Wall clock time and date at job start Tue Mar 31 2020 05:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38423 * 122.53965 * 2 1 4 4 C 1.33390 * 114.92029 * 180.02562 * 3 2 1 5 5 S 1.75881 * 109.59623 * 0.02562 * 4 3 2 6 6 C 1.33393 * 122.53917 * 180.02562 * 2 1 3 7 7 C 1.50699 * 125.20424 * 0.24131 * 6 2 1 8 8 C 1.53009 * 109.46676 * 89.71960 * 7 6 2 9 9 C 1.53001 * 109.46920 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.47095 * 179.97438 * 9 8 7 11 11 O 1.21282 * 119.99680 * 0.02562 * 10 9 8 12 12 N 1.34773 * 119.99970 * 180.02562 * 10 9 8 13 13 C 1.46502 * 120.00042 * 180.02562 * 12 10 9 14 14 H 1.08993 * 109.46938 * 34.99443 * 13 12 10 15 15 C 1.53000 * 109.46735 * 275.00019 * 13 12 10 16 16 C 1.50693 * 109.47397 * 154.99773 * 13 12 10 17 17 H 1.08004 * 120.00031 * 35.00162 * 16 13 12 18 18 C 1.37875 * 120.00263 * 214.99894 * 16 13 12 19 19 N 1.31518 * 120.00472 * 184.91116 * 18 16 13 20 20 Si 1.86800 * 119.99819 * 4.91807 * 18 16 13 21 21 H 1.48499 * 109.47185 * 84.82798 * 20 18 16 22 22 H 1.48497 * 109.47134 * 204.83241 * 20 18 16 23 23 H 1.48505 * 109.46924 * 324.83336 * 20 18 16 24 24 H 1.08997 * 109.47179 * 269.97496 * 1 2 3 25 25 H 1.08995 * 109.46845 * 29.97787 * 1 2 3 26 26 H 1.09003 * 109.46722 * 149.97695 * 1 2 3 27 27 H 1.07995 * 122.53939 * 0.04728 * 3 2 1 28 28 H 1.08001 * 125.20055 * 179.97438 * 4 3 2 29 29 H 1.08996 * 109.47375 * 209.71594 * 7 6 2 30 30 H 1.08998 * 109.47260 * 329.72322 * 7 6 2 31 31 H 1.08996 * 109.46919 * 299.99913 * 8 7 6 32 32 H 1.08998 * 109.46981 * 60.00190 * 8 7 6 33 33 H 1.09001 * 109.47165 * 300.00191 * 9 8 7 34 34 H 1.09003 * 109.47058 * 59.99804 * 9 8 7 35 35 H 0.97003 * 120.00098 * 359.97438 * 12 10 9 36 36 H 1.09001 * 109.47577 * 55.02880 * 15 13 12 37 37 H 1.08994 * 109.47051 * 175.04173 * 15 13 12 38 38 H 1.09011 * 109.46822 * 295.03618 * 15 13 12 39 39 H 0.96994 * 120.00090 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2516 1.1669 0.0000 4 6 3.5737 0.9901 -0.0005 5 16 3.9387 -0.7305 -0.0018 6 6 2.2245 -1.1245 -0.0005 7 6 1.6538 -2.5192 -0.0063 8 6 1.4592 -2.9846 -1.4509 9 6 0.8791 -4.4003 -1.4568 10 6 0.6869 -4.8585 -2.8796 11 8 0.9850 -4.1250 -3.7983 12 7 0.1838 -6.0832 -3.1311 13 6 -0.0026 -6.5288 -4.5142 14 1 0.7975 -6.1275 -5.1360 15 6 -1.3520 -6.0285 -5.0336 16 6 0.0285 -8.0345 -4.5654 17 1 -0.3823 -8.6112 -3.7498 18 6 0.5814 -8.6761 -5.6534 19 7 0.5224 -9.9868 -5.7439 20 14 1.4144 -7.6835 -6.9989 21 1 2.8239 -7.4155 -6.6158 22 1 1.3841 -8.4501 -8.2703 23 1 0.6973 -6.3957 -7.1800 24 1 -0.3633 -0.0004 1.0276 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 1.7965 2.1463 0.0008 28 1 4.3078 1.7822 -0.0010 29 1 2.3403 -3.1949 0.5037 30 1 0.6930 -2.5208 0.5084 31 1 0.7727 -2.3089 -1.9609 32 1 2.4200 -2.9830 -1.9656 33 1 1.5653 -5.0763 -0.9466 34 1 -0.0817 -4.4015 -0.9422 35 1 -0.0543 -6.6700 -2.3962 36 1 -1.4087 -4.9465 -4.9146 37 1 -1.4525 -6.2839 -6.0885 38 1 -2.1562 -6.4989 -4.4677 39 1 0.9117 -10.4381 -6.5092 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000438827616.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:56 Heat of formation + Delta-G solvation = -54.719337 kcal Electronic energy + Delta-G solvation = -19103.481434 eV Core-core repulsion = 16135.787104 eV Total energy + Delta-G solvation = -2967.694331 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.63745 -39.41544 -36.83686 -35.58886 -34.36828 -32.30018 -31.35276 -29.74138 -27.34549 -26.62927 -24.02364 -23.01412 -22.00329 -21.14416 -19.39211 -19.13383 -18.18249 -17.42475 -17.21763 -16.67925 -16.11123 -15.82678 -15.19861 -14.98309 -14.82266 -14.52417 -14.31640 -13.98754 -13.86728 -13.41377 -13.19822 -13.11625 -13.00986 -12.84124 -12.74379 -12.54633 -12.45263 -12.39293 -12.16045 -11.89169 -11.71205 -11.44773 -11.23616 -10.87015 -10.65979 -9.76740 -9.46413 -9.21942 -8.40253 -6.45894 0.11178 0.77261 1.13881 1.27446 1.32086 1.42745 1.80905 1.85955 2.25663 2.54370 3.03765 3.78102 3.94731 4.06338 4.11307 4.28796 4.41827 4.45020 4.55381 4.65528 4.69995 4.73335 4.76224 4.80137 4.84374 4.88070 4.93031 5.12381 5.14565 5.15624 5.25574 5.36875 5.40658 5.45585 5.58183 5.71555 5.79118 6.13159 6.59519 6.96711 7.20798 7.54353 8.74832 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.030230 B = 0.003148 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.006033 B = 8891.520174 C = 9160.159643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.120 4.120 3 C -0.139 4.139 4 C -0.218 4.218 5 S 0.062 5.938 6 C -0.186 4.186 7 C -0.042 4.042 8 C -0.089 4.089 9 C -0.129 4.129 10 C 0.494 3.506 11 O -0.604 6.604 12 N -0.706 5.706 13 C 0.232 3.768 14 H 0.026 0.974 15 C -0.140 4.140 16 C -0.526 4.526 17 H 0.059 0.941 18 C 0.033 3.967 19 N -0.930 5.930 20 Si 0.926 3.074 21 H -0.276 1.276 22 H -0.276 1.276 23 H -0.259 1.259 24 H 0.082 0.918 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.157 0.843 28 H 0.182 0.818 29 H 0.084 0.916 30 H 0.104 0.896 31 H 0.057 0.943 32 H 0.045 0.955 33 H 0.113 0.887 34 H 0.124 0.876 35 H 0.407 0.593 36 H 0.036 0.964 37 H 0.044 0.956 38 H 0.059 0.941 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.905 20.470 15.964 26.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.132 4.132 3 C -0.170 4.170 4 C -0.353 4.353 5 S 0.327 5.673 6 C -0.303 4.303 7 C -0.081 4.081 8 C -0.128 4.128 9 C -0.168 4.168 10 C 0.282 3.718 11 O -0.487 6.487 12 N -0.356 5.356 13 C 0.128 3.872 14 H 0.044 0.956 15 C -0.199 4.199 16 C -0.564 4.564 17 H 0.077 0.923 18 C -0.167 4.167 19 N -0.569 5.569 20 Si 0.751 3.249 21 H -0.201 1.201 22 H -0.201 1.201 23 H -0.183 1.183 24 H 0.100 0.900 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.175 0.825 28 H 0.199 0.801 29 H 0.103 0.897 30 H 0.122 0.878 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.131 0.869 34 H 0.142 0.858 35 H 0.242 0.758 36 H 0.055 0.945 37 H 0.063 0.937 38 H 0.078 0.922 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.529 19.962 15.196 25.335 hybrid contribution -0.675 0.529 -0.778 1.158 sum 2.854 20.491 14.418 25.217 Atomic orbital electron populations 1.20580 0.88546 1.03229 1.03035 1.19210 0.98582 0.91704 1.03664 1.20348 0.93015 1.00026 1.03577 1.25828 1.00329 0.98644 1.10518 1.84391 1.07045 1.02050 1.73802 1.24504 0.95322 0.99867 1.10592 1.20163 1.02253 0.89357 0.96315 1.21202 1.00773 0.94710 0.96096 1.21708 1.05446 0.98165 0.91526 1.21582 0.76022 0.81216 0.92986 1.90626 1.53521 1.55612 1.48904 1.46418 1.63421 1.16072 1.09658 1.18850 0.94102 0.92981 0.81314 0.95612 1.22101 0.98836 0.98461 1.00497 1.21221 1.39332 0.89984 1.05855 0.92313 1.25592 0.95723 0.95488 0.99938 1.69973 1.46022 1.09160 1.31718 0.86074 0.79697 0.79603 0.79552 1.20120 1.20145 1.18299 0.89960 0.90876 0.91489 0.82542 0.80059 0.89730 0.87794 0.92403 0.93649 0.86863 0.85797 0.75761 0.94471 0.93656 0.92215 0.92015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.40 9.60 71.24 0.68 -0.71 16 2 C -0.12 -2.27 5.80 -20.92 -0.12 -2.40 16 3 C -0.14 -2.43 9.98 21.22 0.21 -2.22 16 4 C -0.22 -3.80 11.23 66.72 0.75 -3.05 16 5 S 0.06 1.27 23.33 -56.49 -1.32 -0.05 16 6 C -0.19 -3.80 5.76 24.59 0.14 -3.66 16 7 C -0.04 -0.74 5.07 29.85 0.15 -0.59 16 8 C -0.09 -2.13 4.49 30.60 0.14 -1.99 16 9 C -0.13 -2.96 5.70 29.85 0.17 -2.79 16 10 C 0.49 17.86 7.79 87.66 0.68 18.54 16 11 O -0.60 -27.38 15.65 -3.03 -0.05 -27.42 16 12 N -0.71 -27.21 5.07 -446.11 -2.26 -29.47 16 13 C 0.23 10.97 2.22 44.24 0.10 11.07 16 14 H 0.03 1.35 4.73 -2.39 -0.01 1.34 16 15 C -0.14 -6.05 9.47 71.98 0.68 -5.36 16 16 C -0.53 -28.38 9.05 25.60 0.23 -28.15 16 17 H 0.06 3.34 8.06 -2.91 -0.02 3.32 16 18 C 0.03 1.86 5.47 84.65 0.46 2.33 16 19 N -0.93 -55.49 13.96 21.45 0.30 -55.19 16 20 Si 0.93 45.13 26.99 68.60 1.85 46.98 16 21 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 22 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 23 H -0.26 -12.42 6.82 99.48 0.68 -11.74 16 24 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.07 0.95 8.13 -2.39 -0.02 0.93 16 26 H 0.07 1.03 6.96 -2.39 -0.02 1.02 16 27 H 0.16 2.00 8.06 -2.91 -0.02 1.97 16 28 H 0.18 2.23 8.06 -2.91 -0.02 2.21 16 29 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.10 1.42 7.32 -2.39 -0.02 1.40 16 31 H 0.06 1.54 7.81 -2.39 -0.02 1.53 16 32 H 0.04 1.31 8.10 -2.39 -0.02 1.29 16 33 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.41 13.36 8.59 -92.71 -0.80 12.57 16 36 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.04 1.97 8.14 -2.39 -0.02 1.96 16 38 H 0.06 2.38 8.14 -2.38 -0.02 2.37 16 39 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -69.60 338.76 3.02 -66.58 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: 0.22 Total: 17.56 kcal Atomic # 6 Polarization: -23.27 SS G_CDS: 4.28 Total: -18.99 kcal Atomic # 7 Polarization: -82.70 SS G_CDS: -1.96 Total: -84.66 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -0.05 Total: -27.42 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.85 Total: 46.98 kcal Atomic # 16 Polarization: 1.27 SS G_CDS: -1.32 Total: -0.05 kcal Total: -69.60 3.02 -66.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438827616.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.860 kcal (2) G-P(sol) polarization free energy of solvation -69.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds