Wall clock time and date at job start Tue Mar 31 2020 05:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 S 1.70449 * 124.59187 * 2 1 4 4 C 1.75510 * 92.44403 * 180.02562 * 3 2 1 5 5 C 1.32774 * 110.57509 * 359.73803 * 4 3 2 6 6 C 1.36010 * 124.59097 * 180.02562 * 2 1 3 7 7 C 1.47191 * 123.46099 * 359.97438 * 6 2 1 8 8 O 1.21633 * 119.99989 * 0.02562 * 7 6 2 9 9 N 1.34777 * 119.99772 * 179.97438 * 7 6 2 10 10 C 1.46499 * 119.99665 * 179.72411 * 9 7 6 11 11 C 1.53004 * 109.47198 * 180.27868 * 10 9 7 12 12 C 1.52998 * 109.46876 * 299.99984 * 11 10 9 13 13 C 1.53005 * 109.46795 * 60.00011 * 11 10 9 14 14 C 1.52997 * 109.47000 * 179.97438 * 11 10 9 15 15 C 1.50703 * 109.46940 * 179.97438 * 14 11 10 16 16 H 1.08001 * 120.00043 * 0.02562 * 15 14 11 17 17 C 1.37875 * 120.00213 * 180.02562 * 15 14 11 18 18 N 1.31516 * 120.00298 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99907 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47136 * 89.99860 * 19 17 15 21 21 H 1.48503 * 109.47098 * 209.99926 * 19 17 15 22 22 H 1.48504 * 109.46915 * 329.99781 * 19 17 15 23 23 H 1.09001 * 109.47214 * 270.00020 * 1 2 3 24 24 H 1.08997 * 109.47051 * 30.00032 * 1 2 3 25 25 H 1.09000 * 109.47355 * 149.99965 * 1 2 3 26 26 H 1.08003 * 124.71007 * 179.97438 * 4 3 2 27 27 H 1.07998 * 123.45645 * 180.23154 * 5 4 3 28 28 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 29 29 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 30 30 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 31 31 H 1.08996 * 109.47009 * 60.00253 * 12 11 10 32 32 H 1.09004 * 109.46783 * 179.97438 * 12 11 10 33 33 H 1.08998 * 109.47156 * 300.00070 * 12 11 10 34 34 H 1.09000 * 109.47011 * 60.00556 * 13 11 10 35 35 H 1.09004 * 109.46658 * 180.02562 * 13 11 10 36 36 H 1.08996 * 109.47069 * 299.99740 * 13 11 10 37 37 H 1.08995 * 109.47672 * 299.99669 * 14 11 10 38 38 H 1.09007 * 109.47288 * 60.00489 * 14 11 10 39 39 H 0.96997 * 120.00401 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4747 1.4032 0.0000 4 6 3.9607 0.4693 -0.0008 5 6 3.6943 -0.8315 0.0047 6 6 2.2791 -1.1197 -0.0005 7 6 1.7290 -2.4849 -0.0006 8 8 0.5246 -2.6553 -0.0006 9 7 2.5598 -3.5462 -0.0016 10 6 2.0122 -4.9050 0.0045 11 6 3.1595 -5.9172 0.0089 12 6 4.0190 -5.7192 -1.2413 13 6 4.0192 -5.7082 1.2572 14 6 2.5876 -7.3362 0.0158 15 6 3.7177 -8.3332 0.0195 16 1 4.7414 -7.9891 0.0176 17 6 3.4448 -9.6847 0.0254 18 7 4.4310 -10.5548 0.0292 19 14 1.6742 -10.2799 0.0281 20 1 1.2049 -10.4437 -1.3713 21 1 1.5914 -11.5839 0.7338 22 1 0.8186 -9.2853 0.7239 23 1 -0.3634 0.0000 1.0277 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3634 -0.8900 -0.5138 26 1 4.9538 0.8937 -0.0014 27 1 4.4576 -1.5955 0.0089 28 1 3.5202 -3.4103 -0.0019 29 1 1.3998 -5.0461 0.8952 30 1 1.3997 -5.0539 -0.8848 31 1 4.4264 -4.7083 -1.2458 32 1 4.8367 -6.4401 -1.2379 33 1 3.4065 -5.8681 -2.1306 34 1 3.4068 -5.8492 2.1478 35 1 4.8368 -6.4290 1.2601 36 1 4.4266 -4.6972 1.2526 37 1 1.9756 -7.4770 0.9067 38 1 1.9749 -7.4855 -0.8733 39 1 4.2390 -11.5055 0.0337 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451773041.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:50 Heat of formation + Delta-G solvation = -26.739602 kcal Electronic energy + Delta-G solvation = -19729.231138 eV Core-core repulsion = 16762.750100 eV Total energy + Delta-G solvation = -2966.481038 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.98239 -37.65682 -36.66865 -33.75797 -32.21903 -31.89366 -28.18791 -27.49486 -26.56650 -25.96347 -23.65051 -22.35896 -21.39605 -19.50517 -18.07966 -17.44074 -16.95639 -16.39391 -15.64159 -15.26565 -14.51200 -14.17176 -14.03864 -13.72516 -13.49955 -13.37534 -13.33831 -12.78119 -12.73029 -12.37189 -12.27435 -12.18718 -11.75572 -11.26571 -11.25075 -11.13026 -11.01008 -10.62272 -10.49477 -9.97730 -9.83748 -9.73436 -9.42730 -9.03446 -8.99896 -8.86415 -8.56511 -8.53646 -6.04545 -4.01861 0.63462 1.28095 1.68196 1.84748 3.31555 3.39548 3.41774 3.43695 3.49114 4.45552 4.47929 4.75901 4.96031 5.12212 5.28103 5.36403 5.38607 5.48486 5.52547 5.62903 5.75217 5.76842 6.06148 6.08430 6.10153 6.12150 6.21531 6.31042 6.49333 6.58793 6.70052 6.89915 7.00753 7.04239 7.19694 7.36316 7.68197 7.79497 8.36937 8.52631 8.99407 9.58192 11.08187 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.036379 B = 0.003510 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.484914 B = 7974.393837 C = 8542.192677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.139 4.139 3 S 0.166 5.834 4 C -0.235 4.235 5 C -0.104 4.104 6 C -0.173 4.173 7 C 0.573 3.427 8 O -0.543 6.543 9 N -0.714 5.714 10 C 0.126 3.874 11 C -0.063 4.063 12 C -0.129 4.129 13 C -0.129 4.129 14 C -0.002 4.002 15 C -0.511 4.511 16 H 0.078 0.922 17 C 0.067 3.933 18 N -0.904 5.904 19 Si 0.875 3.125 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.265 1.265 23 H 0.079 0.921 24 H 0.064 0.936 25 H 0.106 0.894 26 H 0.168 0.832 27 H 0.148 0.852 28 H 0.399 0.601 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.030 0.970 32 H 0.073 0.927 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.073 0.927 36 H 0.030 0.970 37 H 0.018 0.982 38 H 0.014 0.986 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.108 23.755 -0.062 23.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.260 4.260 3 S 0.431 5.569 4 C -0.370 4.370 5 C -0.133 4.133 6 C -0.189 4.189 7 C 0.359 3.641 8 O -0.423 6.423 9 N -0.365 5.365 10 C 0.003 3.997 11 C -0.064 4.064 12 C -0.186 4.186 13 C -0.186 4.186 14 C -0.040 4.040 15 C -0.549 4.549 16 H 0.096 0.904 17 C -0.134 4.134 18 N -0.543 5.543 19 Si 0.702 3.298 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.190 1.190 23 H 0.097 0.903 24 H 0.083 0.917 25 H 0.124 0.876 26 H 0.186 0.814 27 H 0.166 0.834 28 H 0.235 0.765 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.049 0.951 32 H 0.092 0.908 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.092 0.908 36 H 0.049 0.951 37 H 0.037 0.963 38 H 0.032 0.968 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.207 24.950 -0.060 25.155 hybrid contribution 0.049 -2.006 0.006 2.006 sum -3.157 22.944 -0.054 23.160 Atomic orbital electron populations 1.20643 0.86761 1.04360 1.03588 1.24524 1.01822 0.96706 1.02923 1.83013 0.95264 1.07729 1.70854 1.25374 1.02194 0.97177 1.12257 1.21263 0.94664 0.96419 1.00947 1.20248 0.92698 0.94017 1.11979 1.17556 0.86220 0.83697 0.76608 1.90713 1.14500 1.86151 1.50952 1.46031 1.10004 1.06301 1.74157 1.21661 0.96795 0.79381 1.01835 1.20698 0.93960 0.95956 0.95764 1.21779 1.00591 0.99425 0.96832 1.21778 1.00585 0.99401 0.96847 1.19589 0.97057 0.90765 0.96544 1.21080 0.93642 0.89742 1.50425 0.90398 1.24997 0.96743 0.96966 0.94719 1.69899 1.31271 1.01803 1.51346 0.86859 0.86154 0.78254 0.78511 1.20366 1.21504 1.18978 0.90262 0.91709 0.87596 0.81431 0.83406 0.76521 0.91708 0.91708 0.95073 0.90836 0.93354 0.93351 0.90833 0.95077 0.96338 0.96793 0.92792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.02 9.60 36.01 0.35 -0.67 16 2 C -0.14 -1.59 6.34 -35.11 -0.22 -1.81 16 3 S 0.17 1.41 22.97 -107.50 -2.47 -1.06 16 4 C -0.24 -1.98 11.12 28.86 0.32 -1.66 16 5 C -0.10 -1.04 9.91 -39.02 -0.39 -1.43 16 6 C -0.17 -2.19 5.98 -104.63 -0.63 -2.81 16 7 C 0.57 8.77 7.79 -12.62 -0.10 8.68 16 8 O -0.54 -9.81 14.06 5.25 0.07 -9.73 16 9 N -0.71 -10.33 4.94 -61.45 -0.30 -10.63 16 10 C 0.13 2.13 4.56 -4.04 -0.02 2.11 16 11 C -0.06 -1.16 0.54 -154.51 -0.08 -1.24 16 12 C -0.13 -2.22 8.05 37.16 0.30 -1.93 16 13 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 14 C 0.00 -0.04 3.11 -27.88 -0.09 -0.13 16 15 C -0.51 -13.63 8.20 -34.44 -0.28 -13.91 16 16 H 0.08 2.19 5.92 -52.49 -0.31 1.88 16 17 C 0.07 1.88 5.47 -17.82 -0.10 1.79 16 18 N -0.90 -27.18 13.96 55.43 0.77 -26.41 16 19 Si 0.87 21.49 27.47 -169.99 -4.67 16.82 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 23 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.11 1.38 5.94 -51.93 -0.31 1.07 16 26 H 0.17 0.98 8.06 -52.48 -0.42 0.55 16 27 H 0.15 1.23 7.10 -52.49 -0.37 0.86 16 28 H 0.40 4.94 4.71 -40.82 -0.19 4.75 16 29 H 0.06 1.15 8.14 -51.92 -0.42 0.72 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 32 H 0.07 1.42 6.62 -51.93 -0.34 1.08 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 1.42 6.62 -51.93 -0.34 1.08 16 36 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 37 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 38 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 39 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 323.48 15.07 4.87 4.87 Total: -1.00 -30.94 323.48 -7.83 -38.77 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -5.48 Total: 2.31 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -0.64 Total: -14.94 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 0.47 Total: -37.04 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.07 Total: -9.73 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Atomic # 16 Polarization: 1.41 SS G_CDS: -2.47 Total: -1.06 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.94 -7.83 -38.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451773041.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.034 kcal (2) G-P(sol) polarization free energy of solvation -30.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds