Wall clock time and date at job start Tue Mar 31 2020 06:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47035 * 2 1 4 4 C 1.50692 * 109.47347 * 239.99820 * 2 1 3 5 5 H 1.08003 * 120.00321 * 241.34820 * 4 2 1 6 6 C 1.37886 * 120.00125 * 61.34757 * 4 2 1 7 7 N 1.31515 * 120.00074 * 193.97672 * 6 4 2 8 8 Si 1.86801 * 119.99625 * 13.97721 * 6 4 2 9 9 H 1.48498 * 109.47026 * 84.54840 * 8 6 4 10 10 H 1.48495 * 109.47026 * 204.54826 * 8 6 4 11 11 H 1.48497 * 109.47178 * 324.55093 * 8 6 4 12 12 C 1.52998 * 109.46899 * 119.99788 * 2 1 3 13 13 N 1.46499 * 109.47571 * 300.00009 * 12 2 1 14 14 C 1.34773 * 120.00737 * 179.97438 * 13 12 2 15 15 O 1.21702 * 119.99344 * 0.02562 * 14 13 12 16 16 C 1.46676 * 120.00537 * 179.97438 * 14 13 12 17 17 C 1.37872 * 126.23275 * 180.13177 * 16 14 13 18 18 C 1.39834 * 107.08161 * 180.27546 * 17 16 14 19 19 C 1.35454 * 107.86769 * 359.76036 * 18 17 16 20 20 N 1.48023 * 125.56518 * 179.97438 * 19 18 17 21 21 O 1.21802 * 119.99712 * 180.02562 * 20 19 18 22 22 O 1.21803 * 120.00256 * 0.05019 * 20 19 18 23 23 N 1.35534 * 108.86980 * 0.02562 * 19 18 17 24 24 H 0.96997 * 125.67567 * 179.97438 * 23 19 18 25 25 H 1.09002 * 109.47334 * 309.36795 * 1 2 3 26 26 H 1.09004 * 109.46753 * 69.36918 * 1 2 3 27 27 H 1.08994 * 109.47258 * 189.36794 * 1 2 3 28 28 H 1.08999 * 109.46682 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47023 * 299.99920 * 3 2 1 30 30 H 1.09003 * 109.47399 * 60.00069 * 3 2 1 31 31 H 0.97003 * 119.99833 * 180.02562 * 7 6 4 32 32 H 1.09008 * 109.47219 * 179.97438 * 12 2 1 33 33 H 1.08998 * 109.47260 * 60.00216 * 12 2 1 34 34 H 0.97000 * 119.99580 * 359.97438 * 13 12 2 35 35 H 1.07998 * 126.46170 * 0.02562 * 17 16 14 36 36 H 1.08002 * 126.06774 * 179.72521 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6352 -1.6010 -1.1314 6 6 1.7223 -0.2234 -2.4826 7 7 1.9158 -0.9726 -3.5459 8 14 1.0276 1.5006 -2.6684 9 1 2.1417 2.4816 -2.7083 10 1 0.2471 1.5865 -3.9288 11 1 0.1418 1.8043 -1.5159 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0306 2.4454 14 6 1.8767 -0.4913 3.6696 15 8 2.5763 -1.4808 3.7812 16 6 1.3882 0.2005 4.8672 17 6 1.6425 -0.1555 6.1746 18 6 0.9806 0.7691 6.9883 19 6 0.3519 1.6573 6.1817 20 7 -0.4669 2.8036 6.6363 21 8 -0.9888 3.5411 5.8195 22 8 -0.6184 3.0096 7.8272 23 7 0.5940 1.3245 4.8904 24 1 0.2601 1.7975 4.1121 25 1 -0.3634 0.6518 0.7945 26 1 -0.3633 0.3621 -0.9618 27 1 -0.3633 -1.0139 0.1673 28 1 3.1299 1.4425 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6981 -0.6298 -4.4269 32 1 3.1300 -0.7216 1.2491 33 1 1.6766 -1.7489 1.2493 34 1 0.9942 0.7583 2.3564 35 1 2.2373 -0.9933 6.5076 36 1 0.9716 0.7739 8.0683 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457994186.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:50 Heat of formation + Delta-G solvation = 2.299674 kcal Electronic energy + Delta-G solvation = -21787.165111 eV Core-core repulsion = 18275.650096 eV Total energy + Delta-G solvation = -3511.515015 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.68567 -42.48734 -40.59721 -38.49008 -37.82691 -35.26287 -33.64986 -32.69550 -31.86891 -28.48129 -28.07323 -27.25259 -26.65550 -23.75714 -22.34998 -21.82549 -21.33810 -20.82512 -19.68591 -19.11683 -18.85038 -18.09385 -17.19907 -16.80487 -16.78573 -15.92187 -15.64396 -15.46030 -14.94026 -14.66354 -14.58942 -14.40655 -14.19676 -14.05161 -13.81782 -13.03917 -12.90351 -12.58560 -12.43988 -12.43678 -12.24915 -12.01609 -11.82894 -11.53869 -11.10428 -10.69202 -10.66014 -10.46117 -10.39162 -10.05635 -8.32981 -6.34932 -1.26317 -0.20283 0.15311 1.15753 1.33548 1.35149 1.48173 1.52534 1.89123 1.96952 2.31520 3.03253 3.39650 3.55894 3.70156 3.98893 4.21192 4.26492 4.32895 4.63761 4.65470 4.74497 4.76097 4.83921 4.88510 4.89706 4.99258 5.01769 5.23501 5.26873 5.45359 5.62800 5.66088 5.73597 6.21935 6.31339 6.34834 6.69848 6.87627 7.30286 8.83883 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.024867 B = 0.004129 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.711277 B = 6779.412175 C = 7696.845331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.027 3.973 3 C -0.150 4.150 4 C -0.518 4.518 5 H 0.033 0.967 6 C 0.019 3.981 7 N -0.944 5.944 8 Si 0.941 3.059 9 H -0.283 1.283 10 H -0.317 1.317 11 H -0.205 1.205 12 C 0.155 3.845 13 N -0.704 5.704 14 C 0.582 3.418 15 O -0.549 6.549 16 C 0.038 3.962 17 C -0.110 4.110 18 C -0.072 4.072 19 C 0.060 3.940 20 N 0.058 4.942 21 O -0.200 6.200 22 O -0.134 6.134 23 N -0.507 5.507 24 H 0.439 0.561 25 H 0.063 0.937 26 H 0.045 0.955 27 H 0.044 0.956 28 H 0.050 0.950 29 H 0.035 0.965 30 H 0.071 0.929 31 H 0.264 0.736 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.407 0.593 35 H 0.192 0.808 36 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.121 7.169 20.883 22.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.025 3.975 3 C -0.207 4.207 4 C -0.556 4.556 5 H 0.051 0.949 6 C -0.179 4.179 7 N -0.583 5.583 8 Si 0.771 3.229 9 H -0.210 1.210 10 H -0.247 1.247 11 H -0.129 1.129 12 C 0.032 3.968 13 N -0.355 5.355 14 C 0.368 3.632 15 O -0.426 6.426 16 C -0.081 4.081 17 C -0.136 4.136 18 C -0.100 4.100 19 C -0.137 4.137 20 N 0.573 4.427 21 O -0.404 6.404 22 O -0.352 6.352 23 N -0.109 5.109 24 H 0.281 0.719 25 H 0.082 0.918 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.244 0.756 35 H 0.209 0.791 36 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -3.352 6.045 20.325 21.468 hybrid contribution -0.636 1.283 -1.473 2.054 sum -3.988 7.328 18.852 20.616 Atomic orbital electron populations 1.22256 0.96156 1.00811 1.00924 1.18673 0.93713 0.93074 0.92000 1.22332 1.01314 0.96857 1.00205 1.21000 1.33009 1.11245 0.90325 0.94879 1.25820 0.95374 1.01333 0.95334 1.70102 1.50534 1.38223 0.99446 0.86395 0.79372 0.80207 0.76968 1.21009 1.24668 1.12868 1.21216 0.98187 0.95325 0.82088 1.46021 1.52446 1.31741 1.05333 1.17090 0.80420 0.83660 0.82059 1.90900 1.38919 1.26529 1.86286 1.20885 1.00353 0.90227 0.96680 1.21806 1.01956 1.01554 0.88246 1.21311 0.95140 0.91240 1.02316 1.20936 1.09661 0.96235 0.86860 1.42758 0.98921 1.00223 1.00833 1.94612 1.50549 1.44898 1.50364 1.94579 1.64767 1.76616 0.99270 1.41672 1.39311 1.23115 1.06847 0.71875 0.91830 0.93635 0.93663 0.93075 0.94715 0.91055 0.92660 0.92561 0.92763 0.75648 0.79129 0.78001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.98 7.53 71.98 0.54 -4.44 16 2 C 0.03 1.03 0.50 -52.93 -0.03 1.00 16 3 C -0.15 -5.12 7.52 71.98 0.54 -4.58 16 4 C -0.52 -26.94 8.62 25.60 0.22 -26.72 16 5 H 0.03 1.96 7.99 -2.91 -0.02 1.93 16 6 C 0.02 1.05 5.32 84.66 0.45 1.50 16 7 N -0.94 -56.86 13.96 21.45 0.30 -56.56 16 8 Si 0.94 41.06 22.79 68.60 1.56 42.62 16 9 H -0.28 -12.15 7.10 99.48 0.71 -11.45 16 10 H -0.32 -14.48 7.11 99.48 0.71 -13.77 16 11 H -0.20 -7.44 4.65 99.48 0.46 -6.98 16 12 C 0.15 5.38 4.49 86.38 0.39 5.77 16 13 N -0.70 -17.84 5.00 -467.08 -2.34 -20.18 16 14 C 0.58 14.83 7.79 86.45 0.67 15.50 16 15 O -0.55 -18.17 16.88 -4.35 -0.07 -18.24 16 16 C 0.04 0.71 7.06 40.35 0.28 0.99 16 17 C -0.11 -1.62 10.65 22.57 0.24 -1.38 16 18 C -0.07 -0.92 10.46 22.01 0.23 -0.69 16 19 C 0.06 1.01 8.05 127.91 1.03 2.04 16 20 N 0.06 1.20 4.45 -49.52 -0.22 0.98 16 21 O -0.20 -4.67 19.24 18.88 0.36 -4.31 16 22 O -0.13 -2.82 19.00 18.88 0.36 -2.46 16 23 N -0.51 -7.97 5.97 -174.46 -1.04 -9.01 16 24 H 0.44 5.45 8.19 -92.71 -0.76 4.69 16 25 H 0.06 1.62 7.13 -2.39 -0.02 1.61 16 26 H 0.04 1.71 4.30 -2.39 -0.01 1.70 16 27 H 0.04 1.59 8.12 -2.39 -0.02 1.57 16 28 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.03 1.27 2.25 -2.39 -0.01 1.26 16 30 H 0.07 1.77 6.86 -2.39 -0.02 1.76 16 31 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 32 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 33 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.41 7.92 5.39 -92.71 -0.50 7.42 16 35 H 0.19 2.25 8.06 -2.91 -0.02 2.23 16 36 H 0.20 1.39 8.06 -2.91 -0.02 1.37 16 Total: -1.00 -67.75 303.23 3.14 -64.61 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -0.35 Total: 13.55 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: 4.57 Total: -11.00 kcal Atomic # 7 Polarization: -81.46 SS G_CDS: -3.30 Total: -84.76 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: 0.65 Total: -25.01 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 1.56 Total: 42.62 kcal Total: -67.75 3.14 -64.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457994186.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.906 kcal (2) G-P(sol) polarization free energy of solvation -67.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds