Wall clock time and date at job start Tue Mar 31 2020 05:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99941 * 2 1 4 4 H 1.48507 * 109.46891 * 269.99392 * 3 2 1 5 5 H 1.48493 * 109.47468 * 29.99735 * 3 2 1 6 6 H 1.48503 * 109.46799 * 149.99940 * 3 2 1 7 7 C 1.37878 * 119.99811 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00001 * 0.02562 * 7 2 1 9 9 C 1.50695 * 119.99967 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.47303 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47242 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47219 * 179.97438 * 11 10 9 13 13 C 1.50704 * 109.47468 * 180.02562 * 12 11 10 14 14 O 1.21293 * 119.99817 * 0.02562 * 13 12 11 15 15 N 1.34776 * 120.00349 * 180.02562 * 13 12 11 16 16 C 1.40117 * 120.00206 * 185.53391 * 15 13 12 17 17 C 1.38723 * 120.07341 * 24.80601 * 16 15 13 18 18 C 1.38383 * 119.95848 * 179.97438 * 17 16 15 19 19 F 1.35095 * 119.94384 * 180.02562 * 18 17 16 20 20 C 1.38473 * 120.11103 * 0.02562 * 18 17 16 21 21 C 1.38248 * 120.15480 * 359.68031 * 20 18 17 22 22 C 1.38528 * 120.03693 * 0.59920 * 21 20 18 23 23 O 1.36026 * 120.05568 * 179.70044 * 22 21 20 24 24 H 0.97003 * 119.99586 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47313 * 60.00137 * 9 7 2 26 26 H 1.09009 * 109.47045 * 300.00402 * 9 7 2 27 27 H 1.08995 * 109.47270 * 59.99566 * 10 9 7 28 28 H 1.09003 * 109.46694 * 299.99545 * 10 9 7 29 29 H 1.09003 * 109.47176 * 59.99861 * 11 10 9 30 30 H 1.09000 * 109.47648 * 299.99898 * 11 10 9 31 31 H 1.09003 * 109.46837 * 60.00049 * 12 11 10 32 32 H 1.09000 * 109.47470 * 300.00324 * 12 11 10 33 33 H 0.96999 * 119.99448 * 5.52799 * 15 13 12 34 34 H 1.07996 * 120.02249 * 359.96190 * 17 16 15 35 35 H 1.08005 * 119.92446 * 179.97438 * 20 18 17 36 36 H 1.08003 * 119.98319 * 180.30035 * 21 20 18 37 37 H 0.96694 * 113.99510 * 269.72306 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5515 -2.6366 0.0022 12 6 6.0615 -4.0791 0.0028 13 6 7.5685 -4.0792 0.0046 14 8 8.1750 -3.0288 0.0059 15 7 8.2424 -5.2464 0.0048 16 6 9.6385 -5.2494 0.1236 17 6 10.2863 -4.1869 0.7368 18 6 11.6652 -4.1925 0.8533 19 9 12.2956 -3.1580 1.4510 20 6 12.3998 -5.2568 0.3581 21 6 11.7586 -6.3208 -0.2484 22 6 10.3790 -6.3190 -0.3736 23 8 9.7482 -7.3629 -0.9758 24 1 -0.4850 0.8401 -0.0004 25 1 3.8745 -0.6802 0.8911 26 1 3.8752 -0.6804 -0.8889 27 1 3.6585 -3.1503 -0.8892 28 1 3.6579 -3.1506 0.8908 29 1 5.9141 -2.1231 0.8927 30 1 5.9156 -2.1225 -0.8872 31 1 5.6988 -4.5930 -0.8875 32 1 5.6974 -4.5930 0.8924 33 1 7.7608 -6.0844 -0.0771 34 1 9.7148 -3.3559 1.1230 35 1 13.4759 -5.2579 0.4503 36 1 12.3340 -7.1517 -0.6293 37 1 9.6334 -7.2555 -1.9299 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588632333.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:06 Heat of formation + Delta-G solvation = -139.999851 kcal Electronic energy + Delta-G solvation = -20710.028216 eV Core-core repulsion = 17172.422669 eV Total energy + Delta-G solvation = -3537.605547 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.97075 -41.86794 -40.06331 -37.46133 -36.74020 -35.85894 -34.63545 -32.26730 -31.12222 -29.97453 -27.65757 -24.89892 -23.85435 -23.12332 -21.75476 -21.39126 -19.70132 -19.11326 -18.84982 -18.29258 -17.34340 -17.06326 -16.81180 -16.69664 -16.34135 -16.29734 -15.71140 -15.33369 -14.86647 -14.78149 -14.59563 -14.03929 -13.86342 -13.71743 -13.54912 -13.23993 -12.96691 -12.84294 -12.36411 -12.10017 -11.96932 -11.76714 -11.62746 -11.50308 -11.34482 -11.26556 -10.79238 -10.76406 -9.81060 -9.16462 -8.30266 -6.33221 -0.09183 0.06061 1.34101 1.35926 1.45842 1.48341 1.85043 2.35209 2.41840 3.05322 3.10428 3.19809 3.59899 3.78933 3.94904 4.02209 4.12758 4.21993 4.36596 4.58911 4.62675 4.74517 4.81300 4.84824 4.92772 5.07754 5.11986 5.13284 5.18830 5.24073 5.30764 5.60024 5.65299 5.68388 5.73466 6.27905 6.29859 6.72938 6.75130 7.00223 7.31734 8.86330 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.029557 B = 0.002829 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.101656 B = 9896.390403 C =10720.690277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.003 3.997 3 Si 0.947 3.053 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.253 1.253 7 C -0.530 4.530 8 H 0.038 0.962 9 C -0.018 4.018 10 C -0.094 4.094 11 C -0.099 4.099 12 C -0.128 4.128 13 C 0.513 3.487 14 O -0.556 6.556 15 N -0.655 5.655 16 C 0.143 3.857 17 C -0.181 4.181 18 C 0.091 3.909 19 F -0.148 7.148 20 C -0.151 4.151 21 C -0.086 4.086 22 C 0.073 3.927 23 O -0.492 6.492 24 H 0.266 0.734 25 H 0.013 0.987 26 H 0.013 0.987 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.126 0.874 32 H 0.122 0.878 33 H 0.433 0.567 34 H 0.135 0.865 35 H 0.165 0.835 36 H 0.177 0.823 37 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.779 -17.851 -2.203 32.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.193 4.193 3 Si 0.771 3.229 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.176 1.176 7 C -0.568 4.568 8 H 0.056 0.944 9 C -0.055 4.055 10 C -0.132 4.132 11 C -0.138 4.138 12 C -0.167 4.167 13 C 0.303 3.697 14 O -0.433 6.433 15 N -0.301 5.301 16 C 0.047 3.953 17 C -0.203 4.203 18 C 0.071 3.929 19 F -0.127 7.127 20 C -0.171 4.171 21 C -0.104 4.104 22 C 0.025 3.975 23 O -0.304 6.304 24 H 0.075 0.925 25 H 0.031 0.969 26 H 0.031 0.969 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.144 0.856 32 H 0.140 0.860 33 H 0.274 0.726 34 H 0.152 0.848 35 H 0.183 0.817 36 H 0.194 0.806 37 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 26.958 -17.194 -1.617 32.015 hybrid contribution -0.498 1.199 -0.255 1.323 sum 26.459 -15.995 -1.873 30.975 Atomic orbital electron populations 1.70064 1.08127 1.28068 1.52925 1.25993 0.95603 1.03384 0.94334 0.85701 0.79369 0.78674 0.79175 1.19187 1.20838 1.17636 1.21554 0.92159 0.93206 1.49885 0.94391 1.19580 0.93858 0.95986 0.96081 1.21334 0.93598 0.96691 1.01532 1.21309 0.94958 0.95492 1.02002 1.21721 0.88085 0.99584 1.07328 1.21534 0.91701 0.82640 0.73797 1.90693 1.70908 1.32962 1.48761 1.43481 1.04271 1.10755 1.71586 1.18003 0.84210 0.94797 0.98310 1.21211 0.93803 1.01557 1.03715 1.17763 0.90182 0.86650 0.98329 1.91479 1.82274 1.57402 1.81528 1.21299 1.02121 0.92585 1.01058 1.21411 0.92457 0.98583 0.97984 1.18117 0.90458 0.88223 1.00713 1.84824 1.78852 1.38753 1.28000 0.92528 0.96893 0.96865 0.92155 0.92405 0.92968 0.92636 0.85604 0.86035 0.72646 0.84776 0.81731 0.80610 0.72997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.42 13.96 21.45 0.30 -60.12 16 2 C 0.00 0.21 5.47 84.65 0.46 0.67 16 3 Si 0.95 45.81 27.47 68.60 1.88 47.70 16 4 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 5 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 6 H -0.25 -11.63 6.54 99.48 0.65 -10.97 16 7 C -0.53 -30.96 9.66 25.60 0.25 -30.71 16 8 H 0.04 2.39 7.99 -2.91 -0.02 2.37 16 9 C -0.02 -0.84 4.04 29.85 0.12 -0.72 16 10 C -0.09 -3.46 5.15 30.59 0.16 -3.30 16 11 C -0.10 -3.02 4.50 30.59 0.14 -2.88 16 12 C -0.13 -2.59 5.70 29.85 0.17 -2.42 16 13 C 0.51 11.89 7.64 87.66 0.67 12.56 16 14 O -0.56 -17.90 13.15 -3.07 -0.04 -17.94 16 15 N -0.65 -11.16 5.29 -303.16 -1.60 -12.76 16 16 C 0.14 2.78 6.45 38.18 0.25 3.03 16 17 C -0.18 -4.43 8.70 22.42 0.19 -4.24 16 18 C 0.09 1.95 7.29 22.36 0.16 2.11 16 19 F -0.15 -3.63 17.26 44.97 0.78 -2.85 16 20 C -0.15 -2.12 10.02 22.33 0.22 -1.89 16 21 C -0.09 -0.94 9.98 22.34 0.22 -0.72 16 22 C 0.07 0.99 6.72 22.59 0.15 1.14 16 23 O -0.49 -4.42 12.92 -93.84 -1.21 -5.64 16 24 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 25 H 0.01 0.62 7.20 -2.39 -0.02 0.60 16 26 H 0.01 0.62 7.57 -2.38 -0.02 0.60 16 27 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.05 1.72 8.10 -2.39 -0.02 1.70 16 30 H 0.05 1.79 8.10 -2.39 -0.02 1.77 16 31 H 0.13 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.43 4.52 8.34 -92.71 -0.77 3.74 16 34 H 0.13 4.04 5.79 -2.91 -0.02 4.02 16 35 H 0.17 1.42 8.06 -2.91 -0.02 1.40 16 36 H 0.18 0.77 8.06 -2.91 -0.02 0.74 16 37 H 0.41 0.33 9.06 -74.06 -0.67 -0.35 16 Total: -1.00 -77.58 321.27 2.88 -74.70 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -0.39 Total: 4.28 kcal Atomic # 6 Polarization: -30.54 SS G_CDS: 3.17 Total: -27.37 kcal Atomic # 7 Polarization: -71.58 SS G_CDS: -1.30 Total: -72.88 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -1.25 Total: -23.58 kcal Atomic # 9 Polarization: -3.63 SS G_CDS: 0.78 Total: -2.85 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 1.88 Total: 47.70 kcal Total: -77.58 2.88 -74.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588632333.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.302 kcal (2) G-P(sol) polarization free energy of solvation -77.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds