Wall clock time and date at job start Tue Mar 31 2020 06:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47035 * 2 1 4 4 C 1.50692 * 109.47347 * 239.99820 * 2 1 3 5 5 H 1.08003 * 120.00321 * 241.34820 * 4 2 1 6 6 C 1.37886 * 120.00125 * 61.34757 * 4 2 1 7 7 N 1.31515 * 120.00074 * 193.97672 * 6 4 2 8 8 Si 1.86801 * 119.99625 * 13.97721 * 6 4 2 9 9 H 1.48498 * 109.47026 * 84.54840 * 8 6 4 10 10 H 1.48495 * 109.47026 * 204.54826 * 8 6 4 11 11 H 1.48497 * 109.47178 * 324.55093 * 8 6 4 12 12 C 1.52998 * 109.46899 * 119.99788 * 2 1 3 13 13 N 1.46499 * 109.47571 * 300.00009 * 12 2 1 14 14 C 1.34773 * 120.00737 * 179.97438 * 13 12 2 15 15 O 1.21702 * 119.99344 * 0.02562 * 14 13 12 16 16 C 1.46676 * 120.00537 * 179.97438 * 14 13 12 17 17 C 1.37872 * 126.23275 * 180.13177 * 16 14 13 18 18 C 1.39834 * 107.08161 * 180.27546 * 17 16 14 19 19 C 1.35454 * 107.86769 * 359.76036 * 18 17 16 20 20 N 1.48023 * 125.56518 * 179.97438 * 19 18 17 21 21 O 1.21802 * 119.99712 * 180.02562 * 20 19 18 22 22 O 1.21803 * 120.00256 * 0.05019 * 20 19 18 23 23 N 1.35534 * 108.86980 * 0.02562 * 19 18 17 24 24 H 0.96997 * 125.67567 * 179.97438 * 23 19 18 25 25 H 1.09002 * 109.47334 * 309.36795 * 1 2 3 26 26 H 1.09004 * 109.46753 * 69.36918 * 1 2 3 27 27 H 1.08994 * 109.47258 * 189.36794 * 1 2 3 28 28 H 1.08999 * 109.46682 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47023 * 299.99920 * 3 2 1 30 30 H 1.09003 * 109.47399 * 60.00069 * 3 2 1 31 31 H 0.97003 * 119.99833 * 180.02562 * 7 6 4 32 32 H 1.09008 * 109.47219 * 179.97438 * 12 2 1 33 33 H 1.08998 * 109.47260 * 60.00216 * 12 2 1 34 34 H 0.97000 * 119.99580 * 359.97438 * 13 12 2 35 35 H 1.07998 * 126.46170 * 0.02562 * 17 16 14 36 36 H 1.08002 * 126.06774 * 179.72521 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6352 -1.6010 -1.1314 6 6 1.7223 -0.2234 -2.4826 7 7 1.9158 -0.9726 -3.5459 8 14 1.0276 1.5006 -2.6684 9 1 2.1417 2.4816 -2.7083 10 1 0.2471 1.5865 -3.9288 11 1 0.1418 1.8043 -1.5159 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0306 2.4454 14 6 1.8767 -0.4913 3.6696 15 8 2.5763 -1.4808 3.7812 16 6 1.3882 0.2005 4.8672 17 6 1.6425 -0.1555 6.1746 18 6 0.9806 0.7691 6.9883 19 6 0.3519 1.6573 6.1817 20 7 -0.4669 2.8036 6.6363 21 8 -0.9888 3.5411 5.8195 22 8 -0.6184 3.0096 7.8272 23 7 0.5940 1.3245 4.8904 24 1 0.2601 1.7975 4.1121 25 1 -0.3634 0.6518 0.7945 26 1 -0.3633 0.3621 -0.9618 27 1 -0.3633 -1.0139 0.1673 28 1 3.1299 1.4425 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6981 -0.6298 -4.4269 32 1 3.1300 -0.7216 1.2491 33 1 1.6766 -1.7489 1.2493 34 1 0.9942 0.7583 2.3564 35 1 2.2373 -0.9933 6.5076 36 1 0.9716 0.7739 8.0683 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457994186.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:50 Heat of formation + Delta-G solvation = 22.444648 kcal Electronic energy + Delta-G solvation = -21786.291560 eV Core-core repulsion = 18275.650096 eV Total energy + Delta-G solvation = -3510.641464 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.86595 -41.63863 -39.41276 -36.99875 -36.94394 -33.82588 -32.10327 -31.65888 -30.95566 -27.33280 -26.58810 -25.85765 -25.00120 -22.74725 -21.56027 -20.99878 -20.23368 -19.37902 -18.78657 -18.01208 -18.01129 -16.30037 -15.75278 -15.66011 -15.35985 -14.96870 -14.59110 -14.39690 -13.73450 -13.43115 -13.38028 -13.08140 -12.80109 -12.40433 -12.22575 -12.00444 -11.70327 -11.56830 -11.53264 -10.66305 -10.57688 -10.35518 -10.24822 -10.22033 -10.00222 -9.41923 -9.31025 -8.93625 -8.85435 -8.60458 -6.27709 -4.26484 -0.38703 0.61379 1.02653 1.90579 2.30475 2.98259 2.98912 3.12617 3.19563 3.29150 4.21031 4.22853 4.35368 4.49796 4.95194 5.01962 5.28251 5.46047 5.60599 5.66978 5.81534 5.82550 5.95346 6.12225 6.22080 6.25432 6.33858 6.37734 6.42862 6.48884 6.72298 7.00533 7.22245 7.25127 7.38413 7.54719 7.96576 8.29876 8.76723 9.35166 10.85092 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.024867 B = 0.004129 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.711277 B = 6779.412175 C = 7696.845331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.029 3.971 3 C -0.150 4.150 4 C -0.517 4.517 5 H 0.078 0.922 6 C 0.078 3.922 7 N -0.887 5.887 8 Si 0.884 3.116 9 H -0.285 1.285 10 H -0.303 1.303 11 H -0.251 1.251 12 C 0.140 3.860 13 N -0.713 5.713 14 C 0.575 3.425 15 O -0.513 6.513 16 C 0.048 3.952 17 C -0.121 4.121 18 C -0.087 4.087 19 C 0.065 3.935 20 N 0.057 4.943 21 O -0.173 6.173 22 O -0.135 6.135 23 N -0.512 5.512 24 H 0.433 0.567 25 H 0.018 0.982 26 H 0.059 0.941 27 H 0.049 0.951 28 H 0.056 0.944 29 H 0.045 0.955 30 H 0.025 0.975 31 H 0.266 0.734 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.393 0.607 35 H 0.177 0.823 36 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.028 5.183 17.974 18.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.027 3.973 3 C -0.206 4.206 4 C -0.555 4.555 5 H 0.096 0.904 6 C -0.126 4.126 7 N -0.523 5.523 8 Si 0.717 3.283 9 H -0.212 1.212 10 H -0.232 1.232 11 H -0.177 1.177 12 C 0.018 3.982 13 N -0.363 5.363 14 C 0.358 3.642 15 O -0.388 6.388 16 C -0.072 4.072 17 C -0.146 4.146 18 C -0.116 4.116 19 C -0.132 4.132 20 N 0.574 4.426 21 O -0.383 6.383 22 O -0.352 6.352 23 N -0.113 5.113 24 H 0.273 0.727 25 H 0.037 0.963 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.044 0.956 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.227 0.773 35 H 0.194 0.806 36 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -2.219 4.000 17.408 17.999 hybrid contribution -1.059 2.044 -0.685 2.402 sum -3.277 6.044 16.723 18.081 Atomic orbital electron populations 1.22331 0.97780 0.99900 1.00132 1.18741 0.92556 0.92283 0.93692 1.22394 1.01426 0.98229 0.98588 1.20653 1.34535 1.12527 0.87809 0.90351 1.24966 0.94557 0.97266 0.95772 1.69938 1.47649 1.35885 0.98811 0.87307 0.79364 0.85481 0.76166 1.21225 1.23160 1.17676 1.21718 0.99145 0.96059 0.81254 1.46335 1.52187 1.31488 1.06287 1.16879 0.81401 0.84258 0.81649 1.90909 1.37320 1.24831 1.85709 1.21403 0.98923 0.89377 0.97540 1.21517 1.02701 1.01435 0.88974 1.20930 0.96898 0.92751 1.01035 1.20826 1.09511 0.96483 0.86365 1.42603 0.98981 1.00008 1.00974 1.94609 1.49419 1.43938 1.50336 1.94589 1.64923 1.76519 0.99156 1.41770 1.39526 1.23465 1.06588 0.72654 0.96315 0.92188 0.93168 0.92514 0.93714 0.95617 0.92370 0.91096 0.91000 0.77295 0.80598 0.80816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 7.53 37.16 0.28 -2.42 16 2 C 0.03 0.57 0.50 -155.66 -0.08 0.49 16 3 C -0.15 -2.78 7.52 37.16 0.28 -2.50 16 4 C -0.52 -13.10 8.62 -34.44 -0.30 -13.39 16 5 H 0.08 2.18 7.99 -52.48 -0.42 1.76 16 6 C 0.08 2.07 5.32 -17.82 -0.09 1.97 16 7 N -0.89 -25.55 13.96 55.43 0.77 -24.77 16 8 Si 0.88 20.14 22.79 -169.99 -3.87 16.27 16 9 H -0.28 -6.48 7.10 56.52 0.40 -6.08 16 10 H -0.30 -7.13 7.11 56.52 0.40 -6.73 16 11 H -0.25 -5.14 4.65 56.52 0.26 -4.88 16 12 C 0.14 2.47 4.49 -4.04 -0.02 2.45 16 13 N -0.71 -9.92 5.00 -61.62 -0.31 -10.23 16 14 C 0.57 7.93 7.79 -12.86 -0.10 7.83 16 15 O -0.51 -8.75 16.88 5.19 0.09 -8.67 16 16 C 0.05 0.51 7.06 -81.98 -0.58 -0.06 16 17 C -0.12 -1.11 10.65 -39.12 -0.42 -1.53 16 18 C -0.09 -0.74 10.46 -39.98 -0.42 -1.16 16 19 C 0.06 0.66 8.05 -144.06 -1.16 -0.50 16 20 N 0.06 0.67 4.45 33.00 0.15 0.81 16 21 O -0.17 -2.20 19.24 -29.46 -0.57 -2.77 16 22 O -0.14 -1.61 19.00 -29.46 -0.56 -2.17 16 23 N -0.51 -4.90 5.97 -6.49 -0.04 -4.94 16 24 H 0.43 3.48 8.19 -40.82 -0.33 3.14 16 25 H 0.02 0.28 7.13 -51.93 -0.37 -0.09 16 26 H 0.06 1.22 4.30 -51.93 -0.22 1.00 16 27 H 0.05 0.93 8.12 -51.93 -0.42 0.51 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.04 0.90 2.25 -51.93 -0.12 0.78 16 30 H 0.02 0.38 6.86 -51.93 -0.36 0.02 16 31 H 0.27 7.24 8.31 -40.82 -0.34 6.91 16 32 H 0.07 1.32 8.14 -51.92 -0.42 0.89 16 33 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 34 H 0.39 4.63 5.39 -40.82 -0.22 4.41 16 35 H 0.18 1.35 8.06 -52.49 -0.42 0.93 16 36 H 0.17 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 303.23 15.07 4.57 4.57 Total: -1.00 -29.77 303.23 -6.22 -35.99 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -3.85 Total: 4.72 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: -2.60 Total: -8.82 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: 0.57 Total: -39.14 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: -1.04 Total: -13.61 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -3.87 Total: 16.27 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.77 -6.22 -35.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457994186.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.440 kcal (2) G-P(sol) polarization free energy of solvation -29.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds