Wall clock time and date at job start Tue Mar 31 2020 05:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33387 * 122.54502 * 2 1 4 4 S 1.75881 * 109.59726 * 180.24346 * 3 2 1 5 5 C 1.75883 * 90.96912 * 359.73260 * 4 3 2 6 6 C 1.33386 * 109.59422 * 359.97438 * 5 4 3 7 7 C 1.50706 * 122.54021 * 180.02562 * 6 5 4 8 8 N 1.46500 * 109.46949 * 260.02338 * 7 6 5 9 9 C 1.34769 * 120.00237 * 180.02562 * 8 7 6 10 10 O 1.21282 * 119.99855 * 359.97438 * 9 8 7 11 11 C 1.50702 * 120.00461 * 180.02562 * 9 8 7 12 12 C 1.52996 * 109.47592 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47343 * 180.02562 * 12 11 9 14 14 C 1.52996 * 109.46969 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.46861 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00370 * 359.97438 * 15 14 13 17 17 C 1.37882 * 119.99790 * 180.02562 * 15 14 13 18 18 N 1.31508 * 120.00257 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99622 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47485 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47293 * 119.99809 * 19 17 15 22 22 H 1.48505 * 109.46854 * 239.99748 * 19 17 15 23 23 H 1.08996 * 109.46506 * 270.25320 * 1 2 3 24 24 H 1.08993 * 109.46761 * 30.25120 * 1 2 3 25 25 H 1.08999 * 109.47279 * 150.25533 * 1 2 3 26 26 H 1.08005 * 125.20274 * 359.97272 * 3 2 1 27 27 H 1.07998 * 125.20609 * 179.97438 * 5 4 3 28 28 H 1.09000 * 109.47318 * 20.01724 * 7 6 5 29 29 H 1.09000 * 109.47161 * 140.02354 * 7 6 5 30 30 H 0.97010 * 119.99909 * 359.97438 * 8 7 6 31 31 H 1.08996 * 109.47077 * 300.00146 * 11 9 8 32 32 H 1.09004 * 109.46818 * 59.99313 * 11 9 8 33 33 H 1.09004 * 109.47108 * 300.00035 * 12 11 9 34 34 H 1.09000 * 109.46870 * 59.99930 * 12 11 9 35 35 H 1.09000 * 109.46497 * 299.99836 * 13 12 11 36 36 H 1.08996 * 109.46876 * 60.00226 * 13 12 11 37 37 H 1.08996 * 109.47452 * 300.00062 * 14 13 12 38 38 H 1.09000 * 109.47054 * 59.99902 * 14 13 12 39 39 H 0.97002 * 120.00075 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2246 1.1244 0.0000 4 16 3.9387 0.7303 -0.0070 5 6 3.5737 -0.9902 -0.0015 6 6 2.2516 -1.1670 0.0056 7 6 1.6165 -2.5337 0.0124 8 7 1.1869 -2.8792 -1.3449 9 6 0.5882 -4.0632 -1.5814 10 8 0.4054 -4.8429 -0.6706 11 6 0.1468 -4.4189 -2.9777 12 6 -0.4981 -5.8063 -2.9710 13 6 -0.9456 -6.1677 -4.3887 14 6 -1.5899 -7.5554 -4.3820 15 6 -2.0313 -7.9110 -5.7783 16 1 -1.8689 -7.2166 -6.5893 17 6 -2.6434 -9.1226 -6.0203 18 7 -2.8415 -9.9681 -5.0326 19 14 -3.1898 -9.5637 -7.7512 20 1 -2.8540 -8.4507 -8.6751 21 1 -2.4932 -10.7995 -8.1905 22 1 -4.6572 -9.7914 -7.7641 23 1 -0.3632 0.0045 1.0277 24 1 -0.3632 0.8877 -0.5177 25 1 -0.3634 -0.8922 -0.5098 26 1 1.8156 2.1240 -0.0004 27 1 4.3077 -1.7824 -0.0035 28 1 2.3408 -3.2692 0.3624 29 1 0.7525 -2.5296 0.6769 30 1 1.3328 -2.2554 -2.0734 31 1 -0.5769 -3.6832 -3.3285 32 1 1.0111 -4.4235 -3.6419 33 1 0.2260 -6.5419 -2.6204 34 1 -1.3623 -5.8020 -2.3067 35 1 -1.6696 -5.4322 -4.7396 36 1 -0.0811 -6.1721 -5.0525 37 1 -0.8657 -8.2905 -4.0311 38 1 -2.4543 -7.5514 -3.7180 39 1 -3.2718 -10.8206 -5.2029 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588165400.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:16 Heat of formation + Delta-G solvation = -36.879803 kcal Electronic energy + Delta-G solvation = -18537.395347 eV Core-core repulsion = 15570.474597 eV Total energy + Delta-G solvation = -2966.920750 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.99981 -38.78910 -34.98572 -34.44332 -32.60518 -31.55761 -29.95083 -28.57805 -26.41434 -25.09459 -22.76533 -22.11350 -20.29415 -19.94364 -18.56923 -18.06095 -16.73955 -16.24926 -15.96781 -15.73029 -15.17130 -14.43055 -14.37648 -14.19183 -13.63683 -13.52373 -13.34978 -12.84745 -12.60978 -12.40967 -12.33685 -11.95342 -11.94242 -11.66025 -11.56285 -11.16101 -10.97667 -10.50979 -10.46748 -10.38445 -9.87852 -9.58792 -9.25253 -9.16895 -9.10663 -8.94646 -8.70194 -8.28965 -5.93540 -3.95850 0.56139 1.24670 1.56811 2.08762 2.75393 3.34344 3.36370 3.41521 3.45574 4.41920 4.45973 4.50574 4.81096 4.95776 4.98588 5.11275 5.16560 5.30004 5.35673 5.40554 5.42429 5.48827 5.57676 5.73831 5.90004 6.05343 6.10609 6.17290 6.29988 6.34366 6.58101 6.87258 7.05306 7.22908 7.46087 7.76676 7.92684 8.08264 8.28445 8.50144 9.12184 9.67719 11.17834 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.042805 B = 0.002242 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.970391 B =12485.805887 C =12568.991576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.089 4.089 3 C -0.220 4.220 4 S 0.099 5.901 5 C -0.190 4.190 6 C -0.119 4.119 7 C 0.180 3.820 8 N -0.734 5.734 9 C 0.512 3.488 10 O -0.535 6.535 11 C -0.138 4.138 12 C -0.103 4.103 13 C -0.110 4.110 14 C 0.019 3.981 15 C -0.519 4.519 16 H 0.055 0.945 17 C 0.054 3.946 18 N -0.895 5.895 19 Si 0.891 3.109 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 H 0.072 0.928 24 H 0.067 0.933 25 H 0.072 0.928 26 H 0.165 0.835 27 H 0.167 0.833 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.401 0.599 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.016 0.984 38 H 0.016 0.984 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.773 25.126 11.033 30.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.101 4.101 3 C -0.355 4.355 4 S 0.365 5.635 5 C -0.326 4.326 6 C -0.132 4.132 7 C 0.055 3.945 8 N -0.388 5.388 9 C 0.299 3.701 10 O -0.411 6.411 11 C -0.178 4.178 12 C -0.141 4.141 13 C -0.148 4.148 14 C -0.018 4.018 15 C -0.557 4.557 16 H 0.073 0.927 17 C -0.146 4.146 18 N -0.535 5.535 19 Si 0.719 3.281 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.211 1.211 23 H 0.090 0.910 24 H 0.086 0.914 25 H 0.091 0.909 26 H 0.182 0.818 27 H 0.185 0.815 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.235 0.765 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 13.945 25.261 11.739 31.151 hybrid contribution -1.391 -0.717 -1.218 1.983 sum 12.554 24.544 10.521 29.508 Atomic orbital electron populations 1.20595 0.89427 1.03231 1.02697 1.18845 0.97658 0.91351 1.02252 1.25439 0.95745 1.02392 1.11894 1.84335 1.06396 1.00121 1.72639 1.25617 0.99138 0.99484 1.08377 1.18868 0.92728 0.95766 1.05878 1.19820 0.99023 0.90689 0.85009 1.46159 1.62620 1.19825 1.10174 1.21123 0.76511 0.80425 0.91997 1.90713 1.54657 1.49285 1.46440 1.21793 1.02301 1.01120 0.92602 1.21452 1.00452 0.92948 0.99273 1.21648 0.99445 1.00380 0.93310 1.19103 0.95653 0.90234 0.96812 1.21324 1.38148 1.01773 0.94471 0.92713 1.25049 0.96140 0.96592 0.96866 1.69984 1.43527 1.08929 1.31036 0.86558 0.78293 0.78320 0.84943 1.19791 1.21064 1.21067 0.90975 0.91371 0.90863 0.81796 0.81509 0.90793 0.90475 0.76545 0.89153 0.89169 0.91819 0.91798 0.93489 0.93501 0.96586 0.96585 0.93114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.68 9.61 36.01 0.35 -0.33 16 2 C -0.09 -0.68 5.80 -106.25 -0.62 -1.30 16 3 C -0.22 -1.51 10.98 29.04 0.32 -1.19 16 4 S 0.10 0.67 23.34 -107.50 -2.51 -1.84 16 5 C -0.19 -1.41 10.95 29.04 0.32 -1.09 16 6 C -0.12 -0.97 5.17 -106.24 -0.55 -1.52 16 7 C 0.18 1.73 5.11 -5.19 -0.03 1.70 16 8 N -0.73 -7.36 5.26 -61.47 -0.32 -7.69 16 9 C 0.51 7.04 7.83 -10.99 -0.09 6.95 16 10 O -0.54 -9.68 15.98 5.56 0.09 -9.59 16 11 C -0.14 -1.83 5.70 -27.88 -0.16 -1.99 16 12 C -0.10 -1.86 4.50 -26.73 -0.12 -1.98 16 13 C -0.11 -2.29 5.15 -26.73 -0.14 -2.42 16 14 C 0.02 0.51 4.97 -27.89 -0.14 0.37 16 15 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 16 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 17 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 18 N -0.90 -27.68 13.29 55.43 0.74 -26.94 16 19 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 21 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 23 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 25 H 0.07 0.55 7.11 -51.93 -0.37 0.18 16 26 H 0.16 0.82 8.06 -52.48 -0.42 0.40 16 27 H 0.17 1.02 8.06 -52.49 -0.42 0.60 16 28 H 0.07 0.75 8.07 -51.93 -0.42 0.33 16 29 H 0.08 0.79 7.71 -51.93 -0.40 0.39 16 30 H 0.40 3.14 8.46 -40.82 -0.35 2.80 16 31 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 34 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 343.91 15.07 5.18 5.18 Total: -1.00 -33.65 343.91 -9.25 -42.90 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -6.14 Total: -2.35 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: -1.26 Total: -16.66 kcal Atomic # 7 Polarization: -35.04 SS G_CDS: 0.41 Total: -34.63 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.09 Total: -9.59 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 16 Polarization: 0.67 SS G_CDS: -2.51 Total: -1.84 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.65 -9.25 -42.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588165400.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.023 kcal (2) G-P(sol) polarization free energy of solvation -33.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds