Wall clock time and date at job start Tue Mar 31 2020 05:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00135 * 2 1 4 4 H 1.48504 * 109.47104 * 239.99795 * 3 2 1 5 5 H 1.48504 * 109.47118 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47293 * 119.99549 * 3 2 1 7 7 C 1.37877 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00144 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99843 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47112 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47213 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47213 * 179.97438 * 11 10 9 13 13 C 1.50696 * 109.47110 * 180.02562 * 12 11 10 14 14 O 1.21281 * 120.00042 * 359.97438 * 13 12 11 15 15 N 1.34776 * 120.00079 * 180.02562 * 13 12 11 16 16 C 1.46496 * 120.00347 * 180.02562 * 15 13 12 17 17 C 1.53000 * 109.47378 * 179.97438 * 16 15 13 18 18 C 1.50706 * 109.47116 * 179.97438 * 17 16 15 19 19 C 1.33391 * 125.19937 * 90.00083 * 18 17 16 20 20 C 1.38423 * 114.92045 * 179.97438 * 19 18 17 21 21 C 1.33390 * 114.91979 * 359.97438 * 20 19 18 22 22 S 1.75878 * 125.20693 * 269.69344 * 18 17 16 23 23 H 0.97000 * 119.99660 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47052 * 59.99395 * 9 7 2 25 25 H 1.09000 * 109.46921 * 299.99435 * 9 7 2 26 26 H 1.09008 * 109.47070 * 59.99713 * 10 9 7 27 27 H 1.09003 * 109.46707 * 300.00103 * 10 9 7 28 28 H 1.09005 * 109.46552 * 60.00048 * 11 10 9 29 29 H 1.08991 * 109.47305 * 300.00159 * 11 10 9 30 30 H 1.09000 * 109.47214 * 59.99786 * 12 11 10 31 31 H 1.09000 * 109.46955 * 300.00002 * 12 11 10 32 32 H 0.97001 * 120.00169 * 359.97438 * 15 13 12 33 33 H 1.09000 * 109.47518 * 59.99389 * 16 15 13 34 34 H 1.09008 * 109.47096 * 300.00066 * 16 15 13 35 35 H 1.09000 * 109.46884 * 60.00202 * 17 16 15 36 36 H 1.09000 * 109.46955 * 299.99518 * 17 16 15 37 37 H 1.07995 * 122.54106 * 359.95411 * 19 18 17 38 38 H 1.08001 * 122.53959 * 180.02562 * 20 19 18 39 39 H 1.07998 * 125.20163 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 6 2.4745 -6.1500 0.0005 13 6 1.7210 -7.4551 0.0005 14 8 0.5081 -7.4551 0.0015 15 7 2.3948 -8.6223 0.0005 16 6 1.6624 -9.8910 0.0000 17 6 2.6566 -11.0540 -0.0006 18 6 1.9030 -12.3591 -0.0005 19 6 1.5182 -13.0248 -1.0905 20 6 0.8377 -14.2047 -0.8434 21 6 0.6704 -14.4973 0.4472 22 16 1.4032 -13.2413 1.4366 23 1 -0.4849 0.8401 -0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8903 26 1 2.8720 -3.6043 0.8906 27 1 2.8719 -3.6043 -0.8895 28 1 0.8533 -5.0450 -0.8886 29 1 0.8539 -5.0446 0.8913 30 1 3.1018 -6.0922 0.8900 31 1 3.1005 -6.0923 -0.8899 32 1 3.3648 -8.6224 0.0002 33 1 1.0359 -9.9486 -0.8902 34 1 1.0353 -9.9490 0.8897 35 1 3.2832 -10.9966 0.8895 36 1 3.2832 -10.9958 -0.8906 37 1 1.7218 -12.6700 -2.0900 38 1 0.4709 -14.8405 -1.6356 39 1 0.1658 -15.3736 0.8265 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588147353.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:49 Heat of formation + Delta-G solvation = -59.799333 kcal Electronic energy + Delta-G solvation = -18069.296939 eV Core-core repulsion = 15101.382323 eV Total energy + Delta-G solvation = -2967.914616 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.79083 -38.91167 -36.81314 -36.28010 -34.60004 -33.21698 -31.43504 -28.93519 -27.33931 -25.31976 -23.98448 -23.04514 -21.80186 -21.30224 -20.14696 -18.41185 -18.23754 -17.60863 -17.03825 -16.94446 -16.48235 -16.35362 -15.95140 -15.04118 -14.92222 -14.52324 -14.03295 -13.86270 -13.73756 -13.57631 -13.41014 -13.26542 -13.13935 -12.85074 -12.77544 -12.36338 -12.18954 -12.14485 -12.09776 -11.63444 -11.35970 -11.34694 -11.17121 -10.79039 -10.53575 -10.13230 -9.60040 -9.40909 -8.17648 -6.30001 0.04824 0.70773 1.08764 1.40860 1.45090 1.52916 1.66161 1.81302 2.22847 2.42947 3.14768 3.76452 3.92915 3.98296 4.03019 4.11229 4.17497 4.25728 4.44697 4.63694 4.67771 4.71292 4.73437 4.86875 4.87521 4.89223 5.00230 5.20990 5.22596 5.34918 5.35152 5.38477 5.45660 5.58451 5.58733 5.79383 5.89132 6.26136 6.57312 6.88414 7.29520 7.39493 8.94362 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.063331 B = 0.001961 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.014652 B =14278.331003 C =14367.711819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.971 3.029 4 H -0.264 1.264 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.542 4.542 8 H 0.067 0.933 9 C 0.017 3.983 10 C -0.096 4.096 11 C -0.097 4.097 12 C -0.127 4.127 13 C 0.509 3.491 14 O -0.591 6.591 15 N -0.717 5.717 16 C 0.126 3.874 17 C -0.048 4.048 18 C -0.186 4.186 19 C -0.142 4.142 20 C -0.145 4.145 21 C -0.218 4.218 22 S 0.077 5.923 23 H 0.263 0.737 24 H -0.016 1.016 25 H -0.016 1.016 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.041 0.959 29 H 0.041 0.959 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.421 0.579 33 H 0.056 0.944 34 H 0.049 0.951 35 H 0.095 0.905 36 H 0.111 0.889 37 H 0.153 0.847 38 H 0.158 0.842 39 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.809 -31.433 -0.348 32.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.795 3.205 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.580 4.580 8 H 0.085 0.915 9 C -0.020 4.020 10 C -0.133 4.133 11 C -0.136 4.136 12 C -0.167 4.167 13 C 0.298 3.702 14 O -0.471 6.471 15 N -0.371 5.371 16 C 0.002 3.998 17 C -0.087 4.087 18 C -0.303 4.303 19 C -0.173 4.173 20 C -0.175 4.175 21 C -0.353 4.353 22 S 0.341 5.659 23 H 0.071 0.929 24 H 0.002 0.998 25 H 0.002 0.998 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.138 0.862 31 H 0.139 0.861 32 H 0.259 0.741 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.113 0.887 36 H 0.129 0.871 37 H 0.171 0.829 38 H 0.175 0.825 39 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 8.953 -31.132 1.217 32.417 hybrid contribution -0.252 0.643 -1.418 1.577 sum 8.701 -30.489 -0.201 31.707 Atomic orbital electron populations 1.70132 1.08082 1.27795 1.51829 1.26118 0.95811 1.03808 0.94816 0.85421 0.78144 0.77630 0.79347 1.18882 1.21119 1.18898 1.21735 0.93774 0.92200 1.50302 0.91483 1.19068 0.94739 0.93888 0.94270 1.21451 0.97794 0.92666 1.01399 1.21254 0.97574 0.93803 1.00930 1.21673 0.98861 0.89225 1.06895 1.21254 0.87749 0.86840 0.74390 1.90706 1.16724 1.88444 1.51264 1.45847 1.11294 1.04622 1.75335 1.21259 0.94832 0.82333 1.01425 1.20255 0.96052 0.86668 1.05770 1.24435 1.08091 1.01996 0.95828 1.20464 1.00916 0.95856 1.00028 1.20481 1.01608 0.98321 0.97054 1.25942 1.08189 1.04341 0.96815 1.84456 1.54392 1.16684 1.10400 0.92877 0.99763 0.99792 0.91996 0.91938 0.93975 0.94033 0.86160 0.86069 0.74147 0.92599 0.93269 0.88666 0.87061 0.82898 0.82455 0.80125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.48 13.29 21.45 0.28 -59.20 16 2 C -0.01 -0.50 5.46 84.65 0.46 -0.04 16 3 Si 0.97 44.97 29.54 68.60 2.03 47.00 16 4 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 5 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 6 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.54 -31.62 9.11 25.60 0.23 -31.38 16 8 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 9 C 0.02 0.97 4.97 29.85 0.15 1.12 16 10 C -0.10 -3.91 5.15 30.59 0.16 -3.75 16 11 C -0.10 -3.54 4.50 30.59 0.14 -3.40 16 12 C -0.13 -3.05 5.70 29.85 0.17 -2.88 16 13 C 0.51 13.66 7.83 87.66 0.69 14.35 16 14 O -0.59 -22.55 15.98 -3.03 -0.05 -22.60 16 15 N -0.72 -12.37 5.56 -463.07 -2.57 -14.94 16 16 C 0.13 2.23 5.66 86.38 0.49 2.71 16 17 C -0.05 -0.52 5.82 29.85 0.17 -0.34 16 18 C -0.19 -2.60 5.76 24.59 0.14 -2.46 16 19 C -0.14 -1.89 10.05 21.22 0.21 -1.68 16 20 C -0.14 -1.80 10.18 21.22 0.22 -1.58 16 21 C -0.22 -2.74 11.23 66.72 0.75 -1.99 16 22 S 0.08 1.12 23.33 -56.49 -1.32 -0.19 16 23 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 24 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 25 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 26 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 27 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.04 1.68 8.10 -2.38 -0.02 1.66 16 29 H 0.04 1.66 8.10 -2.39 -0.02 1.65 16 30 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.42 3.80 8.47 -92.71 -0.79 3.01 16 33 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 35 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 38 H 0.16 1.30 8.06 -2.91 -0.02 1.27 16 39 H 0.18 1.47 8.06 -2.91 -0.02 1.44 16 Total: -1.00 -78.11 346.75 2.59 -75.52 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: 0.24 Total: 5.74 kcal Atomic # 6 Polarization: -35.31 SS G_CDS: 3.98 Total: -31.33 kcal Atomic # 7 Polarization: -71.85 SS G_CDS: -2.29 Total: -74.14 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -0.05 Total: -22.60 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -1.32 Total: -0.19 kcal Total: -78.11 2.59 -75.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588147353.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.719 kcal (2) G-P(sol) polarization free energy of solvation -78.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds