Wall clock time and date at job start Tue Mar 31 2020 05:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33387 * 122.54502 * 2 1 4 4 S 1.75881 * 109.59726 * 180.24346 * 3 2 1 5 5 C 1.75883 * 90.96912 * 359.73260 * 4 3 2 6 6 C 1.33386 * 109.59422 * 359.97438 * 5 4 3 7 7 C 1.50706 * 122.54021 * 180.02562 * 6 5 4 8 8 N 1.46500 * 109.46949 * 260.02338 * 7 6 5 9 9 C 1.34769 * 120.00237 * 180.02562 * 8 7 6 10 10 O 1.21282 * 119.99855 * 359.97438 * 9 8 7 11 11 C 1.50702 * 120.00461 * 180.02562 * 9 8 7 12 12 C 1.52996 * 109.47592 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47343 * 180.02562 * 12 11 9 14 14 C 1.52996 * 109.46969 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.46861 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00370 * 359.97438 * 15 14 13 17 17 C 1.37882 * 119.99790 * 180.02562 * 15 14 13 18 18 N 1.31508 * 120.00257 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99622 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47485 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47293 * 119.99809 * 19 17 15 22 22 H 1.48505 * 109.46854 * 239.99748 * 19 17 15 23 23 H 1.08996 * 109.46506 * 270.25320 * 1 2 3 24 24 H 1.08993 * 109.46761 * 30.25120 * 1 2 3 25 25 H 1.08999 * 109.47279 * 150.25533 * 1 2 3 26 26 H 1.08005 * 125.20274 * 359.97272 * 3 2 1 27 27 H 1.07998 * 125.20609 * 179.97438 * 5 4 3 28 28 H 1.09000 * 109.47318 * 20.01724 * 7 6 5 29 29 H 1.09000 * 109.47161 * 140.02354 * 7 6 5 30 30 H 0.97010 * 119.99909 * 359.97438 * 8 7 6 31 31 H 1.08996 * 109.47077 * 300.00146 * 11 9 8 32 32 H 1.09004 * 109.46818 * 59.99313 * 11 9 8 33 33 H 1.09004 * 109.47108 * 300.00035 * 12 11 9 34 34 H 1.09000 * 109.46870 * 59.99930 * 12 11 9 35 35 H 1.09000 * 109.46497 * 299.99836 * 13 12 11 36 36 H 1.08996 * 109.46876 * 60.00226 * 13 12 11 37 37 H 1.08996 * 109.47452 * 300.00062 * 14 13 12 38 38 H 1.09000 * 109.47054 * 59.99902 * 14 13 12 39 39 H 0.97002 * 120.00075 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2246 1.1244 0.0000 4 16 3.9387 0.7303 -0.0070 5 6 3.5737 -0.9902 -0.0015 6 6 2.2516 -1.1670 0.0056 7 6 1.6165 -2.5337 0.0124 8 7 1.1869 -2.8792 -1.3449 9 6 0.5882 -4.0632 -1.5814 10 8 0.4054 -4.8429 -0.6706 11 6 0.1468 -4.4189 -2.9777 12 6 -0.4981 -5.8063 -2.9710 13 6 -0.9456 -6.1677 -4.3887 14 6 -1.5899 -7.5554 -4.3820 15 6 -2.0313 -7.9110 -5.7783 16 1 -1.8689 -7.2166 -6.5893 17 6 -2.6434 -9.1226 -6.0203 18 7 -2.8415 -9.9681 -5.0326 19 14 -3.1898 -9.5637 -7.7512 20 1 -2.8540 -8.4507 -8.6751 21 1 -2.4932 -10.7995 -8.1905 22 1 -4.6572 -9.7914 -7.7641 23 1 -0.3632 0.0045 1.0277 24 1 -0.3632 0.8877 -0.5177 25 1 -0.3634 -0.8922 -0.5098 26 1 1.8156 2.1240 -0.0004 27 1 4.3077 -1.7824 -0.0035 28 1 2.3408 -3.2692 0.3624 29 1 0.7525 -2.5296 0.6769 30 1 1.3328 -2.2554 -2.0734 31 1 -0.5769 -3.6832 -3.3285 32 1 1.0111 -4.4235 -3.6419 33 1 0.2260 -6.5419 -2.6204 34 1 -1.3623 -5.8020 -2.3067 35 1 -1.6696 -5.4322 -4.7396 36 1 -0.0811 -6.1721 -5.0525 37 1 -0.8657 -8.2905 -4.0311 38 1 -2.4543 -7.5514 -3.7180 39 1 -3.2718 -10.8206 -5.2029 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588165400.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:16 Heat of formation + Delta-G solvation = -57.541530 kcal Electronic energy + Delta-G solvation = -18538.291307 eV Core-core repulsion = 15570.474597 eV Total energy + Delta-G solvation = -2967.816710 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.95081 -39.56035 -36.65437 -35.45581 -34.59293 -32.25116 -31.48080 -29.44939 -27.63295 -26.40214 -24.07783 -23.12833 -21.78317 -21.28426 -19.24253 -18.60488 -18.41199 -17.74522 -17.00383 -16.85289 -16.47417 -15.94302 -15.54064 -14.91117 -14.67419 -14.51882 -14.42403 -13.96100 -13.74389 -13.56560 -13.41574 -13.25499 -12.94417 -12.86123 -12.77585 -12.51437 -12.30240 -12.13170 -12.11566 -11.71065 -11.36049 -11.34743 -11.15000 -10.82235 -10.54909 -10.11947 -9.70297 -9.25292 -8.17998 -6.29988 0.00687 0.71317 1.02832 1.40987 1.41957 1.46957 1.55467 1.67379 2.41575 2.47447 3.14725 3.77652 3.89581 3.93230 4.09532 4.17014 4.23691 4.40691 4.54309 4.58767 4.68451 4.71019 4.76018 4.80075 4.87041 4.90692 5.05395 5.14232 5.21670 5.35011 5.35792 5.44118 5.50681 5.54824 5.59078 5.79828 5.89494 6.26505 6.56392 6.88811 7.28007 7.39573 8.94473 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.042805 B = 0.002242 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.970391 B =12485.805887 C =12568.991576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.102 4.102 3 C -0.221 4.221 4 S 0.118 5.882 5 C -0.196 4.196 6 C -0.127 4.127 7 C 0.183 3.817 8 N -0.713 5.713 9 C 0.513 3.487 10 O -0.587 6.587 11 C -0.128 4.128 12 C -0.096 4.096 13 C -0.096 4.096 14 C 0.018 3.982 15 C -0.540 4.540 16 H 0.066 0.934 17 C -0.008 4.008 18 N -0.938 5.938 19 Si 0.970 3.030 20 H -0.257 1.257 21 H -0.279 1.279 22 H -0.279 1.279 23 H 0.072 0.928 24 H 0.081 0.919 25 H 0.062 0.938 26 H 0.183 0.817 27 H 0.177 0.823 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.415 0.585 31 H 0.119 0.881 32 H 0.117 0.883 33 H 0.042 0.958 34 H 0.043 0.957 35 H 0.061 0.939 36 H 0.060 0.940 37 H -0.016 1.016 38 H -0.015 1.015 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.483 27.515 9.338 32.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.114 4.114 3 C -0.356 4.356 4 S 0.384 5.616 5 C -0.333 4.333 6 C -0.141 4.141 7 C 0.058 3.942 8 N -0.366 5.366 9 C 0.301 3.699 10 O -0.467 6.467 11 C -0.167 4.167 12 C -0.134 4.134 13 C -0.133 4.133 14 C -0.019 4.019 15 C -0.578 4.578 16 H 0.084 0.916 17 C -0.205 4.205 18 N -0.579 5.579 19 Si 0.794 3.206 20 H -0.181 1.181 21 H -0.205 1.205 22 H -0.205 1.205 23 H 0.091 0.909 24 H 0.099 0.901 25 H 0.081 0.919 26 H 0.200 0.800 27 H 0.194 0.806 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.252 0.748 31 H 0.137 0.863 32 H 0.135 0.865 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.003 0.997 38 H 0.003 0.997 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 14.680 27.714 10.027 32.926 hybrid contribution -1.565 -1.420 -0.623 2.203 sum 13.116 26.294 9.404 30.852 Atomic orbital electron populations 1.20586 0.89024 1.03338 1.02813 1.18941 0.98099 0.91398 1.02955 1.25714 0.95842 1.03059 1.10968 1.84306 1.06199 0.99124 1.71932 1.25823 0.99154 1.00532 1.07742 1.18750 0.93070 0.95027 1.07221 1.19761 0.98564 0.91595 0.84324 1.45958 1.60839 1.18738 1.11034 1.21174 0.76293 0.80819 0.91597 1.90703 1.57048 1.51117 1.47857 1.21669 1.03692 0.98423 0.92963 1.21247 0.99524 0.95744 0.96909 1.21446 0.99749 0.96797 0.95317 1.19068 0.94098 0.93321 0.95460 1.21784 1.38201 1.02314 0.95467 0.91588 1.26103 0.96106 0.96509 1.01802 1.70138 1.44397 1.09522 1.33815 0.85327 0.77810 0.78399 0.79060 1.18090 1.20491 1.20474 0.90933 0.90057 0.91898 0.79986 0.80577 0.91516 0.91410 0.74836 0.86333 0.86470 0.93887 0.93790 0.92050 0.92126 0.99721 0.99684 0.92866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.19 9.61 71.24 0.68 -0.50 16 2 C -0.10 -1.39 5.80 -20.92 -0.12 -1.51 16 3 C -0.22 -2.54 10.98 66.72 0.73 -1.80 16 4 S 0.12 1.34 23.34 -56.49 -1.32 0.02 16 5 C -0.20 -2.60 10.95 66.72 0.73 -1.87 16 6 C -0.13 -1.92 5.17 -20.92 -0.11 -2.03 16 7 C 0.18 3.42 5.11 85.63 0.44 3.86 16 8 N -0.71 -13.33 5.26 -466.78 -2.46 -15.79 16 9 C 0.51 13.72 7.83 87.66 0.69 14.41 16 10 O -0.59 -21.75 15.98 -3.04 -0.05 -21.80 16 11 C -0.13 -3.13 5.70 29.85 0.17 -2.96 16 12 C -0.10 -3.48 4.50 30.59 0.14 -3.34 16 13 C -0.10 -3.92 5.15 30.59 0.16 -3.76 16 14 C 0.02 0.98 4.97 29.85 0.15 1.13 16 15 C -0.54 -31.46 9.11 25.60 0.23 -31.23 16 16 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 17 C -0.01 -0.48 5.46 84.66 0.46 -0.02 16 18 N -0.94 -59.36 13.29 21.45 0.28 -59.08 16 19 Si 0.97 45.01 29.54 68.60 2.03 47.04 16 20 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 21 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 22 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 23 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 24 H 0.08 0.74 8.12 -2.39 -0.02 0.72 16 25 H 0.06 0.88 7.11 -2.39 -0.02 0.86 16 26 H 0.18 1.33 8.06 -2.91 -0.02 1.30 16 27 H 0.18 1.89 8.06 -2.91 -0.02 1.87 16 28 H 0.07 1.36 8.07 -2.39 -0.02 1.34 16 29 H 0.07 1.41 7.71 -2.39 -0.02 1.39 16 30 H 0.41 5.50 8.46 -92.70 -0.78 4.71 16 31 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.04 1.71 8.10 -2.38 -0.02 1.69 16 34 H 0.04 1.74 8.10 -2.39 -0.02 1.72 16 35 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 37 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 38 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 39 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -74.62 343.91 3.09 -71.54 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: 0.25 Total: 7.71 kcal Atomic # 6 Polarization: -33.99 SS G_CDS: 4.35 Total: -29.64 kcal Atomic # 7 Polarization: -72.69 SS G_CDS: -2.17 Total: -74.87 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.05 Total: -21.80 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Atomic # 16 Polarization: 1.34 SS G_CDS: -1.32 Total: 0.02 kcal Total: -74.62 3.09 -71.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588165400.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.997 kcal (2) G-P(sol) polarization free energy of solvation -74.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds