Wall clock time and date at job start Tue Mar 31 2020 05:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00135 * 2 1 4 4 H 1.48504 * 109.47104 * 239.99795 * 3 2 1 5 5 H 1.48504 * 109.47118 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47293 * 119.99549 * 3 2 1 7 7 C 1.37877 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00144 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99843 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47112 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47213 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47213 * 179.97438 * 11 10 9 13 13 C 1.50696 * 109.47110 * 180.02562 * 12 11 10 14 14 O 1.21281 * 120.00042 * 359.97438 * 13 12 11 15 15 N 1.34776 * 120.00079 * 180.02562 * 13 12 11 16 16 C 1.46496 * 120.00347 * 180.02562 * 15 13 12 17 17 C 1.53000 * 109.47378 * 179.97438 * 16 15 13 18 18 C 1.50706 * 109.47116 * 179.97438 * 17 16 15 19 19 C 1.33391 * 125.19937 * 90.00083 * 18 17 16 20 20 C 1.38423 * 114.92045 * 179.97438 * 19 18 17 21 21 C 1.33390 * 114.91979 * 359.97438 * 20 19 18 22 22 S 1.75878 * 125.20693 * 269.69344 * 18 17 16 23 23 H 0.97000 * 119.99660 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47052 * 59.99395 * 9 7 2 25 25 H 1.09000 * 109.46921 * 299.99435 * 9 7 2 26 26 H 1.09008 * 109.47070 * 59.99713 * 10 9 7 27 27 H 1.09003 * 109.46707 * 300.00103 * 10 9 7 28 28 H 1.09005 * 109.46552 * 60.00048 * 11 10 9 29 29 H 1.08991 * 109.47305 * 300.00159 * 11 10 9 30 30 H 1.09000 * 109.47214 * 59.99786 * 12 11 10 31 31 H 1.09000 * 109.46955 * 300.00002 * 12 11 10 32 32 H 0.97001 * 120.00169 * 359.97438 * 15 13 12 33 33 H 1.09000 * 109.47518 * 59.99389 * 16 15 13 34 34 H 1.09008 * 109.47096 * 300.00066 * 16 15 13 35 35 H 1.09000 * 109.46884 * 60.00202 * 17 16 15 36 36 H 1.09000 * 109.46955 * 299.99518 * 17 16 15 37 37 H 1.07995 * 122.54106 * 359.95411 * 19 18 17 38 38 H 1.08001 * 122.53959 * 180.02562 * 20 19 18 39 39 H 1.07998 * 125.20163 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 6 2.4745 -6.1500 0.0005 13 6 1.7210 -7.4551 0.0005 14 8 0.5081 -7.4551 0.0015 15 7 2.3948 -8.6223 0.0005 16 6 1.6624 -9.8910 0.0000 17 6 2.6566 -11.0540 -0.0006 18 6 1.9030 -12.3591 -0.0005 19 6 1.5182 -13.0248 -1.0905 20 6 0.8377 -14.2047 -0.8434 21 6 0.6704 -14.4973 0.4472 22 16 1.4032 -13.2413 1.4366 23 1 -0.4849 0.8401 -0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8903 26 1 2.8720 -3.6043 0.8906 27 1 2.8719 -3.6043 -0.8895 28 1 0.8533 -5.0450 -0.8886 29 1 0.8539 -5.0446 0.8913 30 1 3.1018 -6.0922 0.8900 31 1 3.1005 -6.0923 -0.8899 32 1 3.3648 -8.6224 0.0002 33 1 1.0359 -9.9486 -0.8902 34 1 1.0353 -9.9490 0.8897 35 1 3.2832 -10.9966 0.8895 36 1 3.2832 -10.9958 -0.8906 37 1 1.7218 -12.6700 -2.0900 38 1 0.4709 -14.8405 -1.6356 39 1 0.1658 -15.3736 0.8265 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588147353.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:50 Heat of formation + Delta-G solvation = -38.167769 kcal Electronic energy + Delta-G solvation = -18068.358924 eV Core-core repulsion = 15101.382323 eV Total energy + Delta-G solvation = -2966.976601 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.70972 -38.35429 -35.69710 -34.78628 -32.71010 -32.32904 -29.81316 -28.09218 -25.75008 -24.39547 -22.75649 -22.01995 -20.34815 -19.94155 -19.61034 -17.53234 -16.68587 -16.26950 -16.07927 -15.90454 -15.66641 -14.92049 -14.44238 -13.86343 -13.81704 -13.37466 -13.21690 -12.86051 -12.70699 -12.53647 -12.23855 -12.13701 -11.65922 -11.58237 -11.56621 -11.09107 -10.94881 -10.52115 -10.50024 -10.38286 -9.82230 -9.58577 -9.20973 -9.19576 -9.05892 -8.95815 -8.84572 -8.28204 -5.93046 -3.95609 0.58700 1.23730 1.61606 2.34826 2.74594 3.10978 3.36666 3.40974 3.43229 4.38740 4.50618 4.54709 4.60654 4.70943 4.95874 5.00079 5.17852 5.25189 5.34998 5.38394 5.42158 5.49522 5.65819 5.74976 5.88679 5.90120 6.09109 6.16700 6.28644 6.33729 6.57550 6.86859 7.04943 7.22576 7.42614 7.76211 7.92728 8.08486 8.27592 8.50112 9.11928 9.67777 11.18220 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.063331 B = 0.001961 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.014652 B =14278.331003 C =14367.711819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.104 4.104 12 C -0.138 4.138 13 C 0.511 3.489 14 O -0.534 6.534 15 N -0.741 5.741 16 C 0.124 3.876 17 C -0.060 4.060 18 C -0.173 4.173 19 C -0.135 4.135 20 C -0.134 4.134 21 C -0.215 4.215 22 S 0.102 5.898 23 H 0.260 0.740 24 H 0.016 0.984 25 H 0.016 0.984 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.400 0.600 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.920 -30.776 0.014 31.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.142 4.142 12 C -0.178 4.178 13 C 0.299 3.701 14 O -0.409 6.409 15 N -0.395 5.395 16 C -0.001 4.001 17 C -0.099 4.099 18 C -0.291 4.291 19 C -0.166 4.166 20 C -0.165 4.165 21 C -0.351 4.351 22 S 0.365 5.635 23 H 0.070 0.930 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.234 0.766 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.100 0.900 36 H 0.108 0.892 37 H 0.158 0.842 38 H 0.158 0.842 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 5.995 -30.433 1.579 31.058 hybrid contribution 0.707 0.511 -1.519 1.752 sum 6.703 -29.923 0.060 30.664 Atomic orbital electron populations 1.69967 1.06038 1.26599 1.50851 1.25048 0.94853 0.99223 0.95489 0.86666 0.79563 0.83261 0.78523 1.20307 1.21328 1.20301 1.21250 0.92940 0.91219 1.50497 0.92808 1.19097 0.94073 0.91262 0.97322 1.21652 0.99075 0.94018 1.00053 1.21453 0.97037 0.92712 1.02971 1.21794 1.00086 0.91945 1.03991 1.21120 0.88469 0.85541 0.74978 1.90716 1.14281 1.87659 1.48284 1.46083 1.10248 1.05630 1.77495 1.21283 0.94212 0.81589 1.02984 1.20312 0.96837 0.88673 1.04104 1.24265 1.07453 1.01434 0.95968 1.20179 1.01255 0.95711 0.99434 1.20190 1.01683 0.98099 0.96487 1.25652 1.08409 1.04092 0.96899 1.84400 1.53767 1.15785 1.09504 0.92999 0.96591 0.96583 0.93484 0.93477 0.91814 0.91804 0.89116 0.89120 0.76617 0.91190 0.91374 0.89977 0.89160 0.84153 0.84223 0.81886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.71 13.29 55.43 0.74 -26.98 16 2 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 11 C -0.10 -1.88 4.50 -26.73 -0.12 -2.00 16 12 C -0.14 -1.83 5.70 -27.89 -0.16 -1.98 16 13 C 0.51 7.14 7.83 -10.99 -0.09 7.05 16 14 O -0.53 -9.94 15.98 5.56 0.09 -9.85 16 15 N -0.74 -7.17 5.56 -60.30 -0.33 -7.50 16 16 C 0.12 1.15 5.66 -4.04 -0.02 1.13 16 17 C -0.06 -0.38 5.82 -27.88 -0.16 -0.55 16 18 C -0.17 -1.32 5.76 -36.00 -0.21 -1.53 16 19 C -0.14 -0.99 10.05 -41.21 -0.41 -1.41 16 20 C -0.13 -0.93 10.18 -41.21 -0.42 -1.34 16 21 C -0.21 -1.47 11.23 29.04 0.33 -1.14 16 22 S 0.10 0.77 23.33 -107.50 -2.51 -1.74 16 23 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.94 8.14 -51.92 -0.42 0.51 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 29 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 30 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.40 2.53 8.47 -40.82 -0.35 2.19 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 38 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 39 H 0.16 0.77 8.06 -52.49 -0.42 0.35 16 LS Contribution 346.75 15.07 5.23 5.23 Total: -1.00 -34.62 346.75 -9.99 -44.61 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -6.22 Total: -3.04 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: -1.95 Total: -17.74 kcal Atomic # 7 Polarization: -34.88 SS G_CDS: 0.40 Total: -34.48 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.09 Total: -9.85 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Atomic # 16 Polarization: 0.77 SS G_CDS: -2.51 Total: -1.74 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.62 -9.99 -44.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588147353.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.444 kcal (2) G-P(sol) polarization free energy of solvation -34.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds