Wall clock time and date at job start Tue Mar 31 2020 05:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00177 * 2 1 4 4 H 1.48496 * 109.47259 * 269.99907 * 3 2 1 5 5 H 1.48498 * 109.47161 * 30.00272 * 3 2 1 6 6 H 1.48503 * 109.47433 * 149.99851 * 3 2 1 7 7 C 1.37880 * 120.00008 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00012 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99599 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46684 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46758 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.46758 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47011 * 179.97438 * 12 11 10 14 14 O 1.21291 * 119.99745 * 0.02562 * 13 12 11 15 15 N 1.34770 * 120.00273 * 179.97438 * 13 12 11 16 16 C 1.40050 * 120.00333 * 185.53385 * 15 13 12 17 17 C 1.38892 * 120.04951 * 24.82089 * 16 15 13 18 18 C 1.38139 * 120.05229 * 179.97438 * 17 16 15 19 19 C 1.38230 * 120.15661 * 0.02562 * 18 17 16 20 20 C 1.38711 * 120.10234 * 0.02562 * 19 18 17 21 21 O 1.35962 * 120.03058 * 179.70035 * 20 19 18 22 22 C 1.38774 * 119.94245 * 359.97438 * 20 19 18 23 23 F 1.35108 * 120.07432 * 180.02562 * 22 20 19 24 24 H 0.97005 * 119.99768 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.46955 * 60.00924 * 9 7 2 26 26 H 1.08998 * 109.47575 * 300.00362 * 9 7 2 27 27 H 1.08997 * 109.47253 * 59.99945 * 10 9 7 28 28 H 1.08998 * 109.47196 * 300.00331 * 10 9 7 29 29 H 1.08991 * 109.47453 * 60.00165 * 11 10 9 30 30 H 1.08998 * 109.47191 * 299.99910 * 11 10 9 31 31 H 1.09005 * 109.47134 * 59.99825 * 12 11 10 32 32 H 1.08998 * 109.47196 * 299.99907 * 12 11 10 33 33 H 0.97006 * 120.00281 * 5.53664 * 15 13 12 34 34 H 1.08005 * 119.97233 * 359.97438 * 17 16 15 35 35 H 1.08007 * 119.91664 * 180.02562 * 18 17 16 36 36 H 1.08005 * 119.95036 * 179.97438 * 19 18 17 37 37 H 0.96694 * 113.99982 * 89.99911 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 6 2.4743 -6.1500 -0.0005 13 6 1.7208 -7.4551 -0.0005 14 8 0.5079 -7.4550 -0.0015 15 7 2.3946 -8.6223 -0.0005 16 6 1.6993 -9.8323 -0.1175 17 6 0.4533 -9.8621 -0.7305 18 6 -0.2324 -11.0557 -0.8464 19 6 0.3182 -12.2235 -0.3527 20 6 1.5616 -12.2011 0.2617 21 8 2.0990 -13.3496 0.7522 22 6 2.2541 -11.0043 0.3803 23 9 3.4656 -10.9795 0.9778 24 1 -0.4850 0.8401 -0.0004 25 1 0.6240 -2.5567 -0.8904 26 1 0.6245 -2.5571 0.8896 27 1 2.8718 -3.6044 0.8894 28 1 2.8719 -3.6043 -0.8905 29 1 0.8538 -5.0446 -0.8913 30 1 0.8531 -5.0451 0.8886 31 1 3.1004 -6.0923 0.8899 32 1 3.1016 -6.0922 -0.8900 33 1 3.3613 -8.6244 0.0805 34 1 0.0202 -8.9512 -1.1169 35 1 -1.2010 -11.0763 -1.3239 36 1 -0.2210 -13.1548 -0.4447 37 1 2.6422 -13.8332 0.1149 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589844012.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:16 Heat of formation + Delta-G solvation = -116.996589 kcal Electronic energy + Delta-G solvation = -20632.715593 eV Core-core repulsion = 17096.107542 eV Total energy + Delta-G solvation = -3536.608051 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.20590 -40.77966 -39.35606 -37.20025 -35.06234 -34.78100 -32.68929 -30.54217 -30.03204 -29.10840 -25.82336 -23.74509 -23.05222 -22.09207 -20.51838 -20.05758 -19.01573 -18.08608 -17.59496 -16.89150 -16.25694 -16.19072 -15.93471 -15.73742 -15.19284 -14.74555 -14.49535 -14.24720 -14.12315 -13.73562 -12.87547 -12.69303 -12.65882 -12.33255 -12.17450 -11.77098 -11.65165 -11.21168 -11.01679 -10.81470 -10.59906 -10.53035 -10.46711 -9.92693 -9.65475 -9.27231 -9.01878 -8.98773 -8.45600 -8.32349 -5.97122 -3.99721 0.69583 0.73355 2.39111 2.65054 3.19784 3.32935 3.39144 3.42220 3.59002 3.94971 4.42392 4.48065 4.52485 4.69756 4.95698 5.12881 5.20336 5.23717 5.38380 5.43463 5.66391 5.72637 5.81348 5.95981 6.05570 6.08358 6.21120 6.45215 6.49719 6.77220 6.93912 7.03031 7.15368 7.16915 7.71556 7.86772 7.88179 8.03839 8.45501 9.07897 9.64101 11.14192 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.049156 B = 0.002450 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.475941 B =11424.470294 C =11895.012096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.104 4.104 12 C -0.137 4.137 13 C 0.515 3.485 14 O -0.509 6.509 15 N -0.675 5.675 16 C 0.142 3.858 17 C -0.116 4.116 18 C -0.089 4.089 19 C -0.141 4.141 20 C 0.093 3.907 21 O -0.487 6.487 22 C 0.033 3.967 23 F -0.133 7.133 24 H 0.260 0.740 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.048 0.952 28 H 0.047 0.953 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.415 0.585 34 H 0.160 0.840 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.023 -26.834 -2.751 27.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.148 4.148 11 C -0.142 4.142 12 C -0.177 4.177 13 C 0.305 3.695 14 O -0.383 6.383 15 N -0.320 5.320 16 C 0.045 3.955 17 C -0.136 4.136 18 C -0.108 4.108 19 C -0.161 4.161 20 C 0.047 3.953 21 O -0.297 6.297 22 C 0.011 3.989 23 F -0.111 7.111 24 H 0.070 0.930 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.114 0.886 32 H 0.116 0.884 33 H 0.251 0.749 34 H 0.178 0.822 35 H 0.157 0.843 36 H 0.156 0.844 37 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 3.776 -26.446 -2.211 26.805 hybrid contribution 1.496 0.693 -0.175 1.658 sum 5.272 -25.753 -2.386 26.395 Atomic orbital electron populations 1.69973 1.06054 1.26543 1.50883 1.25043 0.94849 0.99258 0.95433 0.86605 0.79824 0.83567 0.78054 1.20698 1.21246 1.19923 1.21276 0.92982 0.91179 1.50479 0.92746 1.19096 0.94039 0.91252 0.97341 1.21653 0.99119 0.93835 1.00205 1.21491 0.96968 0.92610 1.03170 1.21854 1.00276 0.90935 1.04635 1.21424 0.88598 0.85204 0.74311 1.90678 1.14068 1.87101 1.46405 1.43719 1.11271 1.04005 1.73043 1.17761 0.94611 0.84593 0.98564 1.21503 0.93258 1.00376 0.98464 1.21066 1.00115 0.91128 0.98473 1.21323 0.95177 0.99958 0.99620 1.18147 0.93336 0.84837 0.99001 1.84890 1.69198 1.34093 1.41496 1.17773 0.83997 0.94089 1.03061 1.91471 1.41075 1.97143 1.81446 0.93021 0.96564 0.96562 0.93365 0.93374 0.91583 0.91592 0.88562 0.88431 0.74872 0.82235 0.84319 0.84354 0.75206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.34 13.29 55.43 0.74 -26.60 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.86 9.11 -34.44 -0.31 -15.18 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.11 -2.20 5.15 -26.73 -0.14 -2.33 16 11 C -0.10 -1.76 4.50 -26.73 -0.12 -1.88 16 12 C -0.14 -1.67 5.70 -27.88 -0.16 -1.83 16 13 C 0.52 6.68 7.64 -10.99 -0.08 6.59 16 14 O -0.51 -8.30 13.14 5.55 0.07 -8.22 16 15 N -0.68 -7.16 5.31 -9.82 -0.05 -7.21 16 16 C 0.14 1.60 6.43 -83.62 -0.54 1.06 16 17 C -0.12 -1.28 8.72 -39.38 -0.34 -1.63 16 18 C -0.09 -0.77 10.03 -39.62 -0.40 -1.16 16 19 C -0.14 -1.14 9.98 -39.41 -0.39 -1.54 16 20 C 0.09 0.88 6.71 -39.21 -0.26 0.62 16 21 O -0.49 -4.04 13.37 -19.62 -0.26 -4.30 16 22 C 0.03 0.36 7.31 -39.14 -0.29 0.07 16 23 F -0.13 -1.48 16.66 2.25 0.04 -1.44 16 24 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 30 H 0.07 1.19 8.10 -51.93 -0.42 0.77 16 31 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.41 3.28 8.45 -40.82 -0.35 2.94 16 34 H 0.16 1.99 5.78 -52.48 -0.30 1.69 16 35 H 0.14 0.87 8.06 -52.48 -0.42 0.44 16 36 H 0.14 0.80 8.06 -52.48 -0.42 0.38 16 37 H 0.39 1.26 9.06 45.56 0.41 1.67 16 LS Contribution 324.86 15.07 4.90 4.90 Total: -1.00 -34.54 324.86 -6.87 -41.41 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -4.00 Total: 0.03 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: -3.27 Total: -15.31 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: 0.68 Total: -33.81 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: -0.19 Total: -12.53 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.44 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.54 -6.87 -41.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589844012.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.586 kcal (2) G-P(sol) polarization free energy of solvation -34.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds