Wall clock time and date at job start Tue Mar 31 2020 05:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99941 * 2 1 4 4 H 1.48507 * 109.46891 * 269.99392 * 3 2 1 5 5 H 1.48493 * 109.47468 * 29.99735 * 3 2 1 6 6 H 1.48503 * 109.46799 * 149.99940 * 3 2 1 7 7 C 1.37878 * 119.99811 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00001 * 0.02562 * 7 2 1 9 9 C 1.50695 * 119.99967 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.47303 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47242 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47219 * 179.97438 * 11 10 9 13 13 C 1.50704 * 109.47468 * 180.02562 * 12 11 10 14 14 O 1.21293 * 119.99817 * 0.02562 * 13 12 11 15 15 N 1.34776 * 120.00349 * 180.02562 * 13 12 11 16 16 C 1.40117 * 120.00206 * 185.53391 * 15 13 12 17 17 C 1.38723 * 120.07341 * 24.80601 * 16 15 13 18 18 C 1.38383 * 119.95848 * 179.97438 * 17 16 15 19 19 F 1.35095 * 119.94384 * 180.02562 * 18 17 16 20 20 C 1.38473 * 120.11103 * 0.02562 * 18 17 16 21 21 C 1.38248 * 120.15480 * 359.68031 * 20 18 17 22 22 C 1.38528 * 120.03693 * 0.59920 * 21 20 18 23 23 O 1.36026 * 120.05568 * 179.70044 * 22 21 20 24 24 H 0.97003 * 119.99586 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47313 * 60.00137 * 9 7 2 26 26 H 1.09009 * 109.47045 * 300.00402 * 9 7 2 27 27 H 1.08995 * 109.47270 * 59.99566 * 10 9 7 28 28 H 1.09003 * 109.46694 * 299.99545 * 10 9 7 29 29 H 1.09003 * 109.47176 * 59.99861 * 11 10 9 30 30 H 1.09000 * 109.47648 * 299.99898 * 11 10 9 31 31 H 1.09003 * 109.46837 * 60.00049 * 12 11 10 32 32 H 1.09000 * 109.47470 * 300.00324 * 12 11 10 33 33 H 0.96999 * 119.99448 * 5.52799 * 15 13 12 34 34 H 1.07996 * 120.02249 * 359.96190 * 17 16 15 35 35 H 1.08005 * 119.92446 * 179.97438 * 20 18 17 36 36 H 1.08003 * 119.98319 * 180.30035 * 21 20 18 37 37 H 0.96694 * 113.99510 * 269.72306 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5515 -2.6366 0.0022 12 6 6.0615 -4.0791 0.0028 13 6 7.5685 -4.0792 0.0046 14 8 8.1750 -3.0288 0.0059 15 7 8.2424 -5.2464 0.0048 16 6 9.6385 -5.2494 0.1236 17 6 10.2863 -4.1869 0.7368 18 6 11.6652 -4.1925 0.8533 19 9 12.2956 -3.1580 1.4510 20 6 12.3998 -5.2568 0.3581 21 6 11.7586 -6.3208 -0.2484 22 6 10.3790 -6.3190 -0.3736 23 8 9.7482 -7.3629 -0.9758 24 1 -0.4850 0.8401 -0.0004 25 1 3.8745 -0.6802 0.8911 26 1 3.8752 -0.6804 -0.8889 27 1 3.6585 -3.1503 -0.8892 28 1 3.6579 -3.1506 0.8908 29 1 5.9141 -2.1231 0.8927 30 1 5.9156 -2.1225 -0.8872 31 1 5.6988 -4.5930 -0.8875 32 1 5.6974 -4.5930 0.8924 33 1 7.7608 -6.0844 -0.0771 34 1 9.7148 -3.3559 1.1230 35 1 13.4759 -5.2579 0.4503 36 1 12.3340 -7.1517 -0.6293 37 1 9.6334 -7.2555 -1.9299 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588632333.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:07 Heat of formation + Delta-G solvation = -115.256544 kcal Electronic energy + Delta-G solvation = -20708.955266 eV Core-core repulsion = 17172.422669 eV Total energy + Delta-G solvation = -3536.532597 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.14340 -41.07082 -39.28573 -36.85597 -35.32355 -34.91529 -32.67090 -31.00435 -30.06537 -29.12727 -26.11333 -23.90413 -22.92462 -21.92883 -20.47883 -20.09353 -19.05522 -18.37873 -17.47864 -16.68014 -16.49200 -16.24727 -15.91837 -15.82968 -15.63426 -14.55084 -14.38861 -14.14967 -14.09928 -13.85822 -13.22286 -12.80457 -12.69271 -12.35706 -12.22423 -12.20062 -11.79803 -11.36083 -11.18154 -10.84453 -10.80713 -10.60077 -10.05931 -9.86837 -9.69165 -9.50440 -9.15238 -9.07328 -8.51493 -8.45446 -6.02656 -4.00429 0.60091 0.76795 2.32061 2.62930 3.09469 3.33645 3.40979 3.46435 3.69174 3.93096 4.31828 4.48060 4.55117 4.63748 4.90567 5.05314 5.08670 5.14741 5.32065 5.45595 5.52056 5.64219 5.74166 5.83674 5.93214 5.99431 6.05090 6.32621 6.43110 6.60518 6.74150 6.93369 7.02430 7.12459 7.33895 7.46750 7.81134 7.83413 8.55674 9.02116 9.60563 11.10801 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.029557 B = 0.002829 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.101656 B = 9896.390403 C =10720.690277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.520 4.520 8 H 0.071 0.929 9 C -0.015 4.015 10 C -0.103 4.103 11 C -0.108 4.108 12 C -0.137 4.137 13 C 0.512 3.488 14 O -0.511 6.511 15 N -0.671 5.671 16 C 0.164 3.836 17 C -0.160 4.160 18 C 0.116 3.884 19 F -0.134 7.134 20 C -0.163 4.163 21 C -0.093 4.093 22 C 0.057 3.943 23 O -0.491 6.491 24 H 0.262 0.738 25 H 0.016 0.984 26 H 0.011 0.989 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.419 0.581 34 H 0.164 0.836 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.563 -16.041 -1.405 29.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.558 4.558 8 H 0.089 0.911 9 C -0.053 4.053 10 C -0.140 4.140 11 C -0.146 4.146 12 C -0.177 4.177 13 C 0.301 3.699 14 O -0.385 6.385 15 N -0.316 5.316 16 C 0.067 3.933 17 C -0.181 4.181 18 C 0.096 3.904 19 F -0.113 7.113 20 C -0.183 4.183 21 C -0.112 4.112 22 C 0.010 3.990 23 O -0.301 6.301 24 H 0.072 0.928 25 H 0.034 0.966 26 H 0.029 0.971 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.256 0.744 34 H 0.181 0.819 35 H 0.158 0.842 36 H 0.160 0.840 37 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 24.734 -15.327 -0.801 29.109 hybrid contribution 0.218 0.778 -0.474 0.936 sum 24.952 -14.549 -1.275 28.912 Atomic orbital electron populations 1.69925 1.06312 1.26855 1.51377 1.25047 0.94739 0.99239 0.94583 0.86772 0.80421 0.83546 0.78538 1.20313 1.21435 1.18911 1.21173 0.89630 0.94397 1.50634 0.91096 1.19574 0.96963 0.92391 0.96344 1.21476 0.91403 1.00078 1.01063 1.21523 0.97530 0.92422 1.03102 1.21828 0.88681 1.02346 1.04835 1.21461 0.91439 0.82589 0.74391 1.90690 1.70103 1.31257 1.46459 1.43731 1.04391 1.10934 1.72588 1.17861 0.83917 0.94234 0.97281 1.21332 0.93165 1.01418 1.02160 1.17495 0.90242 0.85793 0.96853 1.91522 1.82159 1.56549 1.81037 1.20995 1.00955 0.93667 1.02701 1.21026 0.92742 0.98230 0.99203 1.18073 0.90135 0.89038 1.01800 1.84868 1.79113 1.39880 1.26249 0.92789 0.96593 0.97051 0.92755 0.92724 0.91607 0.91615 0.88417 0.88279 0.74384 0.81895 0.84226 0.83987 0.75456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.21 13.96 55.43 0.77 -27.44 16 2 C 0.06 1.91 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 22.18 27.47 -169.99 -4.67 17.51 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 7 C -0.52 -14.95 9.66 -34.44 -0.33 -15.29 16 8 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 9 C -0.02 -0.37 4.04 -27.89 -0.11 -0.48 16 10 C -0.10 -1.93 5.15 -26.73 -0.14 -2.07 16 11 C -0.11 -1.69 4.50 -26.73 -0.12 -1.81 16 12 C -0.14 -1.53 5.70 -27.88 -0.16 -1.69 16 13 C 0.51 6.17 7.64 -10.98 -0.08 6.08 16 14 O -0.51 -8.06 13.15 5.55 0.07 -7.98 16 15 N -0.67 -6.27 5.29 -9.75 -0.05 -6.32 16 16 C 0.16 1.69 6.45 -83.51 -0.54 1.15 16 17 C -0.16 -1.90 8.70 -39.35 -0.34 -2.25 16 18 C 0.12 1.26 7.29 -39.44 -0.29 0.97 16 19 F -0.13 -1.59 17.26 2.25 0.04 -1.55 16 20 C -0.16 -1.33 10.02 -39.49 -0.40 -1.73 16 21 C -0.09 -0.67 9.98 -39.47 -0.39 -1.07 16 22 C 0.06 0.47 6.72 -39.09 -0.26 0.21 16 23 O -0.49 -3.16 12.92 -19.82 -0.26 -3.42 16 24 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 25 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 26 H 0.01 0.27 7.57 -51.92 -0.39 -0.12 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.07 1.09 8.10 -51.93 -0.42 0.67 16 30 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 31 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.42 2.76 8.34 -40.82 -0.34 2.42 16 34 H 0.16 2.27 5.79 -52.49 -0.30 1.96 16 35 H 0.14 0.83 8.06 -52.48 -0.42 0.40 16 36 H 0.14 0.68 8.06 -52.48 -0.42 0.25 16 37 H 0.39 0.96 9.06 45.56 0.41 1.38 16 LS Contribution 321.27 15.07 4.84 4.84 Total: -1.00 -34.54 321.27 -6.48 -41.01 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -3.96 Total: -0.50 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: -3.26 Total: -16.15 kcal Atomic # 7 Polarization: -34.48 SS G_CDS: 0.72 Total: -33.76 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: -0.18 Total: -11.40 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.67 Total: 17.51 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -34.54 -6.48 -41.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588632333.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.244 kcal (2) G-P(sol) polarization free energy of solvation -34.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds