Wall clock time and date at job start Tue Mar 31 2020 06:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47118 * 196.59281 * 3 2 1 5 5 C 1.46503 * 120.00210 * 265.47423 * 4 3 2 6 6 C 1.47201 * 109.47243 * 280.06027 * 5 4 3 7 7 C 5.28076 * 152.91951 * 138.10011 * 2 1 3 8 8 C 6.58180 * 156.55804 * 124.87260 * 2 1 3 9 9 C 1.34779 * 120.00153 * 85.47592 * 4 3 2 10 10 O 1.21580 * 119.99977 * 6.47341 * 9 4 3 11 11 C 1.47646 * 120.00072 * 186.47028 * 9 4 3 12 12 C 1.40004 * 119.89529 * 148.90543 * 11 9 4 13 13 C 1.36318 * 120.10896 * 180.27714 * 12 11 9 14 14 C 1.40893 * 119.88757 * 359.50092 * 13 12 11 15 15 C 1.41116 * 120.10291 * 180.23258 * 14 13 12 16 16 H 1.07993 * 119.99758 * 205.86228 * 15 14 13 17 17 C 1.40223 * 119.99548 * 25.85370 * 15 14 13 18 18 N 1.30644 * 120.00560 * 16.50416 * 17 15 14 19 19 Si 1.86806 * 119.99614 * 196.49730 * 17 15 14 20 20 H 1.48503 * 109.46664 * 94.99078 * 19 17 15 21 21 H 1.48495 * 109.47248 * 214.98992 * 19 17 15 22 22 H 1.48500 * 109.47165 * 334.99586 * 19 17 15 23 23 C 1.40888 * 119.79220 * 0.49449 * 14 13 12 24 24 C 1.36311 * 119.89211 * 359.76050 * 23 14 13 25 25 H 4.40631 * 5.51482 * 179.97438 * 4 1 2 26 26 H 1.09001 * 109.47404 * 76.59174 * 3 2 1 27 27 H 1.08998 * 109.47218 * 316.59325 * 3 2 1 28 28 H 1.09006 * 109.46612 * 40.05551 * 5 4 3 29 29 H 1.08995 * 109.47308 * 160.05724 * 5 4 3 30 30 H 1.08994 * 109.46894 * 110.99710 * 8 7 6 31 31 H 1.09001 * 109.46785 * 230.99960 * 8 7 6 32 32 H 1.08998 * 109.46982 * 350.99101 * 8 7 6 33 33 H 1.08003 * 119.95041 * 359.97438 * 12 11 9 34 34 H 1.07998 * 120.05837 * 179.74548 * 13 12 11 35 35 H 0.97000 * 120.00094 * 179.97438 * 18 17 15 36 36 H 1.08002 * 120.05248 * 179.73486 * 23 14 13 37 37 H 1.08004 * 119.94644 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3245 0.3944 5 6 3.4718 2.3158 -0.6300 6 6 4.8087 2.0242 -1.1727 7 6 5.8758 1.7893 -1.6055 8 6 7.2126 1.4971 -2.1482 9 6 3.2714 1.6307 1.6997 10 8 3.1046 0.7738 2.5460 11 6 3.6249 3.0066 2.1020 12 6 3.1624 3.5179 3.3206 13 6 3.4814 4.7896 3.6937 14 6 4.2867 5.5861 2.8557 15 6 4.6238 6.9015 3.2397 16 1 4.8582 7.6402 2.4877 17 6 4.6541 7.2492 4.5978 18 7 4.6926 6.3153 5.5106 19 14 4.6397 9.0479 5.1019 20 1 3.2453 9.4701 5.3893 21 1 5.4721 9.2278 6.3184 22 1 5.1900 9.8756 3.9986 23 6 4.7497 5.0671 1.6304 24 6 4.4211 3.7961 1.2635 25 1 -1.0502 -0.0003 -0.0003 26 1 3.0095 -0.2375 -0.9996 27 1 3.0097 -0.7458 0.7062 28 1 2.7364 2.2733 -1.4334 29 1 3.4689 3.3117 -0.1870 30 1 7.2756 1.8602 -3.1739 31 1 7.9683 1.9939 -1.5397 32 1 7.3836 0.4207 -2.1325 33 1 2.5478 2.9055 3.9638 34 1 3.1208 5.1846 4.6319 35 1 4.7140 6.5560 6.4501 36 1 5.3637 5.6754 0.9828 37 1 4.7753 3.3974 0.3243 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490876456.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:52 Heat of formation + Delta-G solvation = 111.236051 kcal Electronic energy + Delta-G solvation = -20532.045651 eV Core-core repulsion = 17436.103734 eV Total energy + Delta-G solvation = -3095.941916 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.74372 -37.23865 -35.96569 -34.22155 -33.73838 -32.69624 -30.28253 -29.96367 -29.10683 -27.37314 -25.92752 -25.04343 -21.62520 -21.18914 -19.41147 -18.20534 -17.66861 -16.90660 -16.24833 -15.95965 -15.43712 -14.83441 -14.58929 -14.00551 -13.63049 -13.57394 -13.50271 -13.39660 -13.11488 -13.00341 -12.60120 -12.51016 -11.93696 -11.66555 -11.39911 -11.21572 -10.87409 -10.68853 -10.56189 -10.08350 -10.01082 -9.79974 -9.64804 -9.47357 -9.34847 -8.95340 -8.65906 -7.68635 -7.53535 -6.99480 -4.59822 2.22806 2.42490 2.75065 2.89730 2.94795 2.96300 2.96647 2.99821 3.02812 3.68259 3.76406 3.88281 4.32150 4.46860 4.60659 5.22537 5.34571 5.48267 5.52780 5.56468 5.58811 5.66302 5.85008 5.90150 5.94019 6.04305 6.12155 6.25601 6.74718 6.81912 6.86031 7.03538 7.09532 7.43728 7.57883 7.68318 7.72113 7.74786 7.85446 7.98897 8.08481 8.42775 8.63902 8.74990 8.89020 9.92621 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.017703 B = 0.004504 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.282933 B = 6215.341929 C = 7273.638871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.193 4.193 3 C 0.224 3.776 4 N -0.613 5.613 5 C 0.193 3.807 6 C -0.198 4.198 7 C -0.177 4.177 8 C -0.040 4.040 9 C 0.579 3.421 10 O -0.557 6.557 11 C -0.279 4.279 12 C -0.038 4.038 13 C -0.177 4.177 14 C 0.127 3.873 15 C -0.445 4.445 16 H 0.084 0.916 17 C 0.074 3.926 18 N -0.772 5.772 19 Si 0.914 3.086 20 H -0.265 1.265 21 H -0.275 1.275 22 H -0.259 1.259 23 C -0.231 4.231 24 C -0.079 4.079 25 H 0.216 0.784 26 H 0.095 0.905 27 H 0.103 0.897 28 H 0.087 0.913 29 H 0.147 0.853 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.121 0.879 35 H 0.287 0.713 36 H 0.098 0.902 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.786 -4.707 -11.090 12.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.195 4.195 3 C 0.101 3.899 4 N -0.345 5.345 5 C 0.071 3.929 6 C -0.200 4.200 7 C -0.178 4.178 8 C -0.095 4.095 9 C 0.375 3.625 10 O -0.436 6.436 11 C -0.284 4.284 12 C -0.058 4.058 13 C -0.197 4.197 14 C 0.124 3.876 15 C -0.473 4.473 16 H 0.103 0.897 17 C -0.148 4.148 18 N -0.395 5.395 19 Si 0.737 3.263 20 H -0.190 1.190 21 H -0.200 1.200 22 H -0.183 1.183 23 C -0.251 4.251 24 C -0.097 4.097 25 H 0.233 0.767 26 H 0.113 0.887 27 H 0.121 0.879 28 H 0.105 0.895 29 H 0.164 0.836 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.115 0.885 34 H 0.139 0.861 35 H 0.098 0.902 36 H 0.116 0.884 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.833 -5.204 -10.345 11.610 hybrid contribution -0.111 0.701 0.275 0.761 sum -0.944 -4.503 -10.071 11.072 Atomic orbital electron populations 1.24871 0.95854 0.99476 1.01660 1.23719 0.95061 1.00904 0.99800 1.18159 0.83408 0.86663 1.01643 1.47815 1.66877 1.13647 1.06194 1.19372 0.86655 0.96076 0.90799 1.22871 0.95705 1.01577 0.99828 1.22465 0.94982 1.00010 1.00386 1.18859 0.88126 1.02149 1.00413 1.18811 0.74432 0.88948 0.80335 1.90657 1.52687 1.50178 1.50096 1.18820 1.15580 0.93680 1.00300 1.20406 0.97059 0.95207 0.93091 1.21005 1.02366 0.94272 1.02027 1.17800 0.86879 0.92540 0.90362 1.19836 1.38977 0.96235 0.92223 0.89743 1.26094 0.92005 1.00155 0.96512 1.69745 1.31701 1.35336 1.02706 0.86198 0.79401 0.81666 0.78998 1.19025 1.19992 1.18276 1.20705 1.07744 0.96025 1.00606 1.21150 0.96634 0.94575 0.97378 0.76737 0.88713 0.87914 0.89503 0.83587 0.90301 0.90040 0.90334 0.88539 0.86111 0.90205 0.88431 0.86376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.72 19.25 29.55 0.57 -2.15 16 2 C -0.19 -2.97 13.63 -37.12 -0.51 -3.48 16 3 C 0.22 3.39 5.87 -6.83 -0.04 3.35 16 4 N -0.61 -10.87 2.43 -181.57 -0.44 -11.31 16 5 C 0.19 2.96 5.39 -6.83 -0.04 2.93 16 6 C -0.20 -3.03 11.70 -37.11 -0.43 -3.46 16 7 C -0.18 -2.47 14.14 -37.11 -0.52 -3.00 16 8 C -0.04 -0.38 10.32 34.37 0.35 -0.03 16 9 C 0.58 12.77 7.39 -12.42 -0.09 12.68 16 10 O -0.56 -13.78 16.34 5.29 0.09 -13.69 16 11 C -0.28 -6.50 5.58 -104.73 -0.58 -7.09 16 12 C -0.04 -0.94 9.52 -39.61 -0.38 -1.32 16 13 C -0.18 -4.54 8.62 -39.27 -0.34 -4.88 16 14 C 0.13 3.24 5.57 -106.80 -0.59 2.65 16 15 C -0.44 -11.06 9.05 -37.75 -0.34 -11.40 16 16 H 0.08 1.99 7.90 -52.49 -0.41 1.57 16 17 C 0.07 1.74 5.16 -17.31 -0.09 1.65 16 18 N -0.77 -19.04 10.95 55.56 0.61 -18.43 16 19 Si 0.91 17.45 29.59 -169.99 -5.03 12.42 16 20 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 21 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 22 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 23 C -0.23 -5.38 9.73 -39.27 -0.38 -5.76 16 24 C -0.08 -1.72 7.38 -39.61 -0.29 -2.02 16 25 H 0.22 2.07 7.80 -54.08 -0.42 1.64 16 26 H 0.09 1.15 8.03 -51.93 -0.42 0.73 16 27 H 0.10 1.63 7.48 -51.93 -0.39 1.24 16 28 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.15 2.46 3.96 -52.26 -0.21 2.25 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.10 2.33 7.93 -52.48 -0.42 1.91 16 34 H 0.12 3.16 6.19 -52.49 -0.33 2.83 16 35 H 0.29 6.38 8.29 -40.82 -0.34 6.04 16 36 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 37 H 0.12 2.27 3.30 -52.48 -0.17 2.10 16 LS Contribution 330.45 15.07 4.98 4.98 Total: -1.00 -30.30 330.45 -7.52 -37.82 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -4.01 Total: 9.56 kcal Atomic # 6 Polarization: -17.62 SS G_CDS: -3.71 Total: -21.33 kcal Atomic # 7 Polarization: -29.92 SS G_CDS: 0.17 Total: -29.75 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: 0.09 Total: -13.69 kcal Atomic # 14 Polarization: 17.45 SS G_CDS: -5.03 Total: 12.42 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.30 -7.52 -37.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490876456.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.058 kcal (2) G-P(sol) polarization free energy of solvation -30.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds