Wall clock time and date at job start Tue Mar 31 2020 05:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00177 * 2 1 4 4 H 1.48496 * 109.47259 * 269.99907 * 3 2 1 5 5 H 1.48498 * 109.47161 * 30.00272 * 3 2 1 6 6 H 1.48503 * 109.47433 * 149.99851 * 3 2 1 7 7 C 1.37880 * 120.00008 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00012 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99599 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46684 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46758 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.46758 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47011 * 179.97438 * 12 11 10 14 14 O 1.21291 * 119.99745 * 0.02562 * 13 12 11 15 15 N 1.34770 * 120.00273 * 179.97438 * 13 12 11 16 16 C 1.40050 * 120.00333 * 185.53385 * 15 13 12 17 17 C 1.38892 * 120.04951 * 24.82089 * 16 15 13 18 18 C 1.38139 * 120.05229 * 179.97438 * 17 16 15 19 19 C 1.38230 * 120.15661 * 0.02562 * 18 17 16 20 20 C 1.38711 * 120.10234 * 0.02562 * 19 18 17 21 21 O 1.35962 * 120.03058 * 179.70035 * 20 19 18 22 22 C 1.38774 * 119.94245 * 359.97438 * 20 19 18 23 23 F 1.35108 * 120.07432 * 180.02562 * 22 20 19 24 24 H 0.97005 * 119.99768 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.46955 * 60.00924 * 9 7 2 26 26 H 1.08998 * 109.47575 * 300.00362 * 9 7 2 27 27 H 1.08997 * 109.47253 * 59.99945 * 10 9 7 28 28 H 1.08998 * 109.47196 * 300.00331 * 10 9 7 29 29 H 1.08991 * 109.47453 * 60.00165 * 11 10 9 30 30 H 1.08998 * 109.47191 * 299.99910 * 11 10 9 31 31 H 1.09005 * 109.47134 * 59.99825 * 12 11 10 32 32 H 1.08998 * 109.47196 * 299.99907 * 12 11 10 33 33 H 0.97006 * 120.00281 * 5.53664 * 15 13 12 34 34 H 1.08005 * 119.97233 * 359.97438 * 17 16 15 35 35 H 1.08007 * 119.91664 * 180.02562 * 18 17 16 36 36 H 1.08005 * 119.95036 * 179.97438 * 19 18 17 37 37 H 0.96694 * 113.99982 * 89.99911 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 6 2.4743 -6.1500 -0.0005 13 6 1.7208 -7.4551 -0.0005 14 8 0.5079 -7.4550 -0.0015 15 7 2.3946 -8.6223 -0.0005 16 6 1.6993 -9.8323 -0.1175 17 6 0.4533 -9.8621 -0.7305 18 6 -0.2324 -11.0557 -0.8464 19 6 0.3182 -12.2235 -0.3527 20 6 1.5616 -12.2011 0.2617 21 8 2.0990 -13.3496 0.7522 22 6 2.2541 -11.0043 0.3803 23 9 3.4656 -10.9795 0.9778 24 1 -0.4850 0.8401 -0.0004 25 1 0.6240 -2.5567 -0.8904 26 1 0.6245 -2.5571 0.8896 27 1 2.8718 -3.6044 0.8894 28 1 2.8719 -3.6043 -0.8905 29 1 0.8538 -5.0446 -0.8913 30 1 0.8531 -5.0451 0.8886 31 1 3.1004 -6.0923 0.8899 32 1 3.1016 -6.0922 -0.8900 33 1 3.3613 -8.6244 0.0805 34 1 0.0202 -8.9512 -1.1169 35 1 -1.2010 -11.0763 -1.3239 36 1 -0.2210 -13.1548 -0.4447 37 1 2.6422 -13.8332 0.1149 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589844012.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:15 Heat of formation + Delta-G solvation = -141.080367 kcal Electronic energy + Delta-G solvation = -20633.759944 eV Core-core repulsion = 17096.107542 eV Total energy + Delta-G solvation = -3537.652402 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.01106 -41.68956 -40.13493 -37.97157 -36.64323 -35.70472 -34.63102 -31.87804 -30.86036 -30.21945 -27.50608 -24.95758 -23.94781 -23.34249 -21.80280 -21.41960 -19.76047 -18.93517 -18.46199 -18.32196 -17.75013 -17.11388 -16.86097 -16.69943 -16.50301 -15.90335 -15.66821 -15.42401 -15.15115 -14.59281 -14.52638 -13.97996 -13.61539 -13.46455 -13.34219 -13.31937 -12.99627 -12.81982 -12.35106 -12.16465 -12.15008 -11.87210 -11.66413 -11.36645 -11.34276 -11.14273 -10.79292 -10.54583 -9.72686 -9.25776 -8.18676 -6.30481 -0.05948 0.00227 1.40613 1.42581 1.44719 1.53583 1.79132 2.41999 2.46816 2.88953 3.14251 3.27915 3.55205 3.80592 3.93798 3.99250 4.12914 4.28513 4.36586 4.63567 4.66104 4.76425 4.81978 4.87132 4.96789 5.09153 5.18158 5.22535 5.32895 5.35131 5.38993 5.57364 5.74291 5.79044 5.88956 6.20682 6.26065 6.69067 6.88196 6.95241 7.39126 8.93494 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.049156 B = 0.002450 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.475941 B =11424.470294 C =11895.012096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.007 4.007 3 Si 0.968 3.032 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.541 4.541 8 H 0.065 0.935 9 C 0.018 3.982 10 C -0.096 4.096 11 C -0.097 4.097 12 C -0.126 4.126 13 C 0.516 3.484 14 O -0.550 6.550 15 N -0.663 5.663 16 C 0.124 3.876 17 C -0.136 4.136 18 C -0.083 4.083 19 C -0.133 4.133 20 C 0.095 3.905 21 O -0.496 6.496 22 C 0.019 3.981 23 F -0.138 7.138 24 H 0.263 0.737 25 H -0.014 1.014 26 H -0.015 1.015 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.049 0.951 30 H 0.045 0.955 31 H 0.122 0.878 32 H 0.127 0.873 33 H 0.428 0.572 34 H 0.141 0.859 35 H 0.163 0.837 36 H 0.168 0.832 37 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.871 -28.096 -2.941 29.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.204 4.204 3 Si 0.792 3.208 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.184 1.184 7 C -0.579 4.579 8 H 0.084 0.916 9 C -0.019 4.019 10 C -0.134 4.134 11 C -0.135 4.135 12 C -0.165 4.165 13 C 0.307 3.693 14 O -0.427 6.427 15 N -0.309 5.309 16 C 0.027 3.973 17 C -0.156 4.156 18 C -0.101 4.101 19 C -0.152 4.152 20 C 0.049 3.951 21 O -0.310 6.310 22 C -0.003 4.003 23 F -0.117 7.117 24 H 0.071 0.929 25 H 0.005 0.995 26 H 0.003 0.997 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.140 0.860 32 H 0.145 0.855 33 H 0.267 0.733 34 H 0.159 0.841 35 H 0.180 0.820 36 H 0.185 0.815 37 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 5.681 -27.754 -2.412 28.432 hybrid contribution 0.873 0.966 -0.122 1.308 sum 6.555 -26.788 -2.534 27.694 Atomic orbital electron populations 1.70127 1.08021 1.27728 1.51928 1.26078 0.95781 1.03692 0.94851 0.85400 0.78665 0.78171 0.78520 1.19687 1.21003 1.18404 1.21763 0.93736 0.92278 1.50149 0.91632 1.19059 0.94703 0.93714 0.94412 1.21447 0.97844 0.92705 1.01401 1.21267 0.97423 0.93287 1.01501 1.21721 0.99104 0.88376 1.07321 1.21482 0.88062 0.86011 0.73757 1.90676 1.15808 1.87675 1.48584 1.43508 1.11862 1.03359 1.72136 1.17888 0.95040 0.84850 0.99494 1.21487 0.93767 1.00747 0.99606 1.21349 1.00692 0.90387 0.97719 1.21617 0.94554 1.00795 0.98204 1.18306 0.93652 0.84816 0.98337 1.84832 1.69704 1.33681 1.42750 1.17915 0.84147 0.94485 1.03762 1.91451 1.41359 1.97197 1.81645 0.92863 0.99511 0.99690 0.92153 0.91915 0.93185 0.93602 0.85990 0.85508 0.73338 0.84143 0.81980 0.81480 0.72580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.70 13.29 21.45 0.28 -58.41 16 2 C -0.01 -0.40 5.46 84.66 0.46 0.06 16 3 Si 0.97 44.62 29.54 68.60 2.03 46.64 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 6 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 7 C -0.54 -31.12 9.11 25.60 0.23 -30.89 16 8 H 0.07 3.54 7.74 -2.91 -0.02 3.51 16 9 C 0.02 0.99 4.97 29.85 0.15 1.13 16 10 C -0.10 -3.80 5.15 30.60 0.16 -3.65 16 11 C -0.10 -3.28 4.50 30.60 0.14 -3.14 16 12 C -0.13 -2.85 5.70 29.85 0.17 -2.68 16 13 C 0.52 13.22 7.64 87.66 0.67 13.89 16 14 O -0.55 -18.54 13.14 -3.06 -0.04 -18.58 16 15 N -0.66 -13.54 5.31 -303.38 -1.61 -15.15 16 16 C 0.12 2.74 6.43 38.14 0.25 2.98 16 17 C -0.14 -3.00 8.72 22.40 0.20 -2.80 16 18 C -0.08 -1.31 10.03 22.24 0.22 -1.08 16 19 C -0.13 -1.82 9.98 22.38 0.22 -1.60 16 20 C 0.10 1.62 6.71 22.51 0.15 1.77 16 21 O -0.50 -7.07 13.37 -93.12 -1.24 -8.32 16 22 C 0.02 0.40 7.31 22.56 0.16 0.56 16 23 F -0.14 -2.91 16.66 44.97 0.75 -2.16 16 24 H 0.26 15.41 8.31 -92.70 -0.77 14.64 16 25 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 26 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 27 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.05 1.83 8.10 -2.39 -0.02 1.81 16 30 H 0.05 1.72 8.10 -2.39 -0.02 1.70 16 31 H 0.12 2.20 8.14 -2.38 -0.02 2.18 16 32 H 0.13 2.18 8.14 -2.39 -0.02 2.17 16 33 H 0.43 6.12 8.45 -92.70 -0.78 5.34 16 34 H 0.14 3.68 5.78 -2.91 -0.02 3.66 16 35 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 36 H 0.17 1.31 8.06 -2.91 -0.02 1.29 16 37 H 0.41 1.59 9.06 -74.06 -0.67 0.92 16 Total: -1.00 -76.91 324.86 3.00 -73.91 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -0.35 Total: 7.52 kcal Atomic # 6 Polarization: -28.63 SS G_CDS: 3.18 Total: -25.44 kcal Atomic # 7 Polarization: -72.24 SS G_CDS: -1.33 Total: -73.57 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -1.28 Total: -26.90 kcal Atomic # 9 Polarization: -2.91 SS G_CDS: 0.75 Total: -2.16 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Total: -76.91 3.00 -73.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589844012.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.169 kcal (2) G-P(sol) polarization free energy of solvation -76.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds