # 8 Polarization: -48.38 SS G_CDS: -1.55 Total: -49.93 kcal Atomic # 9 Polarization: -4.63 SS G_CDS: 0.74 Total: -3.89 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -70.47 6.19 -64.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399597214.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.097 kcal (2) G-P(sol) polarization free energy of solvation -70.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds