Wall clock time and date at job start Tue Mar 31 2020 05:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38423 * 122.53965 * 2 1 4 4 C 1.33390 * 114.92029 * 180.02562 * 3 2 1 5 5 S 1.75881 * 109.59623 * 0.02562 * 4 3 2 6 6 C 1.33393 * 122.53917 * 180.02562 * 2 1 3 7 7 C 1.50699 * 125.20424 * 0.24131 * 6 2 1 8 8 C 1.53009 * 109.46676 * 89.71960 * 7 6 2 9 9 C 1.53001 * 109.46920 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.47095 * 179.97438 * 9 8 7 11 11 O 1.21282 * 119.99680 * 0.02562 * 10 9 8 12 12 N 1.34773 * 119.99970 * 180.02562 * 10 9 8 13 13 C 1.46502 * 120.00042 * 180.02562 * 12 10 9 14 14 H 1.08993 * 109.46938 * 34.99443 * 13 12 10 15 15 C 1.53000 * 109.46735 * 275.00019 * 13 12 10 16 16 C 1.50693 * 109.47397 * 154.99773 * 13 12 10 17 17 H 1.08004 * 120.00031 * 35.00162 * 16 13 12 18 18 C 1.37875 * 120.00263 * 214.99894 * 16 13 12 19 19 N 1.31518 * 120.00472 * 184.91116 * 18 16 13 20 20 Si 1.86800 * 119.99819 * 4.91807 * 18 16 13 21 21 H 1.48499 * 109.47185 * 84.82798 * 20 18 16 22 22 H 1.48497 * 109.47134 * 204.83241 * 20 18 16 23 23 H 1.48505 * 109.46924 * 324.83336 * 20 18 16 24 24 H 1.08997 * 109.47179 * 269.97496 * 1 2 3 25 25 H 1.08995 * 109.46845 * 29.97787 * 1 2 3 26 26 H 1.09003 * 109.46722 * 149.97695 * 1 2 3 27 27 H 1.07995 * 122.53939 * 0.04728 * 3 2 1 28 28 H 1.08001 * 125.20055 * 179.97438 * 4 3 2 29 29 H 1.08996 * 109.47375 * 209.71594 * 7 6 2 30 30 H 1.08998 * 109.47260 * 329.72322 * 7 6 2 31 31 H 1.08996 * 109.46919 * 299.99913 * 8 7 6 32 32 H 1.08998 * 109.46981 * 60.00190 * 8 7 6 33 33 H 1.09001 * 109.47165 * 300.00191 * 9 8 7 34 34 H 1.09003 * 109.47058 * 59.99804 * 9 8 7 35 35 H 0.97003 * 120.00098 * 359.97438 * 12 10 9 36 36 H 1.09001 * 109.47577 * 55.02880 * 15 13 12 37 37 H 1.08994 * 109.47051 * 175.04173 * 15 13 12 38 38 H 1.09011 * 109.46822 * 295.03618 * 15 13 12 39 39 H 0.96994 * 120.00090 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2516 1.1669 0.0000 4 6 3.5737 0.9901 -0.0005 5 16 3.9387 -0.7305 -0.0018 6 6 2.2245 -1.1245 -0.0005 7 6 1.6538 -2.5192 -0.0063 8 6 1.4592 -2.9846 -1.4509 9 6 0.8791 -4.4003 -1.4568 10 6 0.6869 -4.8585 -2.8796 11 8 0.9850 -4.1250 -3.7983 12 7 0.1838 -6.0832 -3.1311 13 6 -0.0026 -6.5288 -4.5142 14 1 0.7975 -6.1275 -5.1360 15 6 -1.3520 -6.0285 -5.0336 16 6 0.0285 -8.0345 -4.5654 17 1 -0.3823 -8.6112 -3.7498 18 6 0.5814 -8.6761 -5.6534 19 7 0.5224 -9.9868 -5.7439 20 14 1.4144 -7.6835 -6.9989 21 1 2.8239 -7.4155 -6.6158 22 1 1.3841 -8.4501 -8.2703 23 1 0.6973 -6.3957 -7.1800 24 1 -0.3633 -0.0004 1.0276 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 1.7965 2.1463 0.0008 28 1 4.3078 1.7822 -0.0010 29 1 2.3403 -3.1949 0.5037 30 1 0.6930 -2.5208 0.5084 31 1 0.7727 -2.3089 -1.9609 32 1 2.4200 -2.9830 -1.9656 33 1 1.5653 -5.0763 -0.9466 34 1 -0.0817 -4.4015 -0.9422 35 1 -0.0543 -6.6700 -2.3962 36 1 -1.4087 -4.9465 -4.9146 37 1 -1.4525 -6.2839 -6.0885 38 1 -2.1562 -6.4989 -4.4677 39 1 0.9117 -10.4381 -6.5092 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000438827616.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:57 Heat of formation + Delta-G solvation = -35.170894 kcal Electronic energy + Delta-G solvation = -19102.633750 eV Core-core repulsion = 16135.787104 eV Total energy + Delta-G solvation = -2966.846647 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.15762 -38.59276 -35.21097 -34.41727 -32.35104 -31.21233 -29.98527 -28.75060 -25.75249 -25.27611 -23.08937 -21.94651 -20.50609 -19.50776 -18.52007 -17.61460 -17.05343 -15.88067 -15.67846 -15.36706 -15.22850 -14.21653 -14.06534 -14.00734 -13.30012 -13.11069 -12.95939 -12.65410 -12.51418 -12.31916 -12.27474 -12.02649 -11.74819 -11.66708 -11.31899 -11.28552 -11.07674 -10.85781 -10.79679 -10.58719 -10.55894 -9.87486 -9.19710 -9.09988 -8.71381 -8.67346 -8.44861 -8.05253 -6.23427 -4.26988 0.86701 1.51944 1.88399 2.54438 3.26184 3.34098 3.35116 3.42168 4.03220 4.32993 4.61794 4.76768 4.92226 5.06771 5.15042 5.21324 5.23528 5.29773 5.43090 5.47938 5.52891 5.64839 5.68267 5.79101 5.86214 5.91888 6.17482 6.28900 6.35538 6.37930 6.45783 6.53691 6.69403 6.95873 7.20570 7.39951 7.58529 8.15526 8.60374 8.77439 9.03712 9.39159 10.88391 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.030230 B = 0.003148 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.006033 B = 8891.520174 C = 9160.159643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.113 4.113 3 C -0.128 4.128 4 C -0.220 4.220 5 S 0.092 5.908 6 C -0.166 4.166 7 C -0.051 4.051 8 C -0.096 4.096 9 C -0.142 4.142 10 C 0.498 3.502 11 O -0.561 6.561 12 N -0.706 5.706 13 C 0.230 3.770 14 H 0.049 0.951 15 C -0.147 4.147 16 C -0.530 4.530 17 H 0.078 0.922 18 C 0.080 3.920 19 N -0.890 5.890 20 Si 0.875 3.125 21 H -0.273 1.273 22 H -0.286 1.286 23 H -0.261 1.261 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.137 0.863 28 H 0.161 0.839 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.393 0.607 36 H 0.028 0.972 37 H 0.051 0.949 38 H 0.046 0.954 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.364 18.887 14.596 23.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.159 4.159 4 C -0.355 4.355 5 S 0.357 5.643 6 C -0.283 4.283 7 C -0.090 4.090 8 C -0.135 4.135 9 C -0.183 4.183 10 C 0.284 3.716 11 O -0.441 6.441 12 N -0.354 5.354 13 C 0.127 3.873 14 H 0.067 0.933 15 C -0.206 4.206 16 C -0.568 4.568 17 H 0.096 0.904 18 C -0.124 4.124 19 N -0.526 5.526 20 Si 0.701 3.299 21 H -0.199 1.199 22 H -0.212 1.212 23 H -0.185 1.185 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.155 0.845 28 H 0.179 0.821 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.226 0.774 36 H 0.047 0.953 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.996 18.377 13.796 23.324 hybrid contribution -0.800 0.959 -0.415 1.316 sum 3.195 19.337 13.381 23.731 Atomic orbital electron populations 1.20527 0.89805 1.03020 1.02048 1.18847 0.97477 0.91585 1.04584 1.20040 0.92881 0.99218 1.03717 1.25516 0.99722 0.99028 1.11275 1.84329 1.06275 1.00493 1.73216 1.24339 0.95439 0.99216 1.09347 1.20225 1.00940 0.89617 0.98209 1.21310 1.02631 0.95012 0.94539 1.21695 1.02921 0.98019 0.95621 1.20593 0.77762 0.82427 0.90858 1.90643 1.52015 1.54594 1.46841 1.46647 1.62881 1.15056 1.10862 1.19103 0.93885 0.95009 0.79262 0.93316 1.22213 0.99619 0.97957 1.00792 1.21025 1.40565 0.88414 1.06839 0.90360 1.24947 0.94815 0.94798 0.97825 1.69883 1.44321 1.07821 1.30612 0.86887 0.80887 0.80732 0.81355 1.19863 1.21181 1.18500 0.91431 0.91622 0.91128 0.84543 0.82127 0.90717 0.89859 0.90911 0.91041 0.89247 0.89350 0.77389 0.95269 0.93000 0.93466 0.92249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.81 9.60 36.01 0.35 -0.46 16 2 C -0.11 -1.18 5.80 -106.25 -0.62 -1.80 16 3 C -0.13 -1.24 9.98 -41.21 -0.41 -1.65 16 4 C -0.22 -2.08 11.23 29.04 0.33 -1.76 16 5 S 0.09 0.96 23.33 -107.50 -2.51 -1.54 16 6 C -0.17 -1.82 5.76 -36.00 -0.21 -2.03 16 7 C -0.05 -0.51 5.07 -27.88 -0.14 -0.65 16 8 C -0.10 -1.23 4.49 -26.73 -0.12 -1.35 16 9 C -0.14 -1.84 5.70 -27.88 -0.16 -2.00 16 10 C 0.50 9.38 7.79 -10.99 -0.09 9.29 16 11 O -0.56 -12.82 15.65 5.56 0.09 -12.73 16 12 N -0.71 -14.09 5.07 -54.94 -0.28 -14.37 16 13 C 0.23 5.52 2.22 -69.08 -0.15 5.36 16 14 H 0.05 1.28 4.73 -51.93 -0.25 1.04 16 15 C -0.15 -3.26 9.47 37.16 0.35 -2.90 16 16 C -0.53 -14.32 9.05 -34.44 -0.31 -14.63 16 17 H 0.08 2.21 8.06 -52.48 -0.42 1.79 16 18 C 0.08 2.26 5.47 -17.82 -0.10 2.17 16 19 N -0.89 -26.30 13.96 55.43 0.77 -25.53 16 20 Si 0.87 21.80 26.99 -169.99 -4.59 17.21 16 21 H -0.27 -6.83 7.11 56.52 0.40 -6.42 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.26 -6.43 6.82 56.52 0.39 -6.04 16 24 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 26 H 0.07 0.62 6.96 -51.93 -0.36 0.26 16 27 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 28 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.08 0.71 7.32 -51.93 -0.38 0.33 16 31 H 0.07 1.01 7.81 -51.93 -0.41 0.60 16 32 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 33 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.39 6.81 8.59 -40.82 -0.35 6.46 16 36 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.05 0.98 8.14 -51.92 -0.42 0.55 16 39 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 338.76 15.07 5.11 5.11 Total: -1.00 -32.09 338.76 -8.65 -40.74 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -5.97 Total: 3.50 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: -1.28 Total: -12.39 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: 0.50 Total: -39.90 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: 0.09 Total: -12.73 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.59 Total: 17.21 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -2.51 Total: -1.54 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.09 -8.65 -40.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438827616.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.573 kcal (2) G-P(sol) polarization free energy of solvation -32.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds