Wall clock time and date at job start Tue Mar 31 2020 05:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86797 * 120.00226 * 2 1 4 4 H 1.48500 * 109.47048 * 274.66471 * 3 2 1 5 5 H 1.48498 * 109.47252 * 34.66428 * 3 2 1 6 6 H 1.48496 * 109.47461 * 154.66416 * 3 2 1 7 7 C 1.39951 * 119.99753 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99385 * 162.23207 * 7 2 1 9 9 C 1.41395 * 120.00207 * 342.22830 * 7 2 1 10 10 C 1.40707 * 120.24267 * 155.28681 * 9 7 2 11 11 C 1.37619 * 119.74375 * 180.02562 * 10 9 7 12 12 C 1.38639 * 120.24888 * 0.02865 * 11 10 9 13 13 C 1.50698 * 119.74967 * 179.97438 * 12 11 10 14 14 N 1.46501 * 109.47122 * 89.99659 * 13 12 11 15 15 C 1.34771 * 120.00098 * 179.97438 * 14 13 12 16 16 O 1.21514 * 120.00141 * 0.02562 * 15 14 13 17 17 O 1.34642 * 120.00221 * 180.02562 * 15 14 13 18 18 C 1.45196 * 117.00014 * 180.02562 * 17 15 14 19 19 C 1.53002 * 109.46981 * 180.02562 * 18 17 15 20 20 C 1.53004 * 109.46999 * 180.02562 * 19 18 17 21 21 F 1.39898 * 109.47214 * 180.02562 * 20 19 18 22 22 C 1.38635 * 120.49782 * 0.24803 * 12 11 10 23 23 C 1.37614 * 120.25107 * 359.44663 * 22 12 11 24 24 H 0.97004 * 119.99893 * 0.02562 * 1 2 3 25 25 H 1.07997 * 120.13074 * 0.02562 * 10 9 7 26 26 H 1.08000 * 119.87621 * 180.02562 * 11 10 9 27 27 H 1.08998 * 109.47087 * 209.99875 * 13 12 11 28 28 H 1.08994 * 109.47038 * 330.00134 * 13 12 11 29 29 H 0.97006 * 120.00433 * 0.02562 * 14 13 12 30 30 H 1.08997 * 109.47392 * 300.00199 * 18 17 15 31 31 H 1.09003 * 109.47334 * 60.00386 * 18 17 15 32 32 H 1.09006 * 109.46875 * 299.99845 * 19 18 17 33 33 H 1.09000 * 109.47340 * 60.00307 * 19 18 17 34 34 H 1.09006 * 109.46729 * 299.99381 * 20 19 18 35 35 H 1.08993 * 109.47363 * 59.99309 * 20 19 18 36 36 H 1.08003 * 119.87291 * 179.69838 * 22 12 11 37 37 H 1.08002 * 120.12976 * 180.27263 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3911 2.1033 -1.3954 5 1 1.4925 2.6222 0.7963 6 1 3.5856 1.4137 0.5991 7 6 2.0079 -1.2120 -0.0005 8 1 3.0493 -1.2341 -0.2860 9 6 1.3515 -2.4075 0.3727 10 6 1.8217 -3.6492 -0.0930 11 6 1.1746 -4.8064 0.2762 12 6 0.0633 -4.7517 1.1032 13 6 -0.6370 -6.0257 1.5001 14 7 -0.0449 -6.5438 2.7359 15 6 -0.5149 -7.6825 3.2826 16 8 -1.4295 -8.2797 2.7501 17 8 0.0288 -8.1583 4.4187 18 6 -0.5273 -9.3898 4.9502 19 6 0.2123 -9.7708 6.2343 20 6 -0.3733 -11.0688 6.7940 21 9 0.3026 -11.4169 7.9684 22 6 -0.4120 -3.5333 1.5634 23 6 0.2229 -2.3640 1.2121 24 1 -0.4850 0.8401 -0.0004 25 1 2.6869 -3.6941 -0.7378 26 1 1.5339 -5.7607 -0.0797 27 1 -1.6958 -5.8233 1.6614 28 1 -0.5250 -6.7642 0.7063 29 1 0.6849 -6.0669 3.1613 30 1 -1.5852 -9.2458 5.1697 31 1 -0.4139 -10.1867 4.2152 32 1 1.2703 -9.9147 6.0151 33 1 0.0986 -8.9739 6.9692 34 1 -1.4314 -10.9252 7.0132 35 1 -0.2593 -11.8655 6.0590 36 1 -1.2815 -3.5021 2.2032 37 1 -0.1465 -1.4163 1.5752 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496047166.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:03 Heat of formation + Delta-G solvation = -134.613857 kcal Electronic energy + Delta-G solvation = -20373.197151 eV Core-core repulsion = 16835.825158 eV Total energy + Delta-G solvation = -3537.371993 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -47.98857 -40.26775 -37.94893 -36.75847 -34.79951 -33.72005 -33.37373 -30.40875 -29.40981 -27.27715 -26.07945 -23.81220 -22.18083 -21.20629 -21.10029 -20.19337 -18.56150 -17.43703 -17.11454 -16.90166 -16.19062 -15.85339 -15.49784 -15.25978 -14.68957 -14.47777 -14.06417 -13.82221 -13.76403 -13.32728 -12.63424 -12.58543 -12.08544 -11.97433 -11.91857 -11.64692 -11.58591 -11.25281 -11.17868 -11.12905 -10.68720 -10.62818 -10.59860 -10.40708 -9.76295 -9.53870 -9.27273 -8.83557 -7.62278 -7.51308 -6.91479 -4.51070 2.11510 2.69861 2.94480 2.99751 3.01671 3.02905 3.10626 3.82181 4.08448 4.31741 4.40935 4.48036 4.64686 4.82792 4.84979 5.10678 5.21719 5.51701 5.54664 5.65400 5.73810 5.82429 6.13290 6.19427 6.29194 6.43029 6.68105 6.82699 6.93343 7.13255 7.21508 7.46603 7.61934 7.80207 7.91147 7.95987 8.14675 8.48995 8.54667 8.74018 8.81692 10.02498 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.035012 B = 0.002498 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.529612 B =11205.560022 C =11512.405622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.075 3.925 3 Si 0.909 3.091 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.456 4.456 8 H 0.080 0.920 9 C 0.118 3.882 10 C -0.230 4.230 11 C -0.066 4.066 12 C -0.250 4.250 13 C 0.201 3.799 14 N -0.695 5.695 15 C 0.640 3.360 16 O -0.584 6.584 17 O -0.374 6.374 18 C 0.090 3.910 19 C -0.156 4.156 20 C 0.067 3.933 21 F -0.215 7.215 22 C -0.078 4.078 23 C -0.171 4.171 24 H 0.283 0.717 25 H 0.094 0.906 26 H 0.089 0.911 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.407 0.593 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.534 -12.172 8.974 15.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.144 4.144 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.485 4.485 8 H 0.098 0.902 9 C 0.115 3.885 10 C -0.250 4.250 11 C -0.085 4.085 12 C -0.252 4.252 13 C 0.081 3.919 14 N -0.353 5.353 15 C 0.393 3.607 16 O -0.474 6.474 17 O -0.288 6.288 18 C 0.015 3.985 19 C -0.194 4.194 20 C 0.012 3.988 21 F -0.196 7.196 22 C -0.097 4.097 23 C -0.190 4.190 24 H 0.094 0.906 25 H 0.112 0.888 26 H 0.107 0.893 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.242 0.758 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.107 0.893 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.200 -12.363 8.753 15.196 hybrid contribution 0.570 0.974 0.093 1.132 sum -0.630 -11.390 8.845 14.435 Atomic orbital electron populations 1.69819 1.07688 1.29567 1.33862 1.25976 0.94767 1.01576 0.92083 0.86277 0.80781 0.80420 0.79195 1.19443 1.19910 1.18304 1.19680 0.98226 0.91253 1.39329 0.90185 1.17688 0.90805 0.92086 0.87885 1.20969 1.04027 0.92825 1.07161 1.20420 0.94691 0.96581 0.96785 1.18908 1.02986 0.92304 1.11030 1.19993 0.95914 0.93320 0.82664 1.45524 1.39326 1.22766 1.27726 1.18321 0.80979 0.82137 0.79295 1.90963 1.31683 1.60526 1.64235 1.86221 1.61036 1.41725 1.39828 1.22633 0.97623 0.83881 0.94361 1.22137 1.02127 0.98138 0.97028 1.21775 0.96312 0.96881 0.83805 1.92786 1.82727 1.93375 1.50686 1.20564 0.97982 0.92557 0.98559 1.21312 0.99468 0.96808 1.01402 0.90605 0.88793 0.89263 0.91984 0.92059 0.75802 0.90931 0.90934 0.89466 0.89448 0.90241 0.90236 0.89279 0.86354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.39 10.97 55.55 0.61 -18.78 16 2 C 0.08 1.80 5.14 -17.34 -0.09 1.71 16 3 Si 0.91 17.77 29.59 -169.99 -5.03 12.74 16 4 H -0.27 -5.21 7.11 56.52 0.40 -4.80 16 5 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 6 H -0.26 -5.04 7.11 56.52 0.40 -4.63 16 7 C -0.46 -11.51 9.05 -37.74 -0.34 -11.85 16 8 H 0.08 1.94 7.91 -52.49 -0.41 1.52 16 9 C 0.12 2.98 5.57 -106.83 -0.60 2.39 16 10 C -0.23 -5.32 9.80 -38.88 -0.38 -5.70 16 11 C -0.07 -1.37 9.67 -39.66 -0.38 -1.76 16 12 C -0.25 -5.04 5.27 -104.33 -0.55 -5.59 16 13 C 0.20 3.54 5.79 -5.19 -0.03 3.51 16 14 N -0.70 -11.17 5.55 -66.47 -0.37 -11.54 16 15 C 0.64 10.43 8.75 54.05 0.47 10.90 16 16 O -0.58 -10.94 16.13 -19.28 -0.31 -11.25 16 17 O -0.37 -5.11 10.27 -40.33 -0.41 -5.52 16 18 C 0.09 0.91 5.47 37.16 0.20 1.12 16 19 C -0.16 -1.21 6.05 -26.73 -0.16 -1.38 16 20 C 0.07 0.43 7.55 37.16 0.28 0.71 16 21 F -0.21 -1.99 17.36 2.25 0.04 -1.95 16 22 C -0.08 -1.69 9.67 -39.66 -0.38 -2.07 16 23 C -0.17 -4.18 8.70 -38.87 -0.34 -4.52 16 24 H 0.28 6.33 8.30 -40.82 -0.34 6.00 16 25 H 0.09 2.05 8.06 -52.49 -0.42 1.63 16 26 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 27 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 28 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 29 H 0.41 6.12 8.57 -40.82 -0.35 5.77 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 37 H 0.12 3.01 6.18 -52.49 -0.32 2.68 16 LS Contribution 327.80 15.07 4.94 4.94 Total: -1.00 -27.96 327.80 -7.70 -35.66 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -4.87 Total: 8.25 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: -2.30 Total: -12.53 kcal Atomic # 7 Polarization: -30.57 SS G_CDS: 0.24 Total: -30.32 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: -0.73 Total: -16.77 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.04 Total: -1.95 kcal Atomic # 14 Polarization: 17.77 SS G_CDS: -5.03 Total: 12.74 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -27.96 -7.70 -35.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496047166.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.957 kcal (2) G-P(sol) polarization free energy of solvation -27.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds