Wall clock time and date at job start Tue Mar 31 2020 05:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33383 * 125.20368 * 2 1 4 4 C 1.38425 * 114.92174 * 179.97438 * 3 2 1 5 5 C 1.50704 * 122.54253 * 179.73216 * 4 3 2 6 6 C 1.52998 * 109.47097 * 265.02544 * 5 4 3 7 7 C 1.53002 * 109.46910 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.46736 * 179.97438 * 7 6 5 9 9 O 1.21275 * 120.00073 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99481 * 179.97438 * 8 7 6 11 11 C 1.46508 * 119.99698 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47110 * 180.02562 * 11 10 8 13 13 H 1.08005 * 120.00051 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00117 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00029 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99884 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47242 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47027 * 120.00224 * 16 14 12 19 19 H 1.48500 * 109.46742 * 239.99718 * 16 14 12 20 20 C 1.33390 * 114.92123 * 359.97438 * 4 3 2 21 21 C 1.50699 * 125.20296 * 179.97438 * 20 4 3 22 22 S 1.75887 * 125.19993 * 179.97438 * 2 1 3 23 23 H 1.08999 * 109.47125 * 89.99462 * 1 2 3 24 24 H 1.08998 * 109.47162 * 209.99957 * 1 2 3 25 25 H 1.09004 * 109.46782 * 329.99301 * 1 2 3 26 26 H 1.08001 * 122.54319 * 359.97438 * 3 2 1 27 27 H 1.09004 * 109.46788 * 25.02291 * 5 4 3 28 28 H 1.09003 * 109.47150 * 145.02136 * 5 4 3 29 29 H 1.08998 * 109.47058 * 300.00022 * 6 5 4 30 30 H 1.08997 * 109.47033 * 59.99916 * 6 5 4 31 31 H 1.08991 * 109.47299 * 300.00234 * 7 6 5 32 32 H 1.08997 * 109.46981 * 60.00325 * 7 6 5 33 33 H 0.96997 * 120.00490 * 0.02562 * 10 8 7 34 34 H 1.09004 * 109.47170 * 300.00217 * 11 10 8 35 35 H 1.08997 * 109.46915 * 60.00548 * 11 10 8 36 36 H 0.96993 * 120.00512 * 179.97438 * 15 14 12 37 37 H 1.09007 * 109.47039 * 90.00840 * 21 20 4 38 38 H 1.08998 * 109.47062 * 210.00206 * 21 20 4 39 39 H 1.08994 * 109.47215 * 330.00270 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8428 0.0006 5 6 4.6624 1.9481 -0.0053 6 6 5.1001 2.2302 -1.4439 7 6 6.1397 3.3528 -1.4499 8 6 6.5713 3.6301 -2.8669 9 8 6.0941 2.9930 -3.7818 10 7 7.4869 4.5869 -3.1173 11 6 7.9061 4.8569 -4.4949 12 6 8.9301 5.9625 -4.5008 13 1 9.2382 6.4182 -3.5713 14 6 9.4737 6.3924 -5.6928 15 7 9.0989 5.8372 -6.8245 16 14 10.7435 7.7624 -5.6999 17 1 10.9917 8.2146 -4.3075 18 1 12.0099 7.2604 -6.2910 19 1 10.2379 8.9016 -6.5072 20 6 3.9751 -0.4478 0.0016 21 6 5.3861 -0.9771 0.0018 22 16 2.5209 -1.4373 0.0006 23 1 -0.3633 0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5140 26 1 1.8670 2.0895 -0.0004 27 1 4.2265 2.8497 0.4252 28 1 5.5273 1.6451 0.5849 29 1 5.5359 1.3286 -1.8745 30 1 4.2353 2.5332 -2.0340 31 1 5.7036 4.2541 -1.0195 32 1 7.0046 3.0501 -0.8597 33 1 7.8683 5.0967 -2.3856 34 1 8.3426 3.9555 -4.9252 35 1 7.0411 5.1592 -5.0852 36 1 9.4810 6.1398 -7.6631 37 1 5.7264 -1.1040 1.0296 38 1 5.4136 -1.9384 -0.5113 39 1 6.0388 -0.2719 -0.5126 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427631972.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:35 Heat of formation + Delta-G solvation = -63.485402 kcal Electronic energy + Delta-G solvation = -18667.808670 eV Core-core repulsion = 15699.734214 eV Total energy + Delta-G solvation = -2968.074456 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.58145 -39.61003 -36.20942 -35.37913 -34.34026 -33.57659 -30.64932 -29.81894 -28.30067 -25.45282 -24.78394 -23.33878 -21.87724 -21.19893 -19.29604 -18.75688 -18.01324 -17.39343 -17.02241 -16.72421 -16.11933 -15.65136 -15.28466 -15.21788 -14.60957 -14.25886 -14.19996 -14.07385 -13.94832 -13.73425 -13.64422 -13.23444 -12.92339 -12.86401 -12.75007 -12.62745 -12.43109 -12.21942 -12.12329 -12.00322 -11.60857 -11.45843 -11.43427 -10.81967 -10.70896 -9.80504 -9.33386 -9.15559 -8.29665 -6.46427 0.08457 0.71328 1.07649 1.43080 1.44356 1.57968 1.77171 1.83094 2.33595 2.67377 3.05242 3.84824 3.91615 3.99677 4.12623 4.18916 4.37727 4.42577 4.57366 4.66641 4.71946 4.72503 4.75652 4.76746 4.86758 4.93873 5.05285 5.12964 5.15199 5.17200 5.24238 5.29489 5.45199 5.51201 5.59914 5.71464 5.73055 5.85485 6.65797 6.95338 7.23569 7.55249 8.82976 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.039979 B = 0.002512 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.198841 B =11143.217547 C =11274.849334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.189 4.189 3 C -0.145 4.145 4 C -0.113 4.113 5 C -0.050 4.050 6 C -0.089 4.089 7 C -0.124 4.124 8 C 0.489 3.511 9 O -0.610 6.610 10 N -0.710 5.710 11 C 0.264 3.736 12 C -0.554 4.554 13 H 0.085 0.915 14 C 0.001 3.999 15 N -0.933 5.933 16 Si 0.986 3.014 17 H -0.251 1.251 18 H -0.279 1.279 19 H -0.279 1.279 20 C -0.191 4.191 21 C -0.085 4.085 22 S 0.070 5.930 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.089 0.911 26 H 0.149 0.851 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.049 0.951 30 H 0.045 0.955 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.410 0.590 34 H -0.015 1.015 35 H -0.016 1.016 36 H 0.268 0.732 37 H 0.089 0.911 38 H 0.068 0.932 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.207 -10.287 20.818 26.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.306 4.306 3 C -0.175 4.175 4 C -0.124 4.124 5 C -0.089 4.089 6 C -0.127 4.127 7 C -0.164 4.164 8 C 0.277 3.723 9 O -0.492 6.492 10 N -0.360 5.360 11 C 0.141 3.859 12 C -0.592 4.592 13 H 0.103 0.897 14 C -0.199 4.199 15 N -0.572 5.572 16 Si 0.809 3.191 17 H -0.175 1.175 18 H -0.205 1.205 19 H -0.205 1.205 20 C -0.308 4.308 21 C -0.143 4.143 22 S 0.335 5.665 23 H 0.096 0.904 24 H 0.094 0.906 25 H 0.108 0.892 26 H 0.167 0.833 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.139 0.861 32 H 0.140 0.860 33 H 0.246 0.754 34 H 0.002 0.998 35 H 0.002 0.998 36 H 0.077 0.923 37 H 0.108 0.892 38 H 0.087 0.913 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.808 -12.302 19.993 26.742 hybrid contribution 0.881 2.054 -0.702 2.342 sum -11.927 -10.249 19.291 24.888 Atomic orbital electron populations 1.20413 0.86182 1.04078 1.03299 1.24744 1.01069 0.95199 1.09587 1.20210 0.92564 1.00029 1.04703 1.19007 0.95136 0.94437 1.03850 1.20302 0.96907 0.96130 0.95588 1.21171 0.97529 0.97313 0.96724 1.21706 1.01789 1.02068 0.90791 1.21794 0.78440 0.78904 0.93166 1.90635 1.57650 1.51558 1.49399 1.46252 1.42055 1.37352 1.10334 1.18525 0.93386 0.94651 0.79353 1.21667 1.23714 1.19211 0.94580 0.89653 1.26113 0.99263 0.99820 0.94661 1.70149 1.44558 1.43586 0.98885 0.85087 0.77379 0.77430 0.79169 1.17457 1.20475 1.20491 1.24530 0.99644 0.96070 1.10555 1.20420 0.89025 1.01337 1.03538 1.84092 0.97220 1.10404 1.74777 0.90430 0.90555 0.89243 0.83334 0.89173 0.89206 0.93234 0.93574 0.86147 0.86037 0.75442 0.99754 0.99794 0.92273 0.89247 0.91267 0.90349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.09 10.38 71.24 0.74 -0.35 16 2 C -0.19 -3.68 6.51 24.59 0.16 -3.52 16 3 C -0.15 -2.99 9.83 21.22 0.21 -2.78 16 4 C -0.11 -2.41 5.06 -20.92 -0.11 -2.52 16 5 C -0.05 -0.91 4.84 29.85 0.14 -0.76 16 6 C -0.09 -2.25 4.43 30.59 0.14 -2.12 16 7 C -0.12 -3.03 5.70 29.85 0.17 -2.86 16 8 C 0.49 19.43 7.83 87.66 0.69 20.11 16 9 O -0.61 -30.93 15.98 -3.02 -0.05 -30.98 16 10 N -0.71 -29.97 5.55 -466.77 -2.59 -32.56 16 11 C 0.26 14.72 5.43 85.63 0.46 15.19 16 12 C -0.55 -30.31 9.28 25.60 0.24 -30.07 16 13 H 0.09 4.19 7.60 -2.91 -0.02 4.17 16 14 C 0.00 0.04 5.46 84.66 0.46 0.50 16 15 N -0.93 -56.95 13.29 21.45 0.28 -56.66 16 16 Si 0.99 42.40 29.54 68.60 2.03 44.43 16 17 H -0.25 -9.89 7.11 99.48 0.71 -9.19 16 18 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 19 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 20 C -0.19 -4.07 6.51 24.59 0.16 -3.91 16 21 C -0.08 -1.48 9.79 71.24 0.70 -0.78 16 22 S 0.07 1.42 23.31 -56.49 -1.32 0.10 16 23 H 0.08 0.99 8.14 -2.39 -0.02 0.98 16 24 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 27 H 0.09 1.34 8.11 -2.39 -0.02 1.32 16 28 H 0.09 1.34 7.52 -2.39 -0.02 1.32 16 29 H 0.05 1.45 7.24 -2.39 -0.02 1.43 16 30 H 0.05 1.38 8.10 -2.39 -0.02 1.36 16 31 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.41 13.92 8.32 -92.71 -0.77 13.15 16 34 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 35 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 36 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 37 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 38 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.08 1.42 6.50 -2.39 -0.02 1.41 16 Total: -1.00 -75.00 343.05 2.79 -72.22 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: 0.27 Total: 17.33 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: 4.16 Total: -13.87 kcal Atomic # 7 Polarization: -86.92 SS G_CDS: -2.30 Total: -89.22 kcal Atomic # 8 Polarization: -30.93 SS G_CDS: -0.05 Total: -30.98 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Atomic # 16 Polarization: 1.42 SS G_CDS: -1.32 Total: 0.10 kcal Total: -75.00 2.79 -72.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427631972.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.731 kcal (2) G-P(sol) polarization free energy of solvation -75.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds