Wall clock time and date at job start Tue Mar 31 2020 05:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33383 * 125.20368 * 2 1 4 4 C 1.38425 * 114.92174 * 179.97438 * 3 2 1 5 5 C 1.50704 * 122.54253 * 179.73216 * 4 3 2 6 6 C 1.52998 * 109.47097 * 265.02544 * 5 4 3 7 7 C 1.53002 * 109.46910 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.46736 * 179.97438 * 7 6 5 9 9 O 1.21275 * 120.00073 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99481 * 179.97438 * 8 7 6 11 11 C 1.46508 * 119.99698 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47110 * 180.02562 * 11 10 8 13 13 H 1.08005 * 120.00051 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00117 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00029 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99884 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47242 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47027 * 120.00224 * 16 14 12 19 19 H 1.48500 * 109.46742 * 239.99718 * 16 14 12 20 20 C 1.33390 * 114.92123 * 359.97438 * 4 3 2 21 21 C 1.50699 * 125.20296 * 179.97438 * 20 4 3 22 22 S 1.75887 * 125.19993 * 179.97438 * 2 1 3 23 23 H 1.08999 * 109.47125 * 89.99462 * 1 2 3 24 24 H 1.08998 * 109.47162 * 209.99957 * 1 2 3 25 25 H 1.09004 * 109.46782 * 329.99301 * 1 2 3 26 26 H 1.08001 * 122.54319 * 359.97438 * 3 2 1 27 27 H 1.09004 * 109.46788 * 25.02291 * 5 4 3 28 28 H 1.09003 * 109.47150 * 145.02136 * 5 4 3 29 29 H 1.08998 * 109.47058 * 300.00022 * 6 5 4 30 30 H 1.08997 * 109.47033 * 59.99916 * 6 5 4 31 31 H 1.08991 * 109.47299 * 300.00234 * 7 6 5 32 32 H 1.08997 * 109.46981 * 60.00325 * 7 6 5 33 33 H 0.96997 * 120.00490 * 0.02562 * 10 8 7 34 34 H 1.09004 * 109.47170 * 300.00217 * 11 10 8 35 35 H 1.08997 * 109.46915 * 60.00548 * 11 10 8 36 36 H 0.96993 * 120.00512 * 179.97438 * 15 14 12 37 37 H 1.09007 * 109.47039 * 90.00840 * 21 20 4 38 38 H 1.08998 * 109.47062 * 210.00206 * 21 20 4 39 39 H 1.08994 * 109.47215 * 330.00270 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8428 0.0006 5 6 4.6624 1.9481 -0.0053 6 6 5.1001 2.2302 -1.4439 7 6 6.1397 3.3528 -1.4499 8 6 6.5713 3.6301 -2.8669 9 8 6.0941 2.9930 -3.7818 10 7 7.4869 4.5869 -3.1173 11 6 7.9061 4.8569 -4.4949 12 6 8.9301 5.9625 -4.5008 13 1 9.2382 6.4182 -3.5713 14 6 9.4737 6.3924 -5.6928 15 7 9.0989 5.8372 -6.8245 16 14 10.7435 7.7624 -5.6999 17 1 10.9917 8.2146 -4.3075 18 1 12.0099 7.2604 -6.2910 19 1 10.2379 8.9016 -6.5072 20 6 3.9751 -0.4478 0.0016 21 6 5.3861 -0.9771 0.0018 22 16 2.5209 -1.4373 0.0006 23 1 -0.3633 0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5140 26 1 1.8670 2.0895 -0.0004 27 1 4.2265 2.8497 0.4252 28 1 5.5273 1.6451 0.5849 29 1 5.5359 1.3286 -1.8745 30 1 4.2353 2.5332 -2.0340 31 1 5.7036 4.2541 -1.0195 32 1 7.0046 3.0501 -0.8597 33 1 7.8683 5.0967 -2.3856 34 1 8.3426 3.9555 -4.9252 35 1 7.0411 5.1592 -5.0852 36 1 9.4810 6.1398 -7.6631 37 1 5.7264 -1.1040 1.0296 38 1 5.4136 -1.9384 -0.5113 39 1 6.0388 -0.2719 -0.5126 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427631972.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:35 Heat of formation + Delta-G solvation = -43.138916 kcal Electronic energy + Delta-G solvation = -18666.926380 eV Core-core repulsion = 15699.734214 eV Total energy + Delta-G solvation = -2967.192166 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.16217 -38.54052 -34.60960 -34.05710 -32.72574 -32.26679 -29.82497 -28.41230 -26.75496 -24.54001 -23.23221 -21.96315 -20.94768 -19.54227 -18.38908 -17.22805 -16.98031 -15.62479 -15.44419 -15.19683 -14.88216 -14.45993 -14.14212 -13.97797 -13.54686 -13.38080 -13.15236 -12.92983 -12.84922 -12.36948 -12.20661 -11.96282 -11.82018 -11.73924 -11.39366 -11.29155 -11.17281 -10.93151 -10.89503 -10.69657 -10.50812 -10.30875 -9.36882 -8.98782 -8.72969 -8.54142 -8.35056 -7.84738 -6.16112 -4.22911 0.87761 1.48825 1.86853 2.58959 3.23495 3.30502 3.33662 3.44124 4.14102 4.38785 4.60475 4.74256 4.99491 5.01452 5.10634 5.19594 5.20466 5.26291 5.29641 5.39180 5.45191 5.52419 5.57601 5.63865 5.75855 5.77297 5.84018 5.95958 6.06004 6.17779 6.38626 6.49583 6.54238 7.33327 7.47975 7.53714 7.68539 7.98452 8.66732 8.80100 9.15440 9.44080 10.94234 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.039979 B = 0.002512 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.198841 B =11143.217547 C =11274.849334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.184 4.184 3 C -0.128 4.128 4 C -0.097 4.097 5 C -0.061 4.061 6 C -0.095 4.095 7 C -0.141 4.141 8 C 0.495 3.505 9 O -0.558 6.558 10 N -0.715 5.715 11 C 0.248 3.752 12 C -0.542 4.542 13 H 0.063 0.937 14 C 0.062 3.938 15 N -0.886 5.886 16 Si 0.904 3.096 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.282 1.282 20 C -0.176 4.176 21 C -0.085 4.085 22 S 0.078 5.922 23 H 0.074 0.926 24 H 0.066 0.934 25 H 0.075 0.925 26 H 0.138 0.862 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.390 0.610 34 H 0.026 0.974 35 H 0.026 0.974 36 H 0.265 0.735 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.766 -11.501 18.156 24.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.301 4.301 3 C -0.158 4.158 4 C -0.109 4.109 5 C -0.100 4.100 6 C -0.134 4.134 7 C -0.182 4.182 8 C 0.280 3.720 9 O -0.438 6.438 10 N -0.364 5.364 11 C 0.127 3.873 12 C -0.580 4.580 13 H 0.081 0.919 14 C -0.141 4.141 15 N -0.523 5.523 16 Si 0.731 3.269 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.293 4.293 21 C -0.143 4.143 22 S 0.343 5.657 23 H 0.092 0.908 24 H 0.085 0.915 25 H 0.094 0.906 26 H 0.156 0.844 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.223 0.777 34 H 0.044 0.956 35 H 0.044 0.956 36 H 0.075 0.925 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.362 -13.519 17.267 25.680 hybrid contribution 1.137 2.518 0.153 2.767 sum -12.225 -11.001 17.421 23.957 Atomic orbital electron populations 1.20313 0.87976 1.02891 1.02735 1.24341 0.99731 0.95606 1.10422 1.19972 0.92444 0.99240 1.04140 1.18783 0.94594 0.94050 1.03460 1.20375 0.96369 0.95555 0.97735 1.21265 0.98695 0.98386 0.95004 1.21692 1.00389 1.00519 0.95566 1.20555 0.80041 0.80639 0.90764 1.90655 1.56195 1.50002 1.46908 1.46492 1.41386 1.36381 1.12094 1.19092 0.95062 0.96314 0.76788 1.21276 1.23921 1.19334 0.93507 0.91864 1.24967 0.96915 0.96983 0.95252 1.69984 1.42853 1.41589 0.97909 0.86361 0.80917 0.81439 0.78194 1.19635 1.20796 1.20801 1.24217 0.98799 0.95785 1.10533 1.20371 0.89957 1.01466 1.02513 1.84114 0.96974 1.09907 1.74730 0.90779 0.91542 0.90620 0.84444 0.90981 0.90980 0.91159 0.91148 0.89495 0.89531 0.77745 0.95637 0.95636 0.92510 0.90918 0.91435 0.89956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.38 36.01 0.37 -0.22 16 2 C -0.18 -1.88 6.51 -36.00 -0.23 -2.12 16 3 C -0.13 -1.39 9.83 -41.21 -0.41 -1.79 16 4 C -0.10 -1.10 5.06 -106.25 -0.54 -1.64 16 5 C -0.06 -0.63 4.84 -27.88 -0.14 -0.76 16 6 C -0.10 -1.26 4.43 -26.73 -0.12 -1.38 16 7 C -0.14 -1.91 5.70 -27.88 -0.16 -2.07 16 8 C 0.49 9.86 7.83 -10.98 -0.09 9.77 16 9 O -0.56 -13.61 15.98 5.56 0.09 -13.52 16 10 N -0.72 -15.15 5.55 -61.47 -0.34 -15.49 16 11 C 0.25 6.67 5.43 -5.19 -0.03 6.65 16 12 C -0.54 -14.83 9.28 -34.44 -0.32 -15.15 16 13 H 0.06 1.62 7.60 -52.48 -0.40 1.22 16 14 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 15 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 16 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 17 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 C -0.18 -1.95 6.51 -36.00 -0.23 -2.19 16 21 C -0.08 -0.78 9.79 36.01 0.35 -0.43 16 22 S 0.08 0.81 23.31 -107.50 -2.51 -1.70 16 23 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 27 H 0.07 0.66 8.11 -51.93 -0.42 0.24 16 28 H 0.07 0.66 7.52 -51.93 -0.39 0.27 16 29 H 0.07 1.03 7.24 -51.93 -0.38 0.65 16 30 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 31 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.39 7.01 8.32 -40.82 -0.34 6.67 16 34 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 0.79 6.50 -51.93 -0.34 0.45 16 LS Contribution 343.05 15.07 5.17 5.17 Total: -1.00 -32.94 343.05 -9.55 -42.48 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -6.05 Total: 2.43 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: -1.63 Total: -9.68 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: 0.40 Total: -41.10 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: 0.09 Total: -13.52 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 0.81 SS G_CDS: -2.51 Total: -1.70 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.94 -9.55 -42.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427631972.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.655 kcal (2) G-P(sol) polarization free energy of solvation -32.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds