Wall clock time and date at job start Tue Mar 31 2020 05:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33811 * 122.44773 * 2 1 4 4 S 1.70622 * 110.95259 * 179.78198 * 3 2 1 5 5 C 1.75829 * 91.56505 * 0.30161 * 4 3 2 6 6 C 1.46576 * 125.46106 * 179.97438 * 5 4 3 7 7 O 1.21704 * 120.00049 * 179.69350 * 6 5 4 8 8 N 1.34777 * 119.99910 * 359.69935 * 6 5 4 9 9 C 1.46506 * 119.99873 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47035 * 179.97438 * 9 8 6 11 11 C 1.53000 * 109.46911 * 300.00027 * 10 9 8 12 12 C 1.53001 * 109.46963 * 59.99511 * 10 9 8 13 13 C 1.52996 * 109.46969 * 179.97438 * 10 9 8 14 14 C 1.50699 * 109.46861 * 179.97438 * 13 10 9 15 15 H 1.08003 * 119.99962 * 359.97438 * 14 13 10 16 16 C 1.37884 * 120.00200 * 180.02562 * 14 13 10 17 17 N 1.31516 * 119.99569 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00031 * 180.02562 * 16 14 13 19 19 H 1.48490 * 109.47198 * 59.99782 * 18 16 14 20 20 H 1.48506 * 109.46650 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47066 * 299.99491 * 18 16 14 22 22 C 1.36654 * 109.08150 * 359.70049 * 5 4 3 23 23 H 1.08996 * 109.47735 * 269.97911 * 1 2 3 24 24 H 1.09005 * 109.47333 * 29.98310 * 1 2 3 25 25 H 1.09001 * 109.47266 * 149.97815 * 1 2 3 26 26 H 1.07997 * 124.52933 * 0.02562 * 3 2 1 27 27 H 0.96999 * 120.00047 * 359.97438 * 8 6 5 28 28 H 1.09004 * 109.47073 * 299.99562 * 9 8 6 29 29 H 1.09000 * 109.47212 * 59.99645 * 9 8 6 30 30 H 1.09002 * 109.47398 * 60.00028 * 11 10 9 31 31 H 1.09001 * 109.47194 * 180.02562 * 11 10 9 32 32 H 1.09000 * 109.46968 * 300.00009 * 11 10 9 33 33 H 1.09004 * 109.47086 * 60.00354 * 12 10 9 34 34 H 1.09001 * 109.46652 * 180.02562 * 12 10 9 35 35 H 1.08992 * 109.47514 * 300.00067 * 12 10 9 36 36 H 1.08992 * 109.47534 * 299.99582 * 13 10 9 37 37 H 1.08996 * 109.47134 * 60.00388 * 13 10 9 38 38 H 0.97002 * 119.99797 * 180.02562 * 17 16 14 39 39 H 1.07996 * 123.35303 * 180.24946 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2249 1.1292 0.0000 4 16 3.8969 0.7892 0.0061 5 6 3.5937 -0.9427 -0.0006 6 6 4.6231 -1.9862 0.0000 7 8 4.3001 -3.1596 0.0006 8 7 5.9272 -1.6463 -0.0001 9 6 6.9561 -2.6893 -0.0001 10 6 8.3412 -2.0393 -0.0008 11 6 8.4960 -1.1702 -1.2504 12 6 8.4969 -1.1692 1.2480 13 6 9.4156 -3.1285 -0.0001 14 6 10.7799 -2.4883 -0.0014 15 1 10.8714 -1.4122 -0.0031 16 6 11.9113 -3.2764 -0.0017 17 7 11.7998 -4.5868 -0.0002 18 14 13.6023 -2.4828 -0.0026 19 1 13.7535 -1.6384 1.2094 20 1 14.6452 -3.5400 -0.0021 21 1 13.7526 -1.6392 -1.2155 22 6 2.2446 -1.1601 -0.0003 23 1 -0.3634 -0.0004 1.0276 24 1 -0.3634 0.8902 -0.5136 25 1 -0.3634 -0.8898 -0.5142 26 1 1.8025 2.1232 0.0004 27 1 6.1847 -0.7111 -0.0009 28 1 6.8455 -3.3087 0.8900 29 1 6.8454 -3.3089 -0.8900 30 1 7.7305 -0.3942 -1.2505 31 1 9.4829 -0.7075 -1.2512 32 1 8.3850 -1.7901 -2.1401 33 1 8.3865 -1.7883 2.1384 34 1 9.4835 -0.7058 1.2472 35 1 7.7314 -0.3932 1.2480 36 1 9.3052 -3.7473 0.8903 37 1 9.3049 -3.7486 -0.8896 38 1 12.5958 -5.1413 0.0001 39 1 1.8019 -2.1452 0.0001 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451770630.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:01 Heat of formation + Delta-G solvation = -30.208795 kcal Electronic energy + Delta-G solvation = -19399.097850 eV Core-core repulsion = 16432.466377 eV Total energy + Delta-G solvation = -2966.631474 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.76203 -38.29634 -36.99233 -33.66322 -32.16198 -31.12582 -28.15827 -27.18419 -26.52994 -26.50935 -24.22704 -22.60086 -20.54511 -19.21945 -18.82648 -17.74814 -16.41882 -16.04111 -15.72934 -15.22552 -14.57320 -14.43805 -14.21728 -13.63562 -13.57079 -13.39715 -13.11846 -12.79193 -12.39652 -12.35720 -12.20178 -12.05635 -12.04254 -11.17449 -11.11440 -11.01326 -10.87887 -10.64188 -10.42518 -10.27975 -10.01521 -9.89450 -9.20570 -9.09260 -8.94942 -8.78366 -8.59768 -8.36083 -6.00250 -4.01689 0.36370 1.29807 1.70117 2.18916 3.26793 3.31859 3.32102 3.37349 3.39102 4.44800 4.68232 4.73394 4.99048 5.06815 5.31324 5.32827 5.35114 5.45883 5.60040 5.62122 5.71072 5.74274 6.08310 6.14797 6.17716 6.20138 6.27099 6.36758 6.49696 6.61356 6.71495 7.03711 7.05722 7.10284 7.61696 7.64376 7.75313 7.98136 8.28635 8.40215 9.02753 9.61364 11.11192 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.042700 B = 0.003282 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.587513 B = 8529.761805 C = 8983.685973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.117 4.117 3 C -0.240 4.240 4 S 0.199 5.801 5 C -0.254 4.254 6 C 0.582 3.418 7 O -0.533 6.533 8 N -0.716 5.716 9 C 0.128 3.872 10 C -0.073 4.073 11 C -0.128 4.128 12 C -0.128 4.128 13 C 0.037 3.963 14 C -0.512 4.512 15 H 0.059 0.941 16 C 0.056 3.944 17 N -0.895 5.895 18 Si 0.889 3.111 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.278 1.278 22 C -0.059 4.059 23 H 0.070 0.930 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.167 0.833 27 H 0.396 0.604 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.027 0.973 31 H 0.068 0.932 32 H 0.048 0.952 33 H 0.049 0.951 34 H 0.068 0.932 35 H 0.027 0.973 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.261 0.739 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.265 12.813 0.021 23.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.130 4.130 3 C -0.378 4.378 4 S 0.467 5.533 5 C -0.374 4.374 6 C 0.367 3.633 7 O -0.412 6.412 8 N -0.367 5.367 9 C 0.006 3.994 10 C -0.074 4.074 11 C -0.185 4.185 12 C -0.185 4.185 13 C -0.001 4.001 14 C -0.550 4.550 15 H 0.077 0.923 16 C -0.145 4.145 17 N -0.534 5.534 18 Si 0.717 3.283 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.203 1.203 22 C -0.093 4.093 23 H 0.088 0.912 24 H 0.084 0.916 25 H 0.087 0.913 26 H 0.184 0.816 27 H 0.231 0.769 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.047 0.953 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.046 0.954 36 H 0.037 0.963 37 H 0.037 0.963 38 H 0.070 0.930 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -18.013 12.715 0.029 22.048 hybrid contribution -0.219 0.022 -0.003 0.221 sum -18.232 12.737 0.026 22.241 Atomic orbital electron populations 1.20507 0.89444 1.02852 1.02412 1.18785 0.97914 0.91549 1.04779 1.25114 0.98601 1.03278 1.10777 1.83081 1.03902 0.98486 1.67798 1.24759 0.98188 0.97195 1.17283 1.16978 0.81923 0.87316 0.77085 1.90827 1.81752 1.18145 1.50491 1.46108 1.05327 1.11017 1.74210 1.21712 0.86252 0.89320 1.02164 1.20927 0.93226 0.98050 0.95168 1.21775 1.01155 0.98296 0.97312 1.21775 1.01154 0.98286 0.97320 1.19082 0.91342 0.92086 0.97561 1.21142 0.90584 0.92845 1.50476 0.92290 1.25013 0.99127 0.94800 0.95527 1.69956 1.29242 1.03459 1.50719 0.86705 0.84126 0.78913 0.78517 1.20328 1.21395 1.20323 1.20662 0.91033 0.99962 0.97594 0.91152 0.91560 0.91255 0.81555 0.76860 0.91431 0.91439 0.95350 0.91271 0.93238 0.93233 0.91274 0.95360 0.96267 0.96275 0.92964 0.82932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.62 10.13 36.00 0.36 -0.26 16 2 C -0.12 -1.11 5.78 -106.46 -0.62 -1.72 16 3 C -0.24 -2.08 10.67 29.18 0.31 -1.77 16 4 S 0.20 1.95 22.16 -107.50 -2.38 -0.43 16 5 C -0.25 -3.31 6.45 -36.79 -0.24 -3.55 16 6 C 0.58 9.44 7.78 -12.90 -0.10 9.34 16 7 O -0.53 -10.49 16.84 5.19 0.09 -10.40 16 8 N -0.72 -11.06 4.95 -61.64 -0.31 -11.36 16 9 C 0.13 2.30 4.56 -4.04 -0.02 2.28 16 10 C -0.07 -1.40 0.54 -154.51 -0.08 -1.48 16 11 C -0.13 -2.25 8.05 37.16 0.30 -1.96 16 12 C -0.13 -2.25 8.05 37.16 0.30 -1.95 16 13 C 0.04 0.90 4.04 -27.89 -0.11 0.79 16 14 C -0.51 -13.53 7.65 -34.44 -0.26 -13.79 16 15 H 0.06 1.49 5.68 -52.48 -0.30 1.19 16 16 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 17 N -0.89 -26.36 13.29 55.43 0.74 -25.63 16 18 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 C -0.06 -0.70 9.80 -40.43 -0.40 -1.09 16 23 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 24 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 25 H 0.07 0.43 8.13 -51.93 -0.42 0.01 16 26 H 0.17 1.01 8.06 -52.49 -0.42 0.59 16 27 H 0.40 5.32 5.28 -40.82 -0.22 5.11 16 28 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 31 H 0.07 1.30 6.62 -51.93 -0.34 0.95 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 1.30 6.62 -51.93 -0.34 0.95 16 35 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 36 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.15 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 332.63 15.07 5.01 5.01 Total: -1.00 -30.84 332.63 -8.22 -39.06 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -5.70 Total: 1.34 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: -0.65 Total: -13.70 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: 0.43 Total: -36.99 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.09 Total: -10.40 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -2.38 Total: -0.43 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.84 -8.22 -39.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451770630.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.849 kcal (2) G-P(sol) polarization free energy of solvation -30.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds