Wall clock time and date at job start Tue Mar 31 2020 05:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38428 * 122.54399 * 2 1 4 4 C 1.33385 * 114.92237 * 180.26932 * 3 2 1 5 5 S 1.75889 * 109.59353 * 359.77786 * 4 3 2 6 6 C 1.33393 * 122.53835 * 179.83014 * 2 1 3 7 7 C 1.50694 * 125.20291 * 0.02562 * 6 2 1 8 8 C 1.53002 * 109.47403 * 89.71535 * 7 6 2 9 9 C 1.52996 * 109.47141 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.47006 * 180.02562 * 9 8 7 11 11 O 1.21278 * 119.99866 * 359.97438 * 10 9 8 12 12 N 1.34781 * 120.00101 * 179.97438 * 10 9 8 13 13 C 1.46499 * 119.99874 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.47391 * 325.00213 * 13 12 10 15 15 C 1.53000 * 109.46840 * 85.00543 * 13 12 10 16 16 C 1.50699 * 109.47060 * 205.00285 * 13 12 10 17 17 H 1.07999 * 120.00019 * 0.02562 * 16 13 12 18 18 C 1.37877 * 120.00129 * 180.02562 * 16 13 12 19 19 N 1.31519 * 119.99723 * 359.97438 * 18 16 13 20 20 Si 1.86803 * 119.99900 * 179.97438 * 18 16 13 21 21 H 1.48491 * 109.47312 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.46948 * 119.99892 * 20 18 16 23 23 H 1.48500 * 109.46809 * 239.99811 * 20 18 16 24 24 H 1.09007 * 109.46916 * 270.16790 * 1 2 3 25 25 H 1.08999 * 109.47021 * 30.16339 * 1 2 3 26 26 H 1.08996 * 109.46895 * 150.17105 * 1 2 3 27 27 H 1.08004 * 122.53458 * 0.04521 * 3 2 1 28 28 H 1.07998 * 125.20119 * 179.74174 * 4 3 2 29 29 H 1.09002 * 109.47477 * 329.71414 * 7 6 2 30 30 H 1.08997 * 109.47435 * 209.71950 * 7 6 2 31 31 H 1.09002 * 109.46730 * 60.00054 * 8 7 6 32 32 H 1.08997 * 109.47163 * 300.00581 * 8 7 6 33 33 H 1.09002 * 109.47281 * 60.00371 * 9 8 7 34 34 H 1.09003 * 109.47162 * 299.99722 * 9 8 7 35 35 H 0.97002 * 119.99716 * 0.02562 * 12 10 9 36 36 H 1.08992 * 109.47399 * 59.99666 * 15 13 12 37 37 H 1.09004 * 109.46724 * 180.02562 * 15 13 12 38 38 H 1.09001 * 109.47194 * 299.99493 * 15 13 12 39 39 H 0.97003 * 119.99231 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2517 1.1669 0.0000 4 6 3.5737 0.9900 -0.0057 5 16 3.9386 -0.7306 -0.0051 6 6 2.2245 -1.1245 0.0033 7 6 1.6536 -2.5192 0.0069 8 6 1.4543 -2.9925 -1.4343 9 6 0.8742 -4.4082 -1.4306 10 6 0.6785 -4.8745 -2.8503 11 8 0.9735 -4.1461 -3.7739 12 7 0.1756 -6.1012 -3.0934 13 6 -0.0151 -6.5543 -4.4734 14 1 -0.3085 -5.7091 -5.0961 15 6 1.2931 -7.1467 -5.0011 16 6 -1.0943 -7.6054 -4.5124 17 1 -1.5889 -7.9056 -3.6004 18 6 -1.4502 -8.1839 -5.7122 19 7 -0.8482 -7.8180 -6.8228 20 14 -2.7874 -9.4874 -5.7603 21 1 -3.3026 -9.7190 -4.3870 22 1 -3.8961 -9.0271 -6.6344 23 1 -2.2260 -10.7528 -6.2978 24 1 -0.3633 0.0030 1.0277 25 1 -0.3633 0.8885 -0.5164 26 1 -0.3633 -0.8915 -0.5112 27 1 1.7966 2.1464 0.0007 28 1 4.3078 1.7821 -0.0106 29 1 0.6945 -2.5180 0.5248 30 1 2.3418 -3.1921 0.5185 31 1 2.4135 -2.9938 -1.9522 32 1 0.7662 -2.3195 -1.9459 33 1 -0.0850 -4.4064 -0.9129 34 1 1.5621 -5.0814 -0.9190 35 1 -0.0607 -6.6836 -2.3546 36 1 1.5865 -7.9918 -4.3784 37 1 1.1513 -7.4834 -6.0280 38 1 2.0737 -6.3864 -4.9729 39 1 -1.0984 -8.2253 -7.6669 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000438827617.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:59 Heat of formation + Delta-G solvation = -53.497582 kcal Electronic energy + Delta-G solvation = -19014.845230 eV Core-core repulsion = 16047.203878 eV Total energy + Delta-G solvation = -2967.641351 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.58424 -39.40927 -36.82495 -35.59133 -34.29308 -32.10304 -30.96338 -29.64292 -27.35533 -26.61308 -24.05482 -23.09668 -22.13345 -21.03144 -19.30020 -18.88383 -18.06427 -17.30197 -17.11425 -16.69050 -16.13818 -15.83506 -15.21668 -14.96823 -14.74882 -14.41454 -14.01399 -13.87256 -13.69894 -13.31826 -13.16094 -12.97638 -12.86481 -12.81980 -12.69087 -12.51610 -12.41316 -12.27658 -12.17410 -12.10026 -11.71231 -11.44923 -11.09093 -10.70297 -10.55283 -9.70959 -9.45918 -9.21110 -8.17596 -6.35343 0.11423 0.77708 1.13877 1.44597 1.45297 1.57711 1.81092 1.90010 2.36937 2.71264 3.12847 3.78320 3.97218 4.06336 4.11389 4.28624 4.42312 4.53928 4.65029 4.71053 4.72871 4.75788 4.81945 4.87225 4.90768 4.94231 5.09852 5.14421 5.15567 5.25678 5.39788 5.44820 5.58389 5.63282 5.70440 5.71627 5.92639 6.10834 6.73945 7.02625 7.33321 7.63440 8.89040 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.037668 B = 0.002825 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.151116 B = 9908.736168 C =10174.703958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.121 4.121 3 C -0.140 4.140 4 C -0.218 4.218 5 S 0.067 5.933 6 C -0.187 4.187 7 C -0.041 4.041 8 C -0.089 4.089 9 C -0.126 4.126 10 C 0.491 3.509 11 O -0.608 6.608 12 N -0.708 5.708 13 C 0.268 3.732 14 H -0.006 1.006 15 C -0.134 4.134 16 C -0.545 4.545 17 H 0.075 0.925 18 C 0.011 3.989 19 N -0.920 5.920 20 Si 0.974 3.026 21 H -0.258 1.258 22 H -0.284 1.284 23 H -0.279 1.279 24 H 0.083 0.917 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.157 0.843 28 H 0.183 0.817 29 H 0.103 0.897 30 H 0.087 0.913 31 H 0.046 0.954 32 H 0.052 0.948 33 H 0.121 0.879 34 H 0.118 0.882 35 H 0.406 0.594 36 H 0.041 0.959 37 H 0.065 0.935 38 H 0.009 0.991 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.847 12.902 19.127 23.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.133 4.133 3 C -0.170 4.170 4 C -0.353 4.353 5 S 0.332 5.668 6 C -0.304 4.304 7 C -0.080 4.080 8 C -0.128 4.128 9 C -0.166 4.166 10 C 0.279 3.721 11 O -0.490 6.490 12 N -0.357 5.357 13 C 0.165 3.835 14 H 0.012 0.988 15 C -0.192 4.192 16 C -0.583 4.583 17 H 0.093 0.907 18 C -0.189 4.189 19 N -0.558 5.558 20 Si 0.799 3.201 21 H -0.181 1.181 22 H -0.210 1.210 23 H -0.205 1.205 24 H 0.101 0.899 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.174 0.826 28 H 0.200 0.800 29 H 0.121 0.879 30 H 0.106 0.894 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.139 0.861 34 H 0.136 0.864 35 H 0.242 0.758 36 H 0.060 0.940 37 H 0.084 0.916 38 H 0.028 0.972 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.430 12.523 18.283 23.075 hybrid contribution -1.646 0.112 -0.579 1.748 sum 4.784 12.636 17.704 22.271 Atomic orbital electron populations 1.20577 0.88704 1.03125 1.03028 1.19209 0.98515 0.91816 1.03739 1.20339 0.93059 0.99973 1.03636 1.25833 1.00286 0.98721 1.10457 1.84329 1.06807 1.01949 1.73758 1.24506 0.95468 0.99834 1.10547 1.20155 1.02256 0.89397 0.96163 1.21195 1.00682 0.94705 0.96215 1.21694 1.05340 0.98159 0.91379 1.21630 0.76265 0.81241 0.92975 1.90634 1.53427 1.56243 1.48722 1.46316 1.63127 1.16302 1.09964 1.18309 0.93365 0.92954 0.78917 0.98772 1.21897 0.96546 0.98068 1.02737 1.21603 1.19935 1.22004 0.94785 0.90671 1.25854 0.98906 0.99142 0.94963 1.70077 1.42836 1.43775 0.99128 0.85263 0.78129 0.78055 0.78676 1.18144 1.21024 1.20476 0.89875 0.90944 0.91703 0.82589 0.79977 0.87924 0.89405 0.93559 0.92926 0.86115 0.86358 0.75833 0.93966 0.91646 0.97166 0.92600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.56 9.60 71.24 0.68 -0.87 16 2 C -0.12 -2.44 5.80 -20.92 -0.12 -2.56 16 3 C -0.14 -2.56 9.98 21.22 0.21 -2.35 16 4 C -0.22 -3.92 11.23 66.72 0.75 -3.17 16 5 S 0.07 1.38 23.33 -56.49 -1.32 0.06 16 6 C -0.19 -3.98 5.76 24.59 0.14 -3.84 16 7 C -0.04 -0.76 5.07 29.85 0.15 -0.61 16 8 C -0.09 -2.28 4.49 30.59 0.14 -2.15 16 9 C -0.13 -3.10 5.70 29.85 0.17 -2.93 16 10 C 0.49 19.25 7.79 87.66 0.68 19.93 16 11 O -0.61 -30.35 15.64 -3.02 -0.05 -30.40 16 12 N -0.71 -29.10 5.07 -446.09 -2.26 -31.36 16 13 C 0.27 14.12 2.56 44.25 0.11 14.23 16 14 H -0.01 -0.35 7.58 -2.39 -0.02 -0.37 16 15 C -0.13 -6.92 9.26 71.98 0.67 -6.25 16 16 C -0.55 -28.96 8.73 25.60 0.22 -28.74 16 17 H 0.08 3.70 7.74 -2.91 -0.02 3.67 16 18 C 0.01 0.60 5.30 84.65 0.45 1.05 16 19 N -0.92 -53.42 11.32 21.45 0.24 -53.17 16 20 Si 0.97 42.01 29.54 68.60 2.03 44.04 16 21 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 22 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 23 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 24 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 25 H 0.07 1.07 8.13 -2.39 -0.02 1.05 16 26 H 0.06 1.14 6.95 -2.39 -0.02 1.12 16 27 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 28 H 0.18 2.32 8.06 -2.91 -0.02 2.30 16 29 H 0.10 1.52 7.33 -2.39 -0.02 1.50 16 30 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.05 1.40 8.10 -2.39 -0.02 1.38 16 32 H 0.05 1.55 7.79 -2.39 -0.02 1.53 16 33 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.41 13.62 8.54 -92.71 -0.79 12.83 16 36 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.06 3.71 6.07 -2.39 -0.01 3.69 16 38 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -70.68 338.98 3.15 -67.53 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: 0.25 Total: 21.56 kcal Atomic # 6 Polarization: -22.51 SS G_CDS: 4.26 Total: -18.26 kcal Atomic # 7 Polarization: -82.52 SS G_CDS: -2.02 Total: -84.54 kcal Atomic # 8 Polarization: -30.35 SS G_CDS: -0.05 Total: -30.40 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Atomic # 16 Polarization: 1.38 SS G_CDS: -1.32 Total: 0.06 kcal Total: -70.68 3.15 -67.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438827617.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.036 kcal (2) G-P(sol) polarization free energy of solvation -70.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds