Wall clock time and date at job start Tue Mar 31 2020 05:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99908 * 2 1 4 4 H 1.48505 * 109.46865 * 239.99996 * 3 2 1 5 5 H 1.48499 * 109.47280 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47358 * 120.00336 * 3 2 1 7 7 C 1.37883 * 120.00252 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00040 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99747 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47014 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47100 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47118 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47358 * 179.97438 * 12 11 10 14 14 O 1.21305 * 119.99510 * 0.02562 * 13 12 11 15 15 N 1.34773 * 120.00146 * 179.97438 * 13 12 11 16 16 C 1.40228 * 119.99687 * 185.53316 * 15 13 12 17 17 C 1.38704 * 120.06765 * 24.81032 * 16 15 13 18 18 C 1.38195 * 120.00944 * 179.97438 * 17 16 15 19 19 C 1.38485 * 120.13845 * 0.02562 * 18 17 16 20 20 F 1.35095 * 119.93390 * 180.02562 * 19 18 17 21 21 C 1.38430 * 120.12684 * 359.97438 * 19 18 17 22 22 C 1.38543 * 119.99258 * 359.97438 * 21 19 18 23 23 O 1.35967 * 120.06868 * 180.30029 * 22 21 19 24 24 H 0.96996 * 119.99906 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.47012 * 60.00352 * 9 7 2 26 26 H 1.08999 * 109.47134 * 300.00379 * 9 7 2 27 27 H 1.09005 * 109.46781 * 60.00409 * 10 9 7 28 28 H 1.08999 * 109.47641 * 300.00267 * 10 9 7 29 29 H 1.08997 * 109.47224 * 60.00233 * 11 10 9 30 30 H 1.09007 * 109.46915 * 300.00261 * 11 10 9 31 31 H 1.09005 * 109.47095 * 60.00127 * 12 11 10 32 32 H 1.08999 * 109.47309 * 299.99996 * 12 11 10 33 33 H 0.96993 * 120.00283 * 5.53038 * 15 13 12 34 34 H 1.07997 * 119.99159 * 359.97076 * 17 16 15 35 35 H 1.08002 * 119.93285 * 180.02562 * 18 17 16 36 36 H 1.07997 * 120.00212 * 180.02562 * 21 19 18 37 37 H 0.96705 * 113.99427 * 269.71673 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4804 -4.9871 -0.0025 12 6 2.4746 -6.1500 -0.0031 13 6 1.7212 -7.4552 -0.0031 14 8 0.5081 -7.4551 -0.0031 15 7 2.3951 -8.6223 -0.0042 16 6 1.6987 -9.8338 -0.1213 17 6 0.4538 -9.8636 -0.7322 18 6 -0.2312 -11.0583 -0.8475 19 6 0.3224 -12.2276 -0.3534 20 9 -0.3506 -13.3933 -0.4688 21 6 1.5645 -12.2045 0.2574 22 6 2.2563 -11.0099 0.3748 23 8 3.4790 -10.9864 0.9690 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6248 -2.5571 0.8896 27 1 2.8727 -3.6047 0.8878 28 1 2.8714 -3.6039 -0.8922 29 1 0.8534 -5.0442 -0.8922 30 1 0.8540 -5.0455 0.8878 31 1 3.1013 -6.0927 0.8869 32 1 3.1012 -6.0918 -0.8931 33 1 3.3617 -8.6243 0.0760 34 1 0.0198 -8.9530 -1.1179 35 1 -1.2002 -11.0801 -1.3238 36 1 1.9944 -13.1176 0.6415 37 1 3.4498 -10.8303 1.9229 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588649264.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:18 Heat of formation + Delta-G solvation = -118.743564 kcal Electronic energy + Delta-G solvation = -20536.656640 eV Core-core repulsion = 16999.972835 eV Total energy + Delta-G solvation = -3536.683806 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.15835 -41.01856 -39.21926 -36.91174 -35.15024 -34.78677 -32.69941 -30.78796 -30.17591 -28.80893 -25.74404 -23.81590 -23.11398 -22.01490 -20.44230 -20.06329 -19.18575 -18.03440 -17.35034 -16.94217 -16.44085 -16.17936 -15.82548 -15.80206 -15.06333 -14.59039 -14.41693 -14.30454 -14.19184 -13.83031 -13.24905 -12.72905 -12.65674 -12.20414 -11.92369 -11.78152 -11.65107 -11.47660 -11.01003 -10.66803 -10.58891 -10.56584 -10.47313 -9.93364 -9.66172 -9.31020 -9.25688 -9.03424 -8.32777 -8.27200 -5.97662 -4.00421 0.64098 0.78749 2.38365 2.72939 3.13804 3.33650 3.38295 3.40314 3.56477 4.10577 4.36380 4.46500 4.54203 4.68843 4.93383 5.09532 5.20637 5.22876 5.37703 5.37838 5.64097 5.71269 5.79383 5.92535 6.04425 6.07735 6.20457 6.44615 6.47884 6.76194 6.93597 7.08331 7.11242 7.16113 7.70524 7.85910 7.90407 8.03161 8.44762 9.07053 9.63379 11.13627 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.045065 B = 0.002424 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.179894 B =11547.927627 C =12078.117750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.104 4.104 12 C -0.137 4.137 13 C 0.512 3.488 14 O -0.512 6.512 15 N -0.672 5.672 16 C 0.126 3.874 17 C -0.093 4.093 18 C -0.136 4.136 19 C 0.089 3.911 20 F -0.139 7.139 21 C -0.159 4.159 22 C 0.097 3.903 23 O -0.490 6.490 24 H 0.261 0.739 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.417 0.583 34 H 0.163 0.837 35 H 0.142 0.858 36 H 0.144 0.856 37 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.522 -25.173 0.929 25.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.148 4.148 11 C -0.142 4.142 12 C -0.177 4.177 13 C 0.301 3.699 14 O -0.386 6.386 15 N -0.317 5.317 16 C 0.029 3.971 17 C -0.113 4.113 18 C -0.155 4.155 19 C 0.069 3.931 20 F -0.117 7.117 21 C -0.179 4.179 22 C 0.049 3.951 23 O -0.300 6.300 24 H 0.070 0.930 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.113 0.887 32 H 0.115 0.885 33 H 0.253 0.747 34 H 0.180 0.820 35 H 0.160 0.840 36 H 0.161 0.839 37 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 4.702 -25.093 0.352 25.532 hybrid contribution 0.734 0.715 0.567 1.171 sum 5.437 -24.378 0.919 24.994 Atomic orbital electron populations 1.69958 1.06060 1.26680 1.50766 1.25042 0.94844 0.99247 0.95410 0.86667 0.79578 0.83223 0.78562 1.20266 1.21308 1.20281 1.21237 0.92945 0.91192 1.50647 0.92795 1.19089 0.94033 0.91244 0.97326 1.21653 0.99115 0.93856 1.00185 1.21489 0.96978 0.92647 1.03135 1.21844 1.00236 0.91064 1.04562 1.21441 0.88594 0.85385 0.74432 1.90682 1.14130 1.87191 1.46643 1.43732 1.11339 1.03868 1.72800 1.18243 0.93895 0.85392 0.99531 1.21306 0.93504 0.99256 0.97207 1.21158 1.01716 0.90815 1.01823 1.17426 0.91511 0.81822 1.02341 1.91504 1.79654 1.46294 1.94281 1.21114 0.93998 0.99116 1.03659 1.17702 0.86755 0.90769 0.99870 1.84841 1.24192 1.94360 1.26633 0.92950 0.96580 0.96584 0.93391 0.93373 0.91615 0.91637 0.88654 0.88487 0.74659 0.82020 0.84004 0.83854 0.75105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.67 29.54 -169.99 -5.02 16.64 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.80 9.11 -34.44 -0.31 -15.12 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.52 4.97 -27.89 -0.14 0.38 16 10 C -0.11 -2.17 5.15 -26.73 -0.14 -2.31 16 11 C -0.10 -1.72 4.50 -26.73 -0.12 -1.84 16 12 C -0.14 -1.60 5.70 -27.88 -0.16 -1.76 16 13 C 0.51 6.27 7.64 -10.99 -0.08 6.19 16 14 O -0.51 -8.09 13.15 5.54 0.07 -8.02 16 15 N -0.67 -6.39 5.29 -9.73 -0.05 -6.44 16 16 C 0.13 1.30 6.45 -83.45 -0.54 0.77 16 17 C -0.09 -1.03 8.72 -39.42 -0.34 -1.38 16 18 C -0.14 -1.34 10.02 -39.51 -0.40 -1.73 16 19 C 0.09 0.87 7.30 -39.42 -0.29 0.59 16 20 F -0.14 -1.42 17.26 2.25 0.04 -1.38 16 21 C -0.16 -1.39 9.96 -39.40 -0.39 -1.79 16 22 C 0.10 0.86 6.72 -39.08 -0.26 0.59 16 23 O -0.49 -3.38 12.92 -19.64 -0.25 -3.63 16 24 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.07 1.15 8.10 -51.93 -0.42 0.73 16 30 H 0.06 1.16 8.10 -51.93 -0.42 0.73 16 31 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.42 2.85 8.34 -40.82 -0.34 2.51 16 34 H 0.16 2.04 5.78 -52.49 -0.30 1.74 16 35 H 0.14 1.16 8.06 -52.49 -0.42 0.73 16 36 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 37 H 0.39 1.10 9.06 45.56 0.41 1.52 16 LS Contribution 324.87 15.07 4.90 4.90 Total: -1.00 -33.57 324.87 -6.85 -40.42 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -4.00 Total: -0.10 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: -3.27 Total: -15.89 kcal Atomic # 7 Polarization: -33.62 SS G_CDS: 0.68 Total: -32.94 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: -0.18 Total: -11.65 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.57 -6.85 -40.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588649264.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.321 kcal (2) G-P(sol) polarization free energy of solvation -33.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds