Wall clock time and date at job start Tue Mar 31 2020 05:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33811 * 122.44773 * 2 1 4 4 S 1.70622 * 110.95259 * 179.78198 * 3 2 1 5 5 C 1.75829 * 91.56505 * 0.30161 * 4 3 2 6 6 C 1.46576 * 125.46106 * 179.97438 * 5 4 3 7 7 O 1.21704 * 120.00049 * 179.69350 * 6 5 4 8 8 N 1.34777 * 119.99910 * 359.69935 * 6 5 4 9 9 C 1.46506 * 119.99873 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47035 * 179.97438 * 9 8 6 11 11 C 1.53000 * 109.46911 * 300.00027 * 10 9 8 12 12 C 1.53001 * 109.46963 * 59.99511 * 10 9 8 13 13 C 1.52996 * 109.46969 * 179.97438 * 10 9 8 14 14 C 1.50699 * 109.46861 * 179.97438 * 13 10 9 15 15 H 1.08003 * 119.99962 * 359.97438 * 14 13 10 16 16 C 1.37884 * 120.00200 * 180.02562 * 14 13 10 17 17 N 1.31516 * 119.99569 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00031 * 180.02562 * 16 14 13 19 19 H 1.48490 * 109.47198 * 59.99782 * 18 16 14 20 20 H 1.48506 * 109.46650 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47066 * 299.99491 * 18 16 14 22 22 C 1.36654 * 109.08150 * 359.70049 * 5 4 3 23 23 H 1.08996 * 109.47735 * 269.97911 * 1 2 3 24 24 H 1.09005 * 109.47333 * 29.98310 * 1 2 3 25 25 H 1.09001 * 109.47266 * 149.97815 * 1 2 3 26 26 H 1.07997 * 124.52933 * 0.02562 * 3 2 1 27 27 H 0.96999 * 120.00047 * 359.97438 * 8 6 5 28 28 H 1.09004 * 109.47073 * 299.99562 * 9 8 6 29 29 H 1.09000 * 109.47212 * 59.99645 * 9 8 6 30 30 H 1.09002 * 109.47398 * 60.00028 * 11 10 9 31 31 H 1.09001 * 109.47194 * 180.02562 * 11 10 9 32 32 H 1.09000 * 109.46968 * 300.00009 * 11 10 9 33 33 H 1.09004 * 109.47086 * 60.00354 * 12 10 9 34 34 H 1.09001 * 109.46652 * 180.02562 * 12 10 9 35 35 H 1.08992 * 109.47514 * 300.00067 * 12 10 9 36 36 H 1.08992 * 109.47534 * 299.99582 * 13 10 9 37 37 H 1.08996 * 109.47134 * 60.00388 * 13 10 9 38 38 H 0.97002 * 119.99797 * 180.02562 * 17 16 14 39 39 H 1.07996 * 123.35303 * 180.24946 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2249 1.1292 0.0000 4 16 3.8969 0.7892 0.0061 5 6 3.5937 -0.9427 -0.0006 6 6 4.6231 -1.9862 0.0000 7 8 4.3001 -3.1596 0.0006 8 7 5.9272 -1.6463 -0.0001 9 6 6.9561 -2.6893 -0.0001 10 6 8.3412 -2.0393 -0.0008 11 6 8.4960 -1.1702 -1.2504 12 6 8.4969 -1.1692 1.2480 13 6 9.4156 -3.1285 -0.0001 14 6 10.7799 -2.4883 -0.0014 15 1 10.8714 -1.4122 -0.0031 16 6 11.9113 -3.2764 -0.0017 17 7 11.7998 -4.5868 -0.0002 18 14 13.6023 -2.4828 -0.0026 19 1 13.7535 -1.6384 1.2094 20 1 14.6452 -3.5400 -0.0021 21 1 13.7526 -1.6392 -1.2155 22 6 2.2446 -1.1601 -0.0003 23 1 -0.3634 -0.0004 1.0276 24 1 -0.3634 0.8902 -0.5136 25 1 -0.3634 -0.8898 -0.5142 26 1 1.8025 2.1232 0.0004 27 1 6.1847 -0.7111 -0.0009 28 1 6.8455 -3.3087 0.8900 29 1 6.8454 -3.3089 -0.8900 30 1 7.7305 -0.3942 -1.2505 31 1 9.4829 -0.7075 -1.2512 32 1 8.3850 -1.7901 -2.1401 33 1 8.3865 -1.7883 2.1384 34 1 9.4835 -0.7058 1.2472 35 1 7.7314 -0.3932 1.2480 36 1 9.3052 -3.7473 0.8903 37 1 9.3049 -3.7486 -0.8896 38 1 12.5958 -5.1413 0.0001 39 1 1.8019 -2.1452 0.0001 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451770630.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:00 Heat of formation + Delta-G solvation = -48.586582 kcal Electronic energy + Delta-G solvation = -19399.894771 eV Core-core repulsion = 16432.466377 eV Total energy + Delta-G solvation = -2967.428394 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.03349 -39.26358 -38.44107 -35.31458 -34.01385 -31.98753 -29.20785 -28.75088 -27.98919 -27.84903 -25.61142 -24.22437 -21.74685 -20.24869 -19.88877 -19.07226 -18.36395 -17.12886 -17.02083 -16.55555 -16.43477 -15.59150 -15.31332 -14.90632 -14.70264 -14.61666 -14.36080 -14.04805 -13.94360 -13.82641 -13.14788 -12.92627 -12.82453 -12.78161 -12.75323 -12.60175 -12.34216 -12.24337 -12.02437 -11.87472 -11.56269 -11.37787 -10.97103 -10.87058 -10.50026 -10.28517 -9.81965 -9.34405 -8.13264 -6.21207 -0.51344 0.47795 0.93275 1.34428 1.43408 1.45521 1.52677 2.06536 2.11225 2.45553 3.21203 3.71466 3.94300 4.04623 4.07675 4.18340 4.20843 4.40133 4.65365 4.68036 4.70252 4.72371 4.87578 4.92375 4.92715 5.05069 5.07080 5.10379 5.29191 5.40070 5.42337 5.48657 5.48991 5.50753 5.55925 5.78587 5.89743 6.29582 6.40412 6.93507 7.04780 7.46498 8.99153 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.042700 B = 0.003282 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.587513 B = 8529.761805 C = 8983.685973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.131 4.131 3 C -0.222 4.222 4 S 0.237 5.763 5 C -0.298 4.298 6 C 0.582 3.418 7 O -0.580 6.580 8 N -0.705 5.705 9 C 0.140 3.860 10 C -0.065 4.065 11 C -0.123 4.123 12 C -0.123 4.123 13 C 0.041 3.959 14 C -0.514 4.514 15 H 0.074 0.926 16 C -0.005 4.005 17 N -0.939 5.939 18 Si 0.959 3.041 19 H -0.266 1.266 20 H -0.292 1.292 21 H -0.266 1.266 22 C -0.057 4.057 23 H 0.078 0.922 24 H 0.084 0.916 25 H 0.069 0.931 26 H 0.201 0.799 27 H 0.408 0.592 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.039 0.961 33 H 0.039 0.961 34 H 0.060 0.940 35 H 0.066 0.934 36 H -0.013 1.013 37 H -0.013 1.013 38 H 0.260 0.740 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.346 16.701 0.015 26.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.143 4.143 3 C -0.360 4.360 4 S 0.506 5.494 5 C -0.418 4.418 6 C 0.369 3.631 7 O -0.462 6.462 8 N -0.357 5.357 9 C 0.016 3.984 10 C -0.066 4.066 11 C -0.181 4.181 12 C -0.181 4.181 13 C 0.003 3.997 14 C -0.552 4.552 15 H 0.092 0.908 16 C -0.202 4.202 17 N -0.580 5.580 18 Si 0.784 3.216 19 H -0.191 1.191 20 H -0.218 1.218 21 H -0.191 1.191 22 C -0.092 4.092 23 H 0.097 0.903 24 H 0.103 0.897 25 H 0.088 0.912 26 H 0.218 0.782 27 H 0.246 0.754 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.006 0.994 37 H 0.005 0.995 38 H 0.068 0.932 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -19.096 16.660 0.024 25.341 hybrid contribution 0.003 -1.150 -0.001 1.150 sum -19.092 15.510 0.023 24.598 Atomic orbital electron populations 1.20569 0.87440 1.03822 1.03246 1.18982 0.99366 0.90782 1.05170 1.25590 0.97954 1.04541 1.07891 1.82871 1.04643 0.95054 1.66837 1.24483 0.97636 0.98694 1.20948 1.17423 0.82355 0.87541 0.75733 1.90793 1.82427 1.20382 1.52609 1.45860 1.04751 1.10888 1.74194 1.21331 0.86643 0.89696 1.00694 1.20732 0.91758 0.96869 0.97226 1.21715 1.01960 0.98630 0.95751 1.21714 1.01960 0.98619 0.95760 1.18955 0.93204 0.93022 0.94491 1.21561 0.91196 0.93585 1.48908 0.90819 1.25954 1.03550 0.95238 0.95440 1.70119 1.30214 1.05166 1.52498 0.85591 0.78886 0.77925 0.79192 1.19112 1.21770 1.19099 1.20854 0.91003 1.00758 0.96585 0.90342 0.89723 0.91248 0.78204 0.75394 0.93065 0.93074 0.91554 0.92117 0.94230 0.94224 0.92120 0.91564 0.99445 0.99457 0.93169 0.83843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.96 10.13 71.23 0.72 -0.24 16 2 C -0.13 -2.12 5.78 -21.05 -0.12 -2.24 16 3 C -0.22 -2.96 10.67 66.81 0.71 -2.25 16 4 S 0.24 3.89 22.16 -56.49 -1.25 2.64 16 5 C -0.30 -7.46 6.45 24.08 0.16 -7.31 16 6 C 0.58 19.02 7.78 86.42 0.67 19.69 16 7 O -0.58 -23.81 16.84 -4.36 -0.07 -23.88 16 8 N -0.71 -21.40 4.95 -467.15 -2.31 -23.72 16 9 C 0.14 5.19 4.56 86.38 0.39 5.58 16 10 C -0.07 -2.50 0.54 -52.18 -0.03 -2.53 16 11 C -0.12 -4.18 8.05 71.98 0.58 -3.60 16 12 C -0.12 -4.18 8.05 71.98 0.58 -3.60 16 13 C 0.04 2.09 4.04 29.85 0.12 2.21 16 14 C -0.51 -27.48 7.65 25.60 0.20 -27.29 16 15 H 0.07 3.65 5.68 -2.91 -0.02 3.64 16 16 C 0.00 -0.28 5.46 84.66 0.46 0.19 16 17 N -0.94 -57.20 13.29 21.45 0.28 -56.91 16 18 Si 0.96 43.43 29.54 68.60 2.03 45.46 16 19 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 20 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 21 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 22 C -0.06 -1.29 9.80 21.72 0.21 -1.08 16 23 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 24 H 0.08 0.58 8.12 -2.38 -0.02 0.56 16 25 H 0.07 0.72 8.13 -2.39 -0.02 0.70 16 26 H 0.20 1.31 8.06 -2.91 -0.02 1.29 16 27 H 0.41 10.06 5.28 -92.71 -0.49 9.57 16 28 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 29 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.07 1.73 6.86 -2.39 -0.02 1.72 16 31 H 0.06 2.17 6.62 -2.39 -0.02 2.15 16 32 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 34 H 0.06 2.17 6.62 -2.39 -0.02 2.15 16 35 H 0.07 1.73 6.86 -2.39 -0.02 1.71 16 36 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 37 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 38 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 39 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -69.77 332.63 3.89 -65.88 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: 0.56 Total: 12.99 kcal Atomic # 6 Polarization: -27.12 SS G_CDS: 4.66 Total: -22.47 kcal Atomic # 7 Polarization: -78.60 SS G_CDS: -2.03 Total: -80.63 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.07 Total: -23.88 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: 3.89 SS G_CDS: -1.25 Total: 2.64 kcal Total: -69.77 3.89 -65.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451770630.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.295 kcal (2) G-P(sol) polarization free energy of solvation -69.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds