Wall clock time and date at job start Tue Mar 31 2020 05:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38429 * 122.53885 * 2 1 4 4 C 1.33387 * 114.91542 * 180.27438 * 3 2 1 5 5 S 1.75885 * 109.59583 * 359.77549 * 4 3 2 6 6 C 1.33384 * 122.53698 * 179.83716 * 2 1 3 7 7 C 1.50703 * 125.20461 * 0.02562 * 6 2 1 8 8 N 1.46505 * 109.47064 * 89.71995 * 7 6 2 9 9 C 1.34771 * 119.99622 * 179.97438 * 8 7 6 10 10 O 1.21280 * 120.00597 * 0.02562 * 9 8 7 11 11 C 1.50701 * 119.99622 * 179.97438 * 9 8 7 12 12 C 1.52997 * 109.47212 * 180.02562 * 11 9 8 13 13 C 1.53005 * 109.47452 * 179.97438 * 12 11 9 14 14 C 1.53002 * 109.47197 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.46958 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99601 * 0.02562 * 15 14 13 17 17 C 1.37871 * 119.99691 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00516 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99744 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47094 * 90.00225 * 19 17 15 21 21 H 1.48498 * 109.47121 * 210.00323 * 19 17 15 22 22 H 1.48505 * 109.46998 * 330.00223 * 19 17 15 23 23 H 1.09000 * 109.46974 * 270.16982 * 1 2 3 24 24 H 1.08999 * 109.46782 * 30.16202 * 1 2 3 25 25 H 1.08997 * 109.47095 * 150.16544 * 1 2 3 26 26 H 1.07991 * 122.54231 * 0.04681 * 3 2 1 27 27 H 1.08002 * 125.20018 * 179.75340 * 4 3 2 28 28 H 1.09002 * 109.47152 * 329.72078 * 7 6 2 29 29 H 1.09001 * 109.46980 * 209.72179 * 7 6 2 30 30 H 0.96996 * 119.99606 * 0.02562 * 8 7 6 31 31 H 1.09001 * 109.47380 * 300.00190 * 11 9 8 32 32 H 1.09002 * 109.47060 * 60.00278 * 11 9 8 33 33 H 1.09001 * 109.47289 * 299.99918 * 12 11 9 34 34 H 1.09002 * 109.47153 * 60.00002 * 12 11 9 35 35 H 1.08998 * 109.47061 * 300.00668 * 13 12 11 36 36 H 1.09002 * 109.46668 * 60.00355 * 13 12 11 37 37 H 1.09001 * 109.47142 * 300.00233 * 14 13 12 38 38 H 1.09002 * 109.47097 * 60.00198 * 14 13 12 39 39 H 0.97002 * 120.00201 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2516 1.1670 0.0000 4 6 3.5737 0.9900 -0.0058 5 16 3.9386 -0.7305 -0.0052 6 6 2.2244 -1.1245 0.0032 7 6 1.6536 -2.5192 0.0066 8 7 1.4629 -2.9722 -1.3735 9 6 0.9605 -4.1989 -1.6167 10 8 0.6657 -4.9276 -0.6932 11 6 0.7638 -4.6646 -3.0364 12 6 0.1843 -6.0806 -3.0330 13 6 -0.0160 -6.5533 -4.4743 14 6 -0.5948 -7.9696 -4.4708 15 6 -0.7915 -8.4353 -5.8905 16 1 -0.5295 -7.7862 -6.7129 17 6 -1.3050 -9.6904 -6.1393 18 7 -1.6237 -10.4810 -5.1379 19 14 -1.5482 -10.2680 -7.8991 20 1 -0.3165 -10.9503 -8.3708 21 1 -2.6911 -11.2144 -7.9560 22 1 -1.8303 -9.0983 -8.7695 23 1 -0.3633 0.0030 1.0277 24 1 -0.3633 0.8885 -0.5164 25 1 -0.3633 -0.8914 -0.5112 26 1 1.7966 2.1464 0.0007 27 1 4.3078 1.7822 -0.0105 28 1 0.6944 -2.5180 0.5244 29 1 2.3418 -3.1922 0.5181 30 1 1.6990 -2.3895 -2.1122 31 1 0.0750 -3.9918 -3.5474 32 1 1.7227 -4.6653 -3.5547 33 1 0.8728 -6.7537 -2.5219 34 1 -0.7746 -6.0796 -2.5148 35 1 -0.7045 -5.8801 -4.9851 36 1 0.9428 -6.5543 -4.9929 37 1 0.0942 -8.6424 -3.9602 38 1 -1.5535 -7.9690 -3.9521 39 1 -1.9853 -11.3639 -5.3130 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588154020.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:50 Heat of formation + Delta-G solvation = -57.946772 kcal Electronic energy + Delta-G solvation = -18463.623823 eV Core-core repulsion = 15495.789540 eV Total energy + Delta-G solvation = -2967.834283 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.87302 -39.37517 -36.70234 -35.85443 -34.60250 -32.33122 -31.40609 -29.80667 -27.52650 -25.88667 -24.05918 -23.30697 -21.79911 -21.33863 -19.43437 -18.62408 -18.40868 -17.57762 -16.97412 -16.84420 -16.47090 -16.09609 -15.68548 -14.93925 -14.71849 -14.62094 -14.50107 -13.84290 -13.65327 -13.57999 -13.48575 -13.24742 -12.91725 -12.83702 -12.74915 -12.54063 -12.33402 -12.14817 -12.11965 -11.64521 -11.36682 -11.35759 -11.17964 -10.87137 -10.54348 -10.18121 -9.66681 -9.29523 -8.17980 -6.30161 -0.07165 0.65365 1.05828 1.40771 1.43161 1.54217 1.63223 1.66344 2.34050 2.43044 3.14634 3.60262 3.85945 4.03267 4.07066 4.12084 4.17724 4.46603 4.56654 4.58934 4.69203 4.70408 4.72112 4.79427 4.85496 4.89533 5.11469 5.12401 5.20552 5.30379 5.34279 5.41328 5.46825 5.57842 5.58443 5.79291 5.89062 6.26174 6.50979 6.88373 7.22880 7.39412 8.94271 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.040952 B = 0.002289 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.560673 B =12227.832538 C =12269.886328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.079 4.079 3 C -0.144 4.144 4 C -0.197 4.197 5 S 0.096 5.904 6 C -0.225 4.225 7 C 0.197 3.803 8 N -0.715 5.715 9 C 0.514 3.486 10 O -0.586 6.586 11 C -0.128 4.128 12 C -0.096 4.096 13 C -0.096 4.096 14 C 0.018 3.982 15 C -0.541 4.541 16 H 0.066 0.934 17 C -0.008 4.008 18 N -0.938 5.938 19 Si 0.970 3.030 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.259 1.259 23 H 0.077 0.923 24 H 0.084 0.916 25 H 0.060 0.940 26 H 0.163 0.837 27 H 0.189 0.811 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.415 0.585 31 H 0.120 0.880 32 H 0.118 0.882 33 H 0.042 0.958 34 H 0.044 0.956 35 H 0.061 0.939 36 H 0.060 0.940 37 H -0.016 1.016 38 H -0.015 1.015 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.461 29.208 9.524 32.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.093 4.093 3 C -0.174 4.174 4 C -0.333 4.333 5 S 0.361 5.639 6 C -0.343 4.343 7 C 0.072 3.928 8 N -0.368 5.368 9 C 0.302 3.698 10 O -0.466 6.466 11 C -0.167 4.167 12 C -0.134 4.134 13 C -0.133 4.133 14 C -0.019 4.019 15 C -0.579 4.579 16 H 0.084 0.916 17 C -0.205 4.205 18 N -0.579 5.579 19 Si 0.794 3.206 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.183 1.183 23 H 0.095 0.905 24 H 0.103 0.897 25 H 0.079 0.921 26 H 0.180 0.820 27 H 0.206 0.794 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.252 0.748 31 H 0.138 0.862 32 H 0.136 0.864 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.002 0.998 38 H 0.003 0.997 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.576 27.693 10.228 31.710 hybrid contribution -1.346 0.141 -0.643 1.498 sum 10.230 27.834 9.585 31.165 Atomic orbital electron populations 1.20634 0.88851 1.03447 1.03050 1.19213 0.98240 0.91622 1.00216 1.20320 0.92935 0.99885 1.04238 1.26011 1.00396 0.98837 1.08012 1.84516 1.04938 1.01648 1.72798 1.24127 0.96706 0.97873 1.15556 1.19454 1.00330 0.88982 0.84013 1.46023 1.65567 1.16469 1.08774 1.21205 0.75457 0.80861 0.92268 1.90704 1.52096 1.55863 1.47900 1.21675 1.05149 0.97546 0.92336 1.21250 1.00122 0.95233 0.96824 1.21448 1.00462 0.96320 0.95074 1.19064 0.94143 0.93207 0.95492 1.21754 1.41886 1.00550 0.93700 0.91580 1.26101 0.95216 0.97110 1.02062 1.70133 1.44895 1.09484 1.33346 0.85377 0.77820 0.78364 0.79046 1.19727 1.20941 1.18297 0.90450 0.89669 0.92085 0.82003 0.79388 0.90283 0.91854 0.74791 0.86234 0.86435 0.93885 0.93733 0.92019 0.92121 0.99754 0.99664 0.92861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.16 9.60 71.24 0.68 -0.48 16 2 C -0.08 -1.08 5.80 -20.92 -0.12 -1.20 16 3 C -0.14 -1.57 9.98 21.22 0.21 -1.36 16 4 C -0.20 -2.07 11.23 66.72 0.75 -1.32 16 5 S 0.10 1.35 23.33 -56.49 -1.32 0.04 16 6 C -0.23 -3.60 5.87 24.59 0.14 -3.46 16 7 C 0.20 3.89 5.53 85.63 0.47 4.36 16 8 N -0.71 -14.01 5.55 -466.78 -2.59 -16.60 16 9 C 0.51 14.01 7.83 87.66 0.69 14.70 16 10 O -0.59 -21.92 15.98 -3.03 -0.05 -21.97 16 11 C -0.13 -3.17 5.70 29.85 0.17 -3.00 16 12 C -0.10 -3.50 4.50 30.60 0.14 -3.36 16 13 C -0.10 -3.93 5.15 30.60 0.16 -3.77 16 14 C 0.02 1.00 4.97 29.85 0.15 1.15 16 15 C -0.54 -31.59 9.11 25.60 0.23 -31.36 16 16 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 17 C -0.01 -0.46 5.46 84.65 0.46 0.00 16 18 N -0.94 -59.45 13.29 21.44 0.28 -59.17 16 19 Si 0.97 45.06 29.54 68.60 2.03 47.08 16 20 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 21 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 22 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 23 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.08 0.71 8.13 -2.39 -0.02 0.69 16 25 H 0.06 0.83 7.26 -2.39 -0.02 0.82 16 26 H 0.16 1.05 8.06 -2.91 -0.02 1.02 16 27 H 0.19 1.01 8.06 -2.91 -0.02 0.98 16 28 H 0.08 1.66 7.33 -2.39 -0.02 1.64 16 29 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.42 5.86 8.46 -92.71 -0.78 5.07 16 31 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.04 1.72 8.10 -2.39 -0.02 1.70 16 34 H 0.04 1.77 8.10 -2.39 -0.02 1.75 16 35 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 37 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 38 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 39 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -75.08 344.42 2.74 -72.34 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: 0.25 Total: 7.37 kcal Atomic # 6 Polarization: -33.23 SS G_CDS: 4.14 Total: -29.10 kcal Atomic # 7 Polarization: -73.46 SS G_CDS: -2.30 Total: -75.76 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: -0.05 Total: -21.97 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Atomic # 16 Polarization: 1.35 SS G_CDS: -1.32 Total: 0.04 kcal Total: -75.08 2.74 -72.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588154020.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.389 kcal (2) G-P(sol) polarization free energy of solvation -75.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds