Wall clock time and date at job start Tue Mar 31 2020 06:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47020 * 2 1 4 4 C 1.50703 * 109.46753 * 240.00128 * 2 1 3 5 5 H 1.08003 * 119.99680 * 241.34255 * 4 2 1 6 6 C 1.37875 * 120.00116 * 61.34831 * 4 2 1 7 7 N 1.31515 * 120.00147 * 193.97147 * 6 4 2 8 8 Si 1.86802 * 119.99966 * 13.97295 * 6 4 2 9 9 H 1.48498 * 109.47118 * 84.55260 * 8 6 4 10 10 H 1.48503 * 109.47156 * 204.54755 * 8 6 4 11 11 H 1.48493 * 109.47216 * 324.54856 * 8 6 4 12 12 C 1.52997 * 109.46866 * 120.00143 * 2 1 3 13 13 N 1.46499 * 109.47403 * 299.99820 * 12 2 1 14 14 C 1.34769 * 119.99852 * 180.02562 * 13 12 2 15 15 O 1.21276 * 120.00243 * 359.97438 * 14 13 12 16 16 C 1.50706 * 119.99842 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47280 * 179.97438 * 16 14 13 18 18 C 1.50695 * 109.46968 * 180.02562 * 17 16 14 19 19 C 1.33386 * 125.20606 * 90.00135 * 18 17 16 20 20 C 1.38426 * 114.92496 * 179.97438 * 19 18 17 21 21 C 1.33389 * 114.91740 * 0.02562 * 20 19 18 22 22 S 1.75887 * 125.19994 * 269.68833 * 18 17 16 23 23 H 1.08994 * 109.47345 * 309.36697 * 1 2 3 24 24 H 1.09007 * 109.47333 * 69.37076 * 1 2 3 25 25 H 1.09000 * 109.47135 * 189.36402 * 1 2 3 26 26 H 1.08994 * 109.47171 * 180.02562 * 3 2 1 27 27 H 1.09007 * 109.47309 * 300.00051 * 3 2 1 28 28 H 1.09003 * 109.47156 * 60.00043 * 3 2 1 29 29 H 0.96997 * 120.00549 * 179.97438 * 7 6 4 30 30 H 1.09007 * 109.46728 * 179.97438 * 12 2 1 31 31 H 1.08998 * 109.47161 * 60.00166 * 12 2 1 32 32 H 0.96998 * 119.99258 * 0.02562 * 13 12 2 33 33 H 1.08998 * 109.47193 * 59.99469 * 16 14 13 34 34 H 1.09002 * 109.46957 * 300.00111 * 16 14 13 35 35 H 1.08998 * 109.47277 * 59.99722 * 17 16 14 36 36 H 1.08998 * 109.46909 * 299.99982 * 17 16 14 37 37 H 1.07998 * 122.53989 * 359.95412 * 19 18 17 38 38 H 1.07991 * 122.54245 * 180.02562 * 20 19 18 39 39 H 1.08004 * 125.20550 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6352 -1.6010 -1.1316 6 6 1.7223 -0.2233 -2.4826 7 7 1.9157 -0.9725 -3.5461 8 14 1.0275 1.5007 -2.6684 9 1 2.1416 2.4817 -2.7084 10 1 0.2469 1.5866 -3.9288 11 1 0.1417 1.8043 -1.5159 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8777 -0.4910 3.6694 15 8 2.5749 -1.4770 3.7807 16 6 1.3749 0.2191 4.9000 17 6 1.8849 -0.5021 6.1492 18 6 1.3816 0.2076 7.3796 19 6 0.2354 -0.0602 8.0070 20 6 -0.0177 0.7237 9.1195 21 6 0.9229 1.6284 9.3952 22 16 2.2196 1.5105 8.2126 23 1 -0.3634 0.6518 0.7944 24 1 -0.3634 0.3621 -0.9618 25 1 -0.3633 -1.0140 0.1672 26 1 3.1299 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6973 -0.6300 -4.4269 30 1 3.1300 -0.7217 1.2490 31 1 1.6766 -1.7489 1.2492 32 1 0.9938 0.7577 2.3563 33 1 0.2849 0.2184 4.9000 34 1 1.7375 1.2470 4.8999 35 1 2.9749 -0.5018 6.1493 36 1 1.5219 -1.5299 6.1489 37 1 -0.4441 -0.8300 7.6721 38 1 -0.9090 0.6113 9.7187 39 1 0.8952 2.3234 10.2215 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457984453.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:55 Heat of formation + Delta-G solvation = -24.942329 kcal Electronic energy + Delta-G solvation = -19318.404758 eV Core-core repulsion = 16352.001655 eV Total energy + Delta-G solvation = -2966.403103 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.86325 -38.86984 -38.35450 -34.97738 -34.62228 -33.40254 -29.96159 -28.02510 -27.64341 -26.99130 -25.50129 -23.38802 -21.33475 -20.90400 -20.08912 -18.56579 -18.04311 -17.61826 -16.94853 -16.72520 -16.59467 -16.22193 -15.32619 -15.07559 -14.84113 -14.36305 -14.31970 -14.12137 -13.94816 -13.75182 -13.58570 -13.17028 -13.02703 -12.84698 -12.82127 -12.39386 -12.14175 -11.97427 -11.94823 -11.75882 -11.55861 -11.10402 -10.86159 -10.61760 -10.38448 -9.97335 -9.53106 -9.36672 -8.30493 -6.32443 0.11122 0.75330 1.15052 1.36880 1.38066 1.51364 1.71535 1.87647 2.34840 2.36363 3.05793 3.68674 3.98611 4.07496 4.11272 4.27303 4.32428 4.34969 4.42450 4.58710 4.70852 4.75979 4.77280 4.84380 4.87491 4.92109 4.96220 5.07031 5.10690 5.19684 5.29107 5.43917 5.45060 5.56238 5.64411 5.72850 5.80408 6.30198 6.66778 6.73272 7.32406 7.35339 8.86914 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.038000 B = 0.003060 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.655896 B = 9147.384180 C = 9376.705685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.027 3.973 3 C -0.147 4.147 4 C -0.520 4.520 5 H 0.025 0.975 6 C 0.015 3.985 7 N -0.948 5.948 8 Si 0.946 3.054 9 H -0.282 1.282 10 H -0.316 1.316 11 H -0.201 1.201 12 C 0.156 3.844 13 N -0.712 5.712 14 C 0.504 3.496 15 O -0.593 6.593 16 C -0.122 4.122 17 C -0.030 4.030 18 C -0.182 4.182 19 C -0.143 4.143 20 C -0.141 4.141 21 C -0.216 4.216 22 S 0.078 5.922 23 H 0.068 0.932 24 H 0.044 0.956 25 H 0.039 0.961 26 H 0.045 0.955 27 H 0.035 0.965 28 H 0.076 0.924 29 H 0.264 0.736 30 H 0.040 0.960 31 H 0.038 0.962 32 H 0.413 0.587 33 H 0.120 0.880 34 H 0.114 0.886 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.151 0.849 38 H 0.160 0.840 39 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.535 10.065 25.890 28.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.026 3.974 3 C -0.204 4.204 4 C -0.558 4.558 5 H 0.044 0.956 6 C -0.182 4.182 7 N -0.587 5.587 8 Si 0.775 3.225 9 H -0.209 1.209 10 H -0.245 1.245 11 H -0.125 1.125 12 C 0.032 3.968 13 N -0.364 5.364 14 C 0.293 3.707 15 O -0.474 6.474 16 C -0.162 4.162 17 C -0.069 4.069 18 C -0.299 4.299 19 C -0.173 4.173 20 C -0.171 4.171 21 C -0.351 4.351 22 S 0.341 5.659 23 H 0.087 0.913 24 H 0.063 0.937 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.053 0.947 28 H 0.095 0.905 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.251 0.749 33 H 0.139 0.861 34 H 0.132 0.868 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.168 0.832 38 H 0.177 0.823 39 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -4.690 10.116 25.587 27.911 hybrid contribution -1.223 -0.365 -0.861 1.540 sum -5.913 9.751 24.726 27.229 Atomic orbital electron populations 1.22218 0.95948 1.00661 1.00978 1.18652 0.93863 0.93110 0.91748 1.22297 1.00934 0.96784 1.00400 1.21065 1.32930 1.11076 0.90731 0.95627 1.25893 0.95392 1.01745 0.95171 1.70117 1.50756 1.38393 0.99447 0.86314 0.79426 0.79713 0.77034 1.20935 1.24533 1.12500 1.21001 0.97215 0.94977 0.83583 1.46090 1.53056 1.32140 1.05131 1.21329 0.79559 0.84201 0.85659 1.90682 1.40381 1.28809 1.87569 1.21668 1.04199 1.00896 0.89477 1.19742 1.00669 0.98380 0.88138 1.24470 0.99841 1.02877 1.02699 1.20432 0.97465 1.02617 0.96823 1.20447 1.01506 0.96538 0.98629 1.25936 0.98005 1.06177 1.04964 1.84448 1.24313 1.33983 1.23150 0.91278 0.93669 0.94133 0.93614 0.94689 0.90510 0.92667 0.94204 0.94309 0.74949 0.86145 0.86831 0.91398 0.89978 0.83182 0.82266 0.79911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.20 7.53 71.98 0.54 -4.66 16 2 C 0.03 1.15 0.50 -52.93 -0.03 1.12 16 3 C -0.15 -5.39 7.52 71.98 0.54 -4.85 16 4 C -0.52 -28.73 8.62 25.60 0.22 -28.51 16 5 H 0.03 1.61 7.99 -2.91 -0.02 1.59 16 6 C 0.02 0.86 5.32 84.65 0.45 1.31 16 7 N -0.95 -59.03 13.96 21.45 0.30 -58.73 16 8 Si 0.95 42.42 22.79 68.60 1.56 43.98 16 9 H -0.28 -12.41 7.10 99.48 0.71 -11.70 16 10 H -0.32 -14.64 7.11 99.48 0.71 -13.94 16 11 H -0.20 -7.51 4.65 99.48 0.46 -7.05 16 12 C 0.16 6.17 4.49 86.38 0.39 6.56 16 13 N -0.71 -20.70 5.00 -463.07 -2.32 -23.01 16 14 C 0.50 14.62 7.83 87.66 0.69 15.31 16 15 O -0.59 -22.92 15.98 -3.02 -0.05 -22.96 16 16 C -0.12 -2.29 5.68 29.85 0.17 -2.12 16 17 C -0.03 -0.60 5.00 29.85 0.15 -0.45 16 18 C -0.18 -3.22 5.76 24.59 0.14 -3.08 16 19 C -0.14 -2.22 10.05 21.22 0.21 -2.01 16 20 C -0.14 -1.87 10.18 21.22 0.22 -1.65 16 21 C -0.22 -2.84 11.23 66.72 0.75 -2.09 16 22 S 0.08 1.27 23.33 -56.49 -1.32 -0.05 16 23 H 0.07 1.91 7.13 -2.39 -0.02 1.90 16 24 H 0.04 1.77 4.30 -2.38 -0.01 1.76 16 25 H 0.04 1.53 8.12 -2.39 -0.02 1.51 16 26 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.03 1.34 2.25 -2.38 -0.01 1.33 16 28 H 0.08 2.09 6.86 -2.39 -0.02 2.08 16 29 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 30 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 31 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.41 9.21 6.26 -92.71 -0.58 8.63 16 33 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.07 1.57 8.10 -2.39 -0.02 1.55 16 36 H 0.08 1.79 8.10 -2.39 -0.02 1.77 16 37 H 0.15 1.95 8.06 -2.91 -0.02 1.92 16 38 H 0.16 1.37 8.06 -2.92 -0.02 1.35 16 39 H 0.18 1.50 8.06 -2.91 -0.02 1.47 16 Total: -1.00 -71.37 321.93 2.85 -68.53 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: 0.23 Total: 17.37 kcal Atomic # 6 Polarization: -29.56 SS G_CDS: 4.44 Total: -25.12 kcal Atomic # 7 Polarization: -79.72 SS G_CDS: -2.02 Total: -81.74 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -0.05 Total: -22.96 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 1.56 Total: 43.98 kcal Atomic # 16 Polarization: 1.27 SS G_CDS: -1.32 Total: -0.05 kcal Total: -71.37 2.85 -68.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457984453.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.583 kcal (2) G-P(sol) polarization free energy of solvation -71.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds