Wall clock time and date at job start Tue Mar 31 2020 06:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47118 * 196.59281 * 3 2 1 5 5 C 1.46503 * 120.00210 * 265.47423 * 4 3 2 6 6 C 1.47201 * 109.47243 * 280.06027 * 5 4 3 7 7 C 5.28076 * 152.91951 * 138.10011 * 2 1 3 8 8 C 6.58180 * 156.55804 * 124.87260 * 2 1 3 9 9 C 1.34779 * 120.00153 * 85.47592 * 4 3 2 10 10 O 1.21580 * 119.99977 * 6.47341 * 9 4 3 11 11 C 1.47646 * 120.00072 * 186.47028 * 9 4 3 12 12 C 1.40004 * 119.89529 * 148.90543 * 11 9 4 13 13 C 1.36318 * 120.10896 * 180.27714 * 12 11 9 14 14 C 1.40893 * 119.88757 * 359.50092 * 13 12 11 15 15 C 1.41116 * 120.10291 * 180.23258 * 14 13 12 16 16 H 1.07993 * 119.99758 * 205.86228 * 15 14 13 17 17 C 1.40223 * 119.99548 * 25.85370 * 15 14 13 18 18 N 1.30644 * 120.00560 * 16.50416 * 17 15 14 19 19 Si 1.86806 * 119.99614 * 196.49730 * 17 15 14 20 20 H 1.48503 * 109.46664 * 94.99078 * 19 17 15 21 21 H 1.48495 * 109.47248 * 214.98992 * 19 17 15 22 22 H 1.48500 * 109.47165 * 334.99586 * 19 17 15 23 23 C 1.40888 * 119.79220 * 0.49449 * 14 13 12 24 24 C 1.36311 * 119.89211 * 359.76050 * 23 14 13 25 25 H 4.40631 * 5.51482 * 179.97438 * 4 1 2 26 26 H 1.09001 * 109.47404 * 76.59174 * 3 2 1 27 27 H 1.08998 * 109.47218 * 316.59325 * 3 2 1 28 28 H 1.09006 * 109.46612 * 40.05551 * 5 4 3 29 29 H 1.08995 * 109.47308 * 160.05724 * 5 4 3 30 30 H 1.08994 * 109.46894 * 110.99710 * 8 7 6 31 31 H 1.09001 * 109.46785 * 230.99960 * 8 7 6 32 32 H 1.08998 * 109.46982 * 350.99101 * 8 7 6 33 33 H 1.08003 * 119.95041 * 359.97438 * 12 11 9 34 34 H 1.07998 * 120.05837 * 179.74548 * 13 12 11 35 35 H 0.97000 * 120.00094 * 179.97438 * 18 17 15 36 36 H 1.08002 * 120.05248 * 179.73486 * 23 14 13 37 37 H 1.08004 * 119.94644 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3245 0.3944 5 6 3.4718 2.3158 -0.6300 6 6 4.8087 2.0242 -1.1727 7 6 5.8758 1.7893 -1.6055 8 6 7.2126 1.4971 -2.1482 9 6 3.2714 1.6307 1.6997 10 8 3.1046 0.7738 2.5460 11 6 3.6249 3.0066 2.1020 12 6 3.1624 3.5179 3.3206 13 6 3.4814 4.7896 3.6937 14 6 4.2867 5.5861 2.8557 15 6 4.6238 6.9015 3.2397 16 1 4.8582 7.6402 2.4877 17 6 4.6541 7.2492 4.5978 18 7 4.6926 6.3153 5.5106 19 14 4.6397 9.0479 5.1019 20 1 3.2453 9.4701 5.3893 21 1 5.4721 9.2278 6.3184 22 1 5.1900 9.8756 3.9986 23 6 4.7497 5.0671 1.6304 24 6 4.4211 3.7961 1.2635 25 1 -1.0502 -0.0003 -0.0003 26 1 3.0095 -0.2375 -0.9996 27 1 3.0097 -0.7458 0.7062 28 1 2.7364 2.2733 -1.4334 29 1 3.4689 3.3117 -0.1870 30 1 7.2756 1.8602 -3.1739 31 1 7.9683 1.9939 -1.5397 32 1 7.3836 0.4207 -2.1325 33 1 2.5478 2.9055 3.9638 34 1 3.1208 5.1846 4.6319 35 1 4.7140 6.5560 6.4501 36 1 5.3637 5.6754 0.9828 37 1 4.7753 3.3974 0.3243 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490876456.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:52 Heat of formation + Delta-G solvation = 96.298677 kcal Electronic energy + Delta-G solvation = -20532.693384 eV Core-core repulsion = 17436.103734 eV Total energy + Delta-G solvation = -3096.589650 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.36534 -39.03889 -37.48157 -35.81856 -35.03947 -33.88173 -32.02581 -31.65917 -30.35863 -28.80601 -27.35177 -26.50197 -23.38077 -23.00415 -21.02481 -19.49163 -19.36341 -18.41001 -17.53133 -17.42392 -17.20578 -16.21925 -16.08343 -15.53047 -15.19903 -14.89777 -14.62655 -14.47544 -14.40524 -14.28220 -14.11325 -14.02684 -13.69029 -13.29752 -13.21896 -12.81603 -12.53120 -12.33979 -11.79670 -11.67076 -11.28184 -11.18015 -11.16589 -10.90458 -10.83406 -10.56275 -10.13380 -9.56660 -9.39579 -8.78084 -6.49694 0.43202 1.06989 1.19993 1.38003 1.42105 1.54334 1.69097 1.76766 1.85102 2.02233 2.16218 2.56633 2.70661 3.28180 3.51106 3.62368 3.85936 4.19332 4.29965 4.35226 4.40975 4.51786 4.62733 4.75623 4.84655 4.85749 4.93466 4.99922 5.02869 5.09131 5.16394 5.22968 5.43838 5.56717 5.73664 5.90823 5.98337 6.17290 6.33177 6.53983 6.62613 6.65255 6.76008 6.86740 7.20457 8.17211 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.017703 B = 0.004504 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.282933 B = 6215.341929 C = 7273.638871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.242 4.242 3 C 0.223 3.777 4 N -0.604 5.604 5 C 0.195 3.805 6 C -0.243 4.243 7 C -0.160 4.160 8 C -0.046 4.046 9 C 0.576 3.424 10 O -0.594 6.594 11 C -0.291 4.291 12 C -0.051 4.051 13 C -0.196 4.196 14 C 0.102 3.898 15 C -0.471 4.471 16 H 0.093 0.907 17 C 0.033 3.967 18 N -0.807 5.807 19 Si 0.990 3.010 20 H -0.261 1.261 21 H -0.268 1.268 22 H -0.250 1.250 23 C -0.242 4.242 24 C -0.065 4.065 25 H 0.251 0.749 26 H 0.127 0.873 27 H 0.090 0.910 28 H 0.117 0.883 29 H 0.130 0.870 30 H 0.104 0.896 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.106 0.894 35 H 0.295 0.705 36 H 0.115 0.885 37 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.369 -4.280 -13.213 13.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.243 4.243 3 C 0.102 3.898 4 N -0.334 5.334 5 C 0.074 3.926 6 C -0.244 4.244 7 C -0.162 4.162 8 C -0.102 4.102 9 C 0.371 3.629 10 O -0.477 6.477 11 C -0.295 4.295 12 C -0.070 4.070 13 C -0.216 4.216 14 C 0.099 3.901 15 C -0.499 4.499 16 H 0.111 0.889 17 C -0.185 4.185 18 N -0.431 5.431 19 Si 0.810 3.190 20 H -0.186 1.186 21 H -0.192 1.192 22 H -0.174 1.174 23 C -0.261 4.261 24 C -0.083 4.083 25 H 0.267 0.733 26 H 0.145 0.855 27 H 0.108 0.892 28 H 0.135 0.865 29 H 0.147 0.853 30 H 0.122 0.878 31 H 0.106 0.894 32 H 0.115 0.885 33 H 0.108 0.892 34 H 0.124 0.876 35 H 0.106 0.894 36 H 0.133 0.867 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -0.415 -4.792 -12.525 13.417 hybrid contribution -0.250 0.453 0.827 0.976 sum -0.665 -4.339 -11.697 12.494 Atomic orbital electron populations 1.25787 0.96790 0.97188 0.99713 1.23943 0.95692 1.02975 1.01687 1.18306 0.83897 0.84719 1.02870 1.47760 1.65469 1.15093 1.05101 1.19329 0.88173 0.94364 0.90713 1.22849 0.96302 1.03672 1.01618 1.23451 0.95588 0.98116 0.99038 1.19172 0.85777 1.03539 1.01671 1.18653 0.74413 0.88054 0.81736 1.90625 1.54527 1.50882 1.51636 1.19068 1.15625 0.94804 1.00024 1.20473 0.97487 0.95057 0.93986 1.20926 1.03675 0.94935 1.02027 1.18143 0.87347 0.93254 0.91369 1.20160 1.39939 0.96368 0.93407 0.88890 1.27025 0.90771 1.04744 0.95942 1.69803 1.32047 1.37761 1.03444 0.85058 0.79514 0.75614 0.78827 1.18605 1.19246 1.17365 1.20947 1.08042 0.96852 1.00287 1.21424 0.95163 0.93815 0.97871 0.73307 0.85486 0.89230 0.86489 0.85346 0.87811 0.89384 0.88538 0.89198 0.87608 0.89400 0.86687 0.83498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.43 19.25 74.32 1.43 -3.00 16 2 C -0.24 -7.14 13.63 31.12 0.42 -6.72 16 3 C 0.22 6.58 5.87 84.57 0.50 7.08 16 4 N -0.60 -21.11 2.43 -846.61 -2.05 -23.17 16 5 C 0.19 5.74 5.39 84.57 0.46 6.19 16 6 C -0.24 -6.95 11.70 31.11 0.36 -6.59 16 7 C -0.16 -4.07 14.14 31.11 0.44 -3.63 16 8 C -0.05 -0.73 10.32 70.18 0.72 -0.01 16 9 C 0.58 25.89 7.39 86.73 0.64 26.53 16 10 O -0.59 -30.32 16.34 -3.97 -0.06 -30.38 16 11 C -0.29 -13.88 5.58 -19.93 -0.11 -13.99 16 12 C -0.05 -2.62 9.52 22.25 0.21 -2.41 16 13 C -0.20 -10.54 8.62 22.47 0.19 -10.35 16 14 C 0.10 5.34 5.57 -21.27 -0.12 5.22 16 15 C -0.47 -23.77 9.05 23.46 0.21 -23.56 16 16 H 0.09 4.37 7.90 -2.91 -0.02 4.35 16 17 C 0.03 1.59 5.16 85.35 0.44 2.03 16 18 N -0.81 -40.81 10.95 21.87 0.24 -40.57 16 19 Si 0.99 35.44 29.59 68.60 2.03 37.47 16 20 H -0.26 -9.14 7.11 99.48 0.71 -8.43 16 21 H -0.27 -9.21 7.11 99.48 0.71 -8.50 16 22 H -0.25 -8.55 7.11 99.48 0.71 -7.84 16 23 C -0.24 -11.33 9.73 22.47 0.22 -11.11 16 24 C -0.06 -2.83 7.38 22.25 0.16 -2.67 16 25 H 0.25 3.98 7.80 -4.41 -0.03 3.94 16 26 H 0.13 2.83 8.03 -2.39 -0.02 2.81 16 27 H 0.09 2.86 7.48 -2.39 -0.02 2.85 16 28 H 0.12 2.71 8.14 -2.38 -0.02 2.69 16 29 H 0.13 4.23 3.96 -2.70 -0.01 4.22 16 30 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.09 4.63 7.93 -2.91 -0.02 4.61 16 34 H 0.11 5.88 6.19 -2.91 -0.02 5.86 16 35 H 0.29 13.38 8.29 -92.71 -0.77 12.61 16 36 H 0.12 4.87 8.06 -2.91 -0.02 4.84 16 37 H 0.15 5.52 3.30 -2.91 -0.01 5.51 16 Total: -1.00 -67.85 330.45 7.43 -60.41 By element: Atomic # 1 Polarization: 32.11 SS G_CDS: 1.10 Total: 33.20 kcal Atomic # 6 Polarization: -43.16 SS G_CDS: 6.19 Total: -36.97 kcal Atomic # 7 Polarization: -61.92 SS G_CDS: -1.81 Total: -63.74 kcal Atomic # 8 Polarization: -30.32 SS G_CDS: -0.06 Total: -30.38 kcal Atomic # 14 Polarization: 35.44 SS G_CDS: 2.03 Total: 37.47 kcal Total: -67.85 7.43 -60.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490876456.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.710 kcal (2) G-P(sol) polarization free energy of solvation -67.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds