Wall clock time and date at job start Tue Mar 31 2020 06:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47020 * 2 1 4 4 C 1.50703 * 109.46753 * 240.00128 * 2 1 3 5 5 H 1.08003 * 119.99680 * 241.34255 * 4 2 1 6 6 C 1.37875 * 120.00116 * 61.34831 * 4 2 1 7 7 N 1.31515 * 120.00147 * 193.97147 * 6 4 2 8 8 Si 1.86802 * 119.99966 * 13.97295 * 6 4 2 9 9 H 1.48498 * 109.47118 * 84.55260 * 8 6 4 10 10 H 1.48503 * 109.47156 * 204.54755 * 8 6 4 11 11 H 1.48493 * 109.47216 * 324.54856 * 8 6 4 12 12 C 1.52997 * 109.46866 * 120.00143 * 2 1 3 13 13 N 1.46499 * 109.47403 * 299.99820 * 12 2 1 14 14 C 1.34769 * 119.99852 * 180.02562 * 13 12 2 15 15 O 1.21276 * 120.00243 * 359.97438 * 14 13 12 16 16 C 1.50706 * 119.99842 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47280 * 179.97438 * 16 14 13 18 18 C 1.50695 * 109.46968 * 180.02562 * 17 16 14 19 19 C 1.33386 * 125.20606 * 90.00135 * 18 17 16 20 20 C 1.38426 * 114.92496 * 179.97438 * 19 18 17 21 21 C 1.33389 * 114.91740 * 0.02562 * 20 19 18 22 22 S 1.75887 * 125.19994 * 269.68833 * 18 17 16 23 23 H 1.08994 * 109.47345 * 309.36697 * 1 2 3 24 24 H 1.09007 * 109.47333 * 69.37076 * 1 2 3 25 25 H 1.09000 * 109.47135 * 189.36402 * 1 2 3 26 26 H 1.08994 * 109.47171 * 180.02562 * 3 2 1 27 27 H 1.09007 * 109.47309 * 300.00051 * 3 2 1 28 28 H 1.09003 * 109.47156 * 60.00043 * 3 2 1 29 29 H 0.96997 * 120.00549 * 179.97438 * 7 6 4 30 30 H 1.09007 * 109.46728 * 179.97438 * 12 2 1 31 31 H 1.08998 * 109.47161 * 60.00166 * 12 2 1 32 32 H 0.96998 * 119.99258 * 0.02562 * 13 12 2 33 33 H 1.08998 * 109.47193 * 59.99469 * 16 14 13 34 34 H 1.09002 * 109.46957 * 300.00111 * 16 14 13 35 35 H 1.08998 * 109.47277 * 59.99722 * 17 16 14 36 36 H 1.08998 * 109.46909 * 299.99982 * 17 16 14 37 37 H 1.07998 * 122.53989 * 359.95412 * 19 18 17 38 38 H 1.07991 * 122.54245 * 180.02562 * 20 19 18 39 39 H 1.08004 * 125.20550 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6352 -1.6010 -1.1316 6 6 1.7223 -0.2233 -2.4826 7 7 1.9157 -0.9725 -3.5461 8 14 1.0275 1.5007 -2.6684 9 1 2.1416 2.4817 -2.7084 10 1 0.2469 1.5866 -3.9288 11 1 0.1417 1.8043 -1.5159 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8777 -0.4910 3.6694 15 8 2.5749 -1.4770 3.7807 16 6 1.3749 0.2191 4.9000 17 6 1.8849 -0.5021 6.1492 18 6 1.3816 0.2076 7.3796 19 6 0.2354 -0.0602 8.0070 20 6 -0.0177 0.7237 9.1195 21 6 0.9229 1.6284 9.3952 22 16 2.2196 1.5105 8.2126 23 1 -0.3634 0.6518 0.7944 24 1 -0.3634 0.3621 -0.9618 25 1 -0.3633 -1.0140 0.1672 26 1 3.1299 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6973 -0.6300 -4.4269 30 1 3.1300 -0.7217 1.2490 31 1 1.6766 -1.7489 1.2492 32 1 0.9938 0.7577 2.3563 33 1 0.2849 0.2184 4.9000 34 1 1.7375 1.2470 4.8999 35 1 2.9749 -0.5018 6.1493 36 1 1.5219 -1.5299 6.1489 37 1 -0.4441 -0.8300 7.6721 38 1 -0.9090 0.6113 9.7187 39 1 0.8952 2.3234 10.2215 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457984453.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:55 Heat of formation + Delta-G solvation = -4.685219 kcal Electronic energy + Delta-G solvation = -19317.526343 eV Core-core repulsion = 16352.001655 eV Total energy + Delta-G solvation = -2965.524689 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.55371 -38.11687 -36.78799 -33.74111 -33.31922 -31.51094 -29.10735 -26.46287 -26.28163 -25.15212 -24.38658 -22.56551 -20.05551 -19.45306 -19.14886 -17.54409 -16.61615 -16.09539 -15.78225 -15.41823 -15.30329 -15.00631 -14.03005 -13.75951 -13.33390 -13.16050 -12.94390 -12.92114 -12.61673 -12.30845 -12.28595 -12.19779 -12.05577 -12.00862 -11.32477 -11.17576 -10.85797 -10.45642 -10.33608 -10.19067 -10.08705 -9.60008 -9.14196 -8.84881 -8.70852 -8.69868 -8.55997 -8.45901 -6.16383 -4.13819 0.76488 1.41061 1.78702 2.51311 2.93976 3.22474 3.29460 3.37255 3.61013 4.33850 4.58514 4.82051 4.85871 4.95757 5.14193 5.15459 5.32265 5.36762 5.50407 5.65147 5.76487 5.92666 5.96979 6.03017 6.04211 6.07806 6.28197 6.33528 6.45850 6.50572 6.60705 6.67354 6.76956 6.94672 7.20022 7.40842 7.70355 7.91082 8.42698 8.57721 8.89022 9.47430 10.96757 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.038000 B = 0.003060 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.655896 B = 9147.384180 C = 9376.705685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.028 3.972 3 C -0.148 4.148 4 C -0.514 4.514 5 H 0.076 0.924 6 C 0.075 3.925 7 N -0.891 5.891 8 Si 0.886 3.114 9 H -0.286 1.286 10 H -0.305 1.305 11 H -0.249 1.249 12 C 0.141 3.859 13 N -0.723 5.723 14 C 0.505 3.495 15 O -0.549 6.549 16 C -0.137 4.137 17 C -0.034 4.034 18 C -0.165 4.165 19 C -0.144 4.144 20 C -0.132 4.132 21 C -0.221 4.221 22 S 0.094 5.906 23 H 0.022 0.978 24 H 0.056 0.944 25 H 0.047 0.953 26 H 0.053 0.947 27 H 0.041 0.959 28 H 0.029 0.971 29 H 0.265 0.735 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.397 0.603 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.326 7.007 23.099 24.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.027 3.973 3 C -0.205 4.205 4 C -0.552 4.552 5 H 0.094 0.906 6 C -0.127 4.127 7 N -0.528 5.528 8 Si 0.718 3.282 9 H -0.213 1.213 10 H -0.234 1.234 11 H -0.175 1.175 12 C 0.019 3.981 13 N -0.373 5.373 14 C 0.291 3.709 15 O -0.428 6.428 16 C -0.177 4.177 17 C -0.074 4.074 18 C -0.282 4.282 19 C -0.174 4.174 20 C -0.163 4.163 21 C -0.356 4.356 22 S 0.358 5.642 23 H 0.041 0.959 24 H 0.075 0.925 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.060 0.940 28 H 0.048 0.952 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.231 0.769 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.101 0.899 36 H 0.110 0.890 37 H 0.158 0.842 38 H 0.156 0.844 39 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -2.463 7.031 22.747 23.936 hybrid contribution -1.980 0.729 -0.082 2.111 sum -4.442 7.760 22.665 24.365 Atomic orbital electron populations 1.22296 0.97854 0.99824 0.99964 1.18718 0.92501 0.92249 0.93822 1.22361 1.01204 0.98326 0.98573 1.20725 1.34094 1.12340 0.88012 0.90552 1.24977 0.94666 0.97310 0.95782 1.69948 1.48154 1.35933 0.98741 0.87291 0.79343 0.85547 0.76000 1.21350 1.23390 1.17517 1.21508 0.98600 0.95819 0.82186 1.46331 1.52871 1.31892 1.06237 1.20504 0.80743 0.84843 0.84836 1.90690 1.38455 1.26639 1.86985 1.21684 1.02831 1.00750 0.92460 1.19881 1.01595 0.98577 0.87322 1.24610 0.99151 1.01987 1.02499 1.20176 0.97739 1.02654 0.96852 1.20180 1.00626 0.96798 0.98664 1.25605 0.98960 1.06053 1.05016 1.84390 1.23446 1.34040 1.22370 0.95939 0.92525 0.93412 0.92793 0.94038 0.95167 0.92535 0.92012 0.91906 0.76879 0.88773 0.89012 0.89859 0.89021 0.84197 0.84419 0.82094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 7.53 37.16 0.28 -2.57 16 2 C 0.03 0.61 0.50 -155.66 -0.08 0.53 16 3 C -0.15 -2.95 7.52 37.15 0.28 -2.67 16 4 C -0.51 -13.74 8.62 -34.44 -0.30 -14.04 16 5 H 0.08 2.25 7.99 -52.48 -0.42 1.83 16 6 C 0.08 2.09 5.32 -17.82 -0.09 1.99 16 7 N -0.89 -26.59 13.96 55.43 0.77 -25.81 16 8 Si 0.89 20.95 22.79 -169.99 -3.87 17.08 16 9 H -0.29 -6.75 7.10 56.52 0.40 -6.34 16 10 H -0.31 -7.40 7.11 56.52 0.40 -7.00 16 11 H -0.25 -5.34 4.65 56.52 0.26 -5.07 16 12 C 0.14 2.79 4.49 -4.04 -0.02 2.77 16 13 N -0.72 -11.42 5.00 -60.29 -0.30 -11.72 16 14 C 0.51 7.76 7.83 -10.99 -0.09 7.67 16 15 O -0.55 -10.57 15.98 5.56 0.09 -10.48 16 16 C -0.14 -1.49 5.68 -27.88 -0.16 -1.64 16 17 C -0.03 -0.37 5.00 -27.89 -0.14 -0.51 16 18 C -0.17 -1.64 5.76 -36.01 -0.21 -1.85 16 19 C -0.14 -1.32 10.05 -41.21 -0.41 -1.73 16 20 C -0.13 -1.09 10.18 -41.21 -0.42 -1.51 16 21 C -0.22 -1.79 11.23 29.04 0.33 -1.46 16 22 S 0.09 0.86 23.33 -107.50 -2.51 -1.64 16 23 H 0.02 0.37 7.13 -51.93 -0.37 0.00 16 24 H 0.06 1.21 4.30 -51.92 -0.22 0.99 16 25 H 0.05 0.95 8.12 -51.93 -0.42 0.53 16 26 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.04 0.88 2.25 -51.93 -0.12 0.76 16 28 H 0.03 0.49 6.86 -51.93 -0.36 0.14 16 29 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.06 1.30 8.14 -51.92 -0.42 0.88 16 31 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.40 5.39 6.26 -40.82 -0.26 5.14 16 33 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.08 0.97 8.10 -51.93 -0.42 0.55 16 36 H 0.09 1.03 8.10 -51.93 -0.42 0.61 16 37 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 38 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 39 H 0.16 0.94 8.06 -52.48 -0.42 0.52 16 LS Contribution 321.93 15.07 4.85 4.85 Total: -1.00 -30.87 321.93 -7.66 -38.53 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -5.66 Total: 4.20 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: -1.03 Total: -15.01 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 0.47 Total: -37.54 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.09 Total: -10.48 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -3.87 Total: 17.08 kcal Atomic # 16 Polarization: 0.86 SS G_CDS: -2.51 Total: -1.64 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.87 -7.66 -38.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457984453.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.847 kcal (2) G-P(sol) polarization free energy of solvation -30.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds