Wall clock time and date at job start Tue Mar 31 2020 05:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33386 * 125.20043 * 2 1 4 4 C 1.38432 * 114.91918 * 179.97438 * 3 2 1 5 5 C 1.33386 * 114.92087 * 0.02562 * 4 3 2 6 6 C 1.50695 * 125.20514 * 180.02562 * 5 4 3 7 7 N 1.46505 * 109.47321 * 89.99458 * 6 5 4 8 8 C 1.34772 * 120.00085 * 180.02562 * 7 6 5 9 9 O 1.21280 * 120.00251 * 359.97438 * 8 7 6 10 10 C 1.50699 * 119.99941 * 180.02562 * 8 7 6 11 11 C 1.53006 * 109.47091 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47092 * 179.97438 * 11 10 8 13 13 C 1.52998 * 109.47149 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.47148 * 180.02562 * 13 12 11 15 15 H 1.08003 * 120.00138 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99850 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99423 * 180.02562 * 16 14 13 18 18 Si 1.86792 * 120.00327 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47020 * 89.99560 * 18 16 14 20 20 H 1.48497 * 109.47559 * 210.00075 * 18 16 14 21 21 H 1.48504 * 109.46928 * 330.00329 * 18 16 14 22 22 S 1.75882 * 125.20464 * 179.69172 * 2 1 3 23 23 H 1.09002 * 109.47152 * 90.00037 * 1 2 3 24 24 H 1.09001 * 109.46980 * 330.00137 * 1 2 3 25 25 H 1.09004 * 109.47113 * 210.00118 * 1 2 3 26 26 H 1.07997 * 122.54296 * 359.95309 * 3 2 1 27 27 H 1.08001 * 122.53810 * 179.97438 * 4 3 2 28 28 H 1.08999 * 109.47231 * 209.99979 * 6 5 4 29 29 H 1.09000 * 109.47136 * 329.99696 * 6 5 4 30 30 H 0.97001 * 119.99360 * 0.02562 * 7 6 5 31 31 H 1.08999 * 109.47350 * 300.00097 * 10 8 7 32 32 H 1.09003 * 109.47029 * 60.00354 * 10 8 7 33 33 H 1.08999 * 109.47307 * 300.00374 * 11 10 8 34 34 H 1.09003 * 109.46691 * 60.00397 * 11 10 8 35 35 H 1.08999 * 109.47421 * 300.00391 * 12 11 10 36 36 H 1.09000 * 109.46938 * 60.00103 * 12 11 10 37 37 H 1.09002 * 109.46683 * 300.00002 * 13 12 11 38 38 H 1.09000 * 109.47328 * 60.00082 * 13 12 11 39 39 H 0.97003 * 119.99856 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6380 0.8429 0.0006 5 6 3.9751 -0.4477 0.0005 6 6 5.3860 -0.9770 0.0016 7 7 5.8421 -1.1489 1.3832 8 6 7.0827 -1.6139 1.6303 9 8 7.8214 -1.8906 0.7091 10 6 7.5516 -1.7912 3.0515 11 6 8.9842 -2.3286 3.0526 12 6 9.4605 -2.5080 4.4954 13 6 10.8933 -3.0447 4.4965 14 6 11.3622 -3.2220 5.9177 15 1 10.7040 -2.9768 6.7381 16 6 12.6312 -3.6982 6.1705 17 7 13.0401 -3.8534 7.4108 18 14 13.7694 -4.1230 4.7517 19 1 14.5625 -2.9246 4.3775 20 1 14.6872 -5.2154 5.1632 21 1 12.9632 -4.5665 3.5861 22 16 2.5210 -1.4371 0.0077 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 0.8900 0.5138 25 1 -0.3633 -0.8900 0.5139 26 1 1.8669 2.0895 -0.0007 27 1 4.3721 1.6351 0.0002 28 1 5.4141 -1.9378 -0.5125 29 1 6.0393 -0.2713 -0.5115 30 1 5.2512 -0.9279 2.1199 31 1 7.5231 -0.8308 3.5661 32 1 6.8987 -2.4976 3.5641 33 1 9.0124 -3.2891 2.5381 34 1 9.6374 -1.6225 2.5399 35 1 9.4324 -1.5472 5.0095 36 1 8.8073 -3.2138 5.0085 37 1 10.9217 -4.0054 3.9824 38 1 11.5462 -2.3386 3.9835 39 1 13.9330 -4.1881 7.5888 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588151628.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:45 Heat of formation + Delta-G solvation = -35.240684 kcal Electronic energy + Delta-G solvation = -18205.909293 eV Core-core repulsion = 15239.059621 eV Total energy + Delta-G solvation = -2966.849673 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.80715 -38.44512 -35.40646 -34.84102 -32.64650 -32.33108 -30.32024 -28.71954 -26.01401 -24.60136 -23.13354 -21.97014 -20.34731 -20.00213 -19.30669 -17.60180 -16.78529 -16.52574 -16.13479 -15.80364 -15.36652 -14.53597 -14.39848 -14.16537 -13.77717 -13.61524 -13.52197 -13.03327 -12.62845 -12.58180 -12.44655 -12.18139 -12.03405 -11.88151 -11.73048 -11.12787 -11.08959 -10.71804 -10.51834 -10.03417 -9.81632 -9.62885 -9.45299 -9.27386 -9.10373 -8.93410 -8.88369 -8.47616 -5.98866 -3.96164 0.45740 1.14102 1.55395 2.23486 2.66111 3.22050 3.36796 3.43703 3.49977 4.23018 4.39282 4.51752 4.76556 4.79524 4.92013 5.01624 5.10805 5.24118 5.26424 5.32751 5.36464 5.37420 5.43729 5.72940 5.79583 5.81542 6.05306 6.06874 6.16905 6.19728 6.43819 6.70652 6.84586 7.01417 7.36198 7.40478 7.53198 7.86673 8.18415 8.60192 9.06212 9.64560 11.14615 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.047453 B = 0.002245 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.918495 B =12470.730326 C =12695.316399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.174 4.174 3 C -0.146 4.146 4 C -0.110 4.110 5 C -0.206 4.206 6 C 0.193 3.807 7 N -0.735 5.735 8 C 0.513 3.487 9 O -0.537 6.537 10 C -0.138 4.138 11 C -0.106 4.106 12 C -0.103 4.103 13 C -0.016 4.016 14 C -0.519 4.519 15 H 0.071 0.929 16 C 0.064 3.936 17 N -0.906 5.906 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.264 1.264 22 S 0.115 5.885 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.069 0.931 26 H 0.140 0.860 27 H 0.142 0.858 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.402 0.598 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.016 0.984 38 H 0.011 0.989 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.403 9.786 -16.615 33.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.292 4.292 3 C -0.175 4.175 4 C -0.142 4.142 5 C -0.323 4.323 6 C 0.068 3.932 7 N -0.389 5.389 8 C 0.301 3.699 9 O -0.412 6.412 10 C -0.178 4.178 11 C -0.144 4.144 12 C -0.140 4.140 13 C -0.053 4.053 14 C -0.557 4.557 15 H 0.089 0.911 16 C -0.137 4.137 17 N -0.545 5.545 18 Si 0.707 3.293 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.189 1.189 22 S 0.380 5.620 23 H 0.094 0.906 24 H 0.096 0.904 25 H 0.088 0.912 26 H 0.158 0.842 27 H 0.160 0.840 28 H 0.095 0.905 29 H 0.103 0.897 30 H 0.236 0.764 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.034 0.966 38 H 0.030 0.970 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -26.981 7.949 -17.184 32.962 hybrid contribution 0.627 1.461 -0.292 1.617 sum -26.355 9.410 -17.476 32.993 Atomic orbital electron populations 1.20372 0.87689 1.03357 1.02911 1.24629 1.00179 0.95958 1.08462 1.20096 0.92791 0.99408 1.05246 1.20189 0.96400 0.95894 1.01711 1.24448 0.98376 0.96782 1.12712 1.19579 0.87766 1.01281 0.84579 1.46212 1.16184 1.68630 1.07894 1.21121 0.80534 0.75677 0.92574 1.90707 1.54310 1.49453 1.46774 1.21780 1.00177 1.03702 0.92151 1.21487 0.92437 1.01440 0.99052 1.21477 0.98740 1.00629 0.93187 1.19581 0.92262 0.95823 0.97656 1.21188 0.99671 1.43299 0.91523 0.91110 1.25050 0.98053 0.95115 0.95467 1.69924 1.18932 1.46951 1.18732 0.86766 0.80809 0.78322 0.83361 1.20325 1.21471 1.18901 1.84431 0.96002 1.08912 1.72685 0.90572 0.90366 0.91160 0.84206 0.84036 0.90550 0.89671 0.76371 0.88915 0.88925 0.91779 0.91788 0.92860 0.92831 0.96615 0.97046 0.92840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.37 10.38 36.01 0.37 0.00 16 2 C -0.17 -1.18 6.51 -36.00 -0.23 -1.42 16 3 C -0.15 -0.98 10.05 -41.21 -0.41 -1.40 16 4 C -0.11 -0.82 10.05 -41.21 -0.41 -1.23 16 5 C -0.21 -1.68 5.88 -36.01 -0.21 -1.89 16 6 C 0.19 1.83 6.16 -5.19 -0.03 1.80 16 7 N -0.74 -7.32 5.55 -61.47 -0.34 -7.67 16 8 C 0.51 6.87 7.83 -10.99 -0.09 6.79 16 9 O -0.54 -9.40 15.98 5.56 0.09 -9.31 16 10 C -0.14 -1.76 5.70 -27.88 -0.16 -1.92 16 11 C -0.11 -1.80 4.50 -26.73 -0.12 -1.92 16 12 C -0.10 -2.04 5.15 -26.73 -0.14 -2.18 16 13 C -0.02 -0.39 4.04 -27.88 -0.11 -0.51 16 14 C -0.52 -15.20 9.66 -34.44 -0.33 -15.54 16 15 H 0.07 2.20 7.99 -52.48 -0.42 1.78 16 16 C 0.06 1.91 5.47 -17.82 -0.10 1.82 16 17 N -0.91 -28.54 13.96 55.43 0.77 -27.77 16 18 Si 0.88 22.53 27.47 -169.99 -4.67 17.86 16 19 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 21 H -0.26 -6.58 6.54 56.52 0.37 -6.21 16 22 S 0.12 0.88 23.31 -107.50 -2.51 -1.63 16 23 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 24 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.14 0.70 8.06 -52.49 -0.42 0.27 16 27 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.40 3.12 8.46 -40.82 -0.35 2.77 16 31 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 34 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 35 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 38 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 39 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 343.53 15.07 5.18 5.18 Total: -1.00 -34.18 343.53 -9.65 -43.82 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -6.19 Total: -2.91 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: -1.98 Total: -17.58 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: 0.43 Total: -35.44 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.09 Total: -9.31 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.67 Total: 17.86 kcal Atomic # 16 Polarization: 0.88 SS G_CDS: -2.51 Total: -1.63 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.18 -9.65 -43.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588151628.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.582 kcal (2) G-P(sol) polarization free energy of solvation -34.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds