Wall clock time and date at job start Tue Mar 31 2020 05:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33386 * 125.20043 * 2 1 4 4 C 1.38432 * 114.91918 * 179.97438 * 3 2 1 5 5 C 1.33386 * 114.92087 * 0.02562 * 4 3 2 6 6 C 1.50695 * 125.20514 * 180.02562 * 5 4 3 7 7 N 1.46505 * 109.47321 * 89.99458 * 6 5 4 8 8 C 1.34772 * 120.00085 * 180.02562 * 7 6 5 9 9 O 1.21280 * 120.00251 * 359.97438 * 8 7 6 10 10 C 1.50699 * 119.99941 * 180.02562 * 8 7 6 11 11 C 1.53006 * 109.47091 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47092 * 179.97438 * 11 10 8 13 13 C 1.52998 * 109.47149 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.47148 * 180.02562 * 13 12 11 15 15 H 1.08003 * 120.00138 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99850 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99423 * 180.02562 * 16 14 13 18 18 Si 1.86792 * 120.00327 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47020 * 89.99560 * 18 16 14 20 20 H 1.48497 * 109.47559 * 210.00075 * 18 16 14 21 21 H 1.48504 * 109.46928 * 330.00329 * 18 16 14 22 22 S 1.75882 * 125.20464 * 179.69172 * 2 1 3 23 23 H 1.09002 * 109.47152 * 90.00037 * 1 2 3 24 24 H 1.09001 * 109.46980 * 330.00137 * 1 2 3 25 25 H 1.09004 * 109.47113 * 210.00118 * 1 2 3 26 26 H 1.07997 * 122.54296 * 359.95309 * 3 2 1 27 27 H 1.08001 * 122.53810 * 179.97438 * 4 3 2 28 28 H 1.08999 * 109.47231 * 209.99979 * 6 5 4 29 29 H 1.09000 * 109.47136 * 329.99696 * 6 5 4 30 30 H 0.97001 * 119.99360 * 0.02562 * 7 6 5 31 31 H 1.08999 * 109.47350 * 300.00097 * 10 8 7 32 32 H 1.09003 * 109.47029 * 60.00354 * 10 8 7 33 33 H 1.08999 * 109.47307 * 300.00374 * 11 10 8 34 34 H 1.09003 * 109.46691 * 60.00397 * 11 10 8 35 35 H 1.08999 * 109.47421 * 300.00391 * 12 11 10 36 36 H 1.09000 * 109.46938 * 60.00103 * 12 11 10 37 37 H 1.09002 * 109.46683 * 300.00002 * 13 12 11 38 38 H 1.09000 * 109.47328 * 60.00082 * 13 12 11 39 39 H 0.97003 * 119.99856 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6380 0.8429 0.0006 5 6 3.9751 -0.4477 0.0005 6 6 5.3860 -0.9770 0.0016 7 7 5.8421 -1.1489 1.3832 8 6 7.0827 -1.6139 1.6303 9 8 7.8214 -1.8906 0.7091 10 6 7.5516 -1.7912 3.0515 11 6 8.9842 -2.3286 3.0526 12 6 9.4605 -2.5080 4.4954 13 6 10.8933 -3.0447 4.4965 14 6 11.3622 -3.2220 5.9177 15 1 10.7040 -2.9768 6.7381 16 6 12.6312 -3.6982 6.1705 17 7 13.0401 -3.8534 7.4108 18 14 13.7694 -4.1230 4.7517 19 1 14.5625 -2.9246 4.3775 20 1 14.6872 -5.2154 5.1632 21 1 12.9632 -4.5665 3.5861 22 16 2.5210 -1.4371 0.0077 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 0.8900 0.5138 25 1 -0.3633 -0.8900 0.5139 26 1 1.8669 2.0895 -0.0007 27 1 4.3721 1.6351 0.0002 28 1 5.4141 -1.9378 -0.5125 29 1 6.0393 -0.2713 -0.5115 30 1 5.2512 -0.9279 2.1199 31 1 7.5231 -0.8308 3.5661 32 1 6.8987 -2.4976 3.5641 33 1 9.0124 -3.2891 2.5381 34 1 9.6374 -1.6225 2.5399 35 1 9.4324 -1.5472 5.0095 36 1 8.8073 -3.2138 5.0085 37 1 10.9217 -4.0054 3.9824 38 1 11.5462 -2.3386 3.9835 39 1 13.9330 -4.1881 7.5888 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588151628.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:44 Heat of formation + Delta-G solvation = -56.482931 kcal Electronic energy + Delta-G solvation = -18206.830426 eV Core-core repulsion = 15239.059621 eV Total energy + Delta-G solvation = -2967.770806 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.82957 -39.03408 -36.76245 -35.98849 -34.60010 -33.05127 -31.87297 -29.58259 -27.50104 -25.40489 -23.89938 -23.36710 -21.75443 -21.35310 -19.88726 -18.85127 -18.33310 -17.56945 -17.02280 -16.89669 -16.30906 -15.97375 -15.75303 -14.99354 -14.77993 -14.59479 -14.57181 -14.06899 -13.77302 -13.73131 -13.60465 -13.42910 -12.99612 -12.89279 -12.79686 -12.42124 -12.33112 -12.06918 -11.75247 -11.66443 -11.52038 -11.34137 -11.26127 -10.91597 -10.75663 -10.18598 -9.51002 -9.45447 -8.29393 -6.32340 -0.10010 0.58806 1.00980 1.35001 1.36514 1.49461 1.62790 1.68334 2.35315 2.36221 3.05898 3.58781 3.84867 3.96192 4.04013 4.14413 4.20231 4.38992 4.51903 4.64292 4.66011 4.69738 4.74086 4.78031 4.78677 4.87129 5.09983 5.15446 5.20701 5.21819 5.25984 5.28610 5.35765 5.56760 5.61249 5.66456 5.69179 6.29906 6.49966 6.75561 7.21776 7.32339 8.87133 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.047453 B = 0.002245 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.918495 B =12470.730326 C =12695.316399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.171 4.171 3 C -0.155 4.155 4 C -0.106 4.106 5 C -0.219 4.219 6 C 0.196 3.804 7 N -0.717 5.717 8 C 0.515 3.485 9 O -0.584 6.584 10 C -0.131 4.131 11 C -0.098 4.098 12 C -0.094 4.094 13 C -0.018 4.018 14 C -0.530 4.530 15 H 0.037 0.963 16 C 0.002 3.998 17 N -0.950 5.950 18 Si 0.948 3.052 19 H -0.267 1.267 20 H -0.282 1.282 21 H -0.253 1.253 22 S 0.096 5.904 23 H 0.085 0.915 24 H 0.092 0.908 25 H 0.073 0.927 26 H 0.160 0.840 27 H 0.152 0.848 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.415 0.585 31 H 0.117 0.883 32 H 0.115 0.885 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.014 0.986 38 H 0.013 0.987 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.956 10.742 -17.887 35.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.289 4.289 3 C -0.185 4.185 4 C -0.138 4.138 5 C -0.336 4.336 6 C 0.071 3.929 7 N -0.371 5.371 8 C 0.303 3.697 9 O -0.464 6.464 10 C -0.170 4.170 11 C -0.136 4.136 12 C -0.132 4.132 13 C -0.055 4.055 14 C -0.568 4.568 15 H 0.055 0.945 16 C -0.194 4.194 17 N -0.591 5.591 18 Si 0.772 3.228 19 H -0.192 1.192 20 H -0.207 1.207 21 H -0.176 1.176 22 S 0.360 5.640 23 H 0.103 0.897 24 H 0.110 0.890 25 H 0.092 0.908 26 H 0.177 0.823 27 H 0.170 0.830 28 H 0.084 0.916 29 H 0.100 0.900 30 H 0.252 0.748 31 H 0.135 0.865 32 H 0.133 0.867 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.032 0.968 38 H 0.032 0.968 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -28.590 8.926 -18.444 35.174 hybrid contribution 0.997 1.212 0.166 1.578 sum -27.593 10.138 -18.278 34.615 Atomic orbital electron populations 1.20485 0.86021 1.04230 1.03764 1.24986 1.01289 0.95229 1.07370 1.20337 0.92479 1.00378 1.05257 1.20411 0.97137 0.95787 1.00454 1.24264 0.97624 0.97171 1.14578 1.19504 0.88695 1.00747 0.83932 1.46061 1.15227 1.66979 1.08812 1.21173 0.81021 0.75270 0.92235 1.90695 1.55821 1.51857 1.48018 1.21686 0.97681 1.05367 0.92305 1.21286 0.95072 1.00865 0.96351 1.21341 0.95855 1.00596 0.95380 1.19584 0.95336 0.96031 0.94556 1.21547 0.99423 1.42835 0.93003 0.94478 1.26009 1.00005 0.95111 0.98303 1.70064 1.19730 1.48235 1.21087 0.85682 0.78637 0.78536 0.79960 1.19186 1.20729 1.17632 1.84489 0.96411 1.09919 1.73148 0.89656 0.88952 0.90815 0.82277 0.83033 0.91612 0.90023 0.74808 0.86491 0.86674 0.93010 0.92835 0.92396 0.92491 0.96807 0.96841 0.92531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.55 10.38 71.24 0.74 0.19 16 2 C -0.17 -1.97 6.51 24.59 0.16 -1.81 16 3 C -0.16 -1.74 10.05 21.22 0.21 -1.53 16 4 C -0.11 -1.37 10.05 21.22 0.21 -1.16 16 5 C -0.22 -3.30 5.88 24.59 0.14 -3.16 16 6 C 0.20 3.57 6.16 85.63 0.53 4.10 16 7 N -0.72 -13.16 5.55 -466.79 -2.59 -15.75 16 8 C 0.51 13.07 7.83 87.66 0.69 13.76 16 9 O -0.58 -20.27 15.98 -3.03 -0.05 -20.32 16 10 C -0.13 -3.02 5.70 29.85 0.17 -2.85 16 11 C -0.10 -3.18 4.50 30.60 0.14 -3.05 16 12 C -0.09 -3.64 5.15 30.59 0.16 -3.48 16 13 C -0.02 -0.86 4.04 29.85 0.12 -0.74 16 14 C -0.53 -31.46 9.66 25.60 0.25 -31.21 16 15 H 0.04 2.38 7.99 -2.91 -0.02 2.35 16 16 C 0.00 0.14 5.47 84.65 0.46 0.60 16 17 N -0.95 -60.83 13.96 21.45 0.30 -60.53 16 18 Si 0.95 46.29 27.47 68.60 1.88 48.17 16 19 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 20 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 21 H -0.25 -11.74 6.54 99.48 0.65 -11.09 16 22 S 0.10 1.36 23.31 -56.49 -1.32 0.05 16 23 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 24 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 25 H 0.07 0.44 8.14 -2.38 -0.02 0.42 16 26 H 0.16 1.12 8.06 -2.91 -0.02 1.10 16 27 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 28 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.42 5.48 8.46 -92.71 -0.78 4.70 16 31 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.12 2.18 8.14 -2.39 -0.02 2.17 16 33 H 0.05 1.81 8.10 -2.39 -0.02 1.79 16 34 H 0.05 1.85 8.10 -2.39 -0.02 1.83 16 35 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.01 0.67 7.20 -2.39 -0.02 0.65 16 38 H 0.01 0.64 7.57 -2.39 -0.02 0.63 16 39 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 Total: -1.00 -74.36 343.53 2.40 -71.96 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: 0.19 Total: 6.78 kcal Atomic # 6 Polarization: -34.33 SS G_CDS: 3.98 Total: -30.35 kcal Atomic # 7 Polarization: -73.99 SS G_CDS: -2.29 Total: -76.28 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -0.05 Total: -20.32 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 1.88 Total: 48.17 kcal Atomic # 16 Polarization: 1.36 SS G_CDS: -1.32 Total: 0.05 kcal Total: -74.36 2.40 -71.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588151628.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.474 kcal (2) G-P(sol) polarization free energy of solvation -74.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds