Wall clock time and date at job start Tue Mar 31 2020 05:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38428 * 122.54399 * 2 1 4 4 C 1.33385 * 114.92237 * 180.26932 * 3 2 1 5 5 S 1.75889 * 109.59353 * 359.77786 * 4 3 2 6 6 C 1.33393 * 122.53835 * 179.83014 * 2 1 3 7 7 C 1.50694 * 125.20291 * 0.02562 * 6 2 1 8 8 C 1.53002 * 109.47403 * 89.71535 * 7 6 2 9 9 C 1.52996 * 109.47141 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.47006 * 180.02562 * 9 8 7 11 11 O 1.21278 * 119.99866 * 359.97438 * 10 9 8 12 12 N 1.34781 * 120.00101 * 179.97438 * 10 9 8 13 13 C 1.46499 * 119.99874 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.47391 * 325.00213 * 13 12 10 15 15 C 1.53000 * 109.46840 * 85.00543 * 13 12 10 16 16 C 1.50699 * 109.47060 * 205.00285 * 13 12 10 17 17 H 1.07999 * 120.00019 * 0.02562 * 16 13 12 18 18 C 1.37877 * 120.00129 * 180.02562 * 16 13 12 19 19 N 1.31519 * 119.99723 * 359.97438 * 18 16 13 20 20 Si 1.86803 * 119.99900 * 179.97438 * 18 16 13 21 21 H 1.48491 * 109.47312 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.46948 * 119.99892 * 20 18 16 23 23 H 1.48500 * 109.46809 * 239.99811 * 20 18 16 24 24 H 1.09007 * 109.46916 * 270.16790 * 1 2 3 25 25 H 1.08999 * 109.47021 * 30.16339 * 1 2 3 26 26 H 1.08996 * 109.46895 * 150.17105 * 1 2 3 27 27 H 1.08004 * 122.53458 * 0.04521 * 3 2 1 28 28 H 1.07998 * 125.20119 * 179.74174 * 4 3 2 29 29 H 1.09002 * 109.47477 * 329.71414 * 7 6 2 30 30 H 1.08997 * 109.47435 * 209.71950 * 7 6 2 31 31 H 1.09002 * 109.46730 * 60.00054 * 8 7 6 32 32 H 1.08997 * 109.47163 * 300.00581 * 8 7 6 33 33 H 1.09002 * 109.47281 * 60.00371 * 9 8 7 34 34 H 1.09003 * 109.47162 * 299.99722 * 9 8 7 35 35 H 0.97002 * 119.99716 * 0.02562 * 12 10 9 36 36 H 1.08992 * 109.47399 * 59.99666 * 15 13 12 37 37 H 1.09004 * 109.46724 * 180.02562 * 15 13 12 38 38 H 1.09001 * 109.47194 * 299.99493 * 15 13 12 39 39 H 0.97003 * 119.99231 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2517 1.1669 0.0000 4 6 3.5737 0.9900 -0.0057 5 16 3.9386 -0.7306 -0.0051 6 6 2.2245 -1.1245 0.0033 7 6 1.6536 -2.5192 0.0069 8 6 1.4543 -2.9925 -1.4343 9 6 0.8742 -4.4082 -1.4306 10 6 0.6785 -4.8745 -2.8503 11 8 0.9735 -4.1461 -3.7739 12 7 0.1756 -6.1012 -3.0934 13 6 -0.0151 -6.5543 -4.4734 14 1 -0.3085 -5.7091 -5.0961 15 6 1.2931 -7.1467 -5.0011 16 6 -1.0943 -7.6054 -4.5124 17 1 -1.5889 -7.9056 -3.6004 18 6 -1.4502 -8.1839 -5.7122 19 7 -0.8482 -7.8180 -6.8228 20 14 -2.7874 -9.4874 -5.7603 21 1 -3.3026 -9.7190 -4.3870 22 1 -3.8961 -9.0271 -6.6344 23 1 -2.2260 -10.7528 -6.2978 24 1 -0.3633 0.0030 1.0277 25 1 -0.3633 0.8885 -0.5164 26 1 -0.3633 -0.8915 -0.5112 27 1 1.7966 2.1464 0.0007 28 1 4.3078 1.7821 -0.0106 29 1 0.6945 -2.5180 0.5248 30 1 2.3418 -3.1921 0.5185 31 1 2.4135 -2.9938 -1.9522 32 1 0.7662 -2.3195 -1.9459 33 1 -0.0850 -4.4064 -0.9129 34 1 1.5621 -5.0814 -0.9190 35 1 -0.0607 -6.6836 -2.3546 36 1 1.5865 -7.9918 -4.3784 37 1 1.1513 -7.4834 -6.0280 38 1 2.0737 -6.3864 -4.9729 39 1 -1.0984 -8.2253 -7.6669 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000438827617.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:00 Heat of formation + Delta-G solvation = -34.840668 kcal Electronic energy + Delta-G solvation = -19014.036205 eV Core-core repulsion = 16047.203878 eV Total energy + Delta-G solvation = -2966.832327 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.04295 -38.52368 -35.11136 -34.35428 -32.35067 -31.10459 -29.53272 -28.38557 -25.66433 -25.22327 -23.04756 -21.92964 -20.61236 -19.32566 -18.48039 -17.50032 -16.80470 -15.71830 -15.52328 -15.28037 -15.07338 -14.25265 -14.12445 -13.93787 -13.25369 -13.02377 -12.96006 -12.44728 -12.34654 -12.31935 -11.98508 -11.79935 -11.62957 -11.47433 -11.23724 -11.05834 -10.94370 -10.82081 -10.69210 -10.53591 -10.28771 -10.22980 -9.02778 -8.96168 -8.65602 -8.53809 -8.41589 -7.86469 -6.11442 -4.20638 0.89840 1.54841 1.91137 2.57883 3.23778 3.31441 3.34150 3.47043 4.12644 4.38886 4.66958 4.80279 4.96034 5.18276 5.20261 5.23995 5.26526 5.33716 5.47826 5.52296 5.57301 5.68621 5.72898 5.83783 5.93693 5.96050 6.22671 6.32787 6.42549 6.50283 6.84778 6.99139 7.17857 7.50337 7.59309 7.71686 7.93977 8.17078 8.71411 8.80601 9.18979 9.47422 10.94585 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.037668 B = 0.002825 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.151116 B = 9908.736168 C =10174.703958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.113 4.113 3 C -0.127 4.127 4 C -0.220 4.220 5 S 0.090 5.910 6 C -0.166 4.166 7 C -0.050 4.050 8 C -0.096 4.096 9 C -0.142 4.142 10 C 0.498 3.502 11 O -0.557 6.557 12 N -0.712 5.712 13 C 0.263 3.737 14 H 0.047 0.953 15 C -0.147 4.147 16 C -0.533 4.533 17 H 0.061 0.939 18 C 0.065 3.935 19 N -0.883 5.883 20 Si 0.901 3.099 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.283 1.283 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.137 0.863 28 H 0.161 0.839 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.388 0.612 36 H 0.026 0.974 37 H 0.089 0.911 38 H 0.014 0.986 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.717 13.295 16.617 22.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.158 4.158 4 C -0.355 4.355 5 S 0.355 5.645 6 C -0.283 4.283 7 C -0.090 4.090 8 C -0.135 4.135 9 C -0.182 4.182 10 C 0.283 3.717 11 O -0.436 6.436 12 N -0.359 5.359 13 C 0.161 3.839 14 H 0.065 0.935 15 C -0.205 4.205 16 C -0.571 4.571 17 H 0.079 0.921 18 C -0.138 4.138 19 N -0.521 5.521 20 Si 0.729 3.271 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.209 1.209 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.155 0.845 28 H 0.179 0.821 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.220 0.780 36 H 0.045 0.955 37 H 0.108 0.892 38 H 0.033 0.967 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.300 12.923 15.718 21.619 hybrid contribution -1.953 -0.112 0.231 1.970 sum 5.347 12.811 15.949 21.145 Atomic orbital electron populations 1.20532 0.89777 1.03105 1.02032 1.18854 0.97503 0.91585 1.04519 1.20044 0.92880 0.99227 1.03654 1.25507 0.99716 0.98987 1.11333 1.84294 1.06326 1.00544 1.73318 1.24334 0.95403 0.99221 1.09333 1.20226 1.00883 0.89571 0.98293 1.21303 1.02616 0.95061 0.94482 1.21693 1.02754 0.97901 0.95901 1.20484 0.78101 0.82407 0.90689 1.90654 1.51602 1.55051 1.46303 1.46546 1.62758 1.15270 1.11375 1.18722 0.93324 0.94927 0.76908 0.93471 1.22072 0.96720 0.97859 1.03883 1.21271 1.19679 1.22053 0.94113 0.92058 1.24905 0.96608 0.96913 0.95388 1.69923 1.41265 1.42465 0.98461 0.86395 0.81428 0.81150 0.78136 1.19745 1.20877 1.20882 0.91454 0.91588 0.91066 0.84535 0.82135 0.89876 0.90807 0.91074 0.90845 0.89439 0.89561 0.77984 0.95527 0.89209 0.96697 0.92653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.86 9.60 36.01 0.35 -0.52 16 2 C -0.11 -1.22 5.80 -106.25 -0.62 -1.83 16 3 C -0.13 -1.27 9.98 -41.21 -0.41 -1.68 16 4 C -0.22 -2.13 11.23 29.04 0.33 -1.80 16 5 S 0.09 0.96 23.33 -107.50 -2.51 -1.55 16 6 C -0.17 -1.86 5.76 -36.00 -0.21 -2.07 16 7 C -0.05 -0.52 5.07 -27.88 -0.14 -0.66 16 8 C -0.10 -1.27 4.49 -26.73 -0.12 -1.39 16 9 C -0.14 -1.91 5.70 -27.88 -0.16 -2.07 16 10 C 0.50 9.84 7.79 -10.98 -0.09 9.75 16 11 O -0.56 -13.43 15.64 5.56 0.09 -13.35 16 12 N -0.71 -14.83 5.07 -54.93 -0.28 -15.11 16 13 C 0.26 6.78 2.56 -69.08 -0.18 6.61 16 14 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 15 C -0.15 -3.72 9.26 37.16 0.34 -3.37 16 16 C -0.53 -14.23 8.73 -34.44 -0.30 -14.53 16 17 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 18 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 19 N -0.88 -25.13 11.32 55.43 0.63 -24.51 16 20 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 21 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 25 H 0.07 0.54 8.13 -51.93 -0.42 0.12 16 26 H 0.07 0.68 6.95 -51.93 -0.36 0.31 16 27 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 28 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 29 H 0.08 0.75 7.33 -51.93 -0.38 0.37 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 32 H 0.07 1.08 7.79 -51.93 -0.40 0.67 16 33 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.39 6.91 8.54 -40.82 -0.35 6.56 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 38 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 338.98 15.07 5.11 5.11 Total: -1.00 -31.48 338.98 -9.25 -40.74 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -5.97 Total: 4.90 kcal Atomic # 6 Polarization: -10.61 SS G_CDS: -1.30 Total: -11.91 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 0.35 Total: -39.62 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.09 Total: -13.35 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -2.51 Total: -1.55 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.48 -9.25 -40.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438827617.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.895 kcal (2) G-P(sol) polarization free energy of solvation -31.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds