Wall clock time and date at job start Tue Mar 31 2020 05:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00054 * 2 1 4 4 H 1.48500 * 109.47117 * 239.99582 * 3 2 1 5 5 H 1.48503 * 109.47340 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.46980 * 119.99975 * 3 2 1 7 7 C 1.37880 * 119.99705 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99825 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00062 * 0.02562 * 7 2 1 10 10 O 1.42897 * 109.46999 * 179.97438 * 9 7 2 11 11 C 1.42900 * 113.99713 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.46584 * 180.02562 * 11 10 9 13 13 N 1.46892 * 109.47510 * 65.00257 * 12 11 10 14 14 C 1.44770 * 111.00195 * 193.16788 * 13 12 11 15 15 C 1.51117 * 116.04306 * 308.18059 * 14 13 12 16 16 C 1.53444 * 110.72847 * 288.75653 * 15 14 13 17 17 C 1.52336 * 107.27881 * 79.21269 * 16 15 14 18 18 S 1.75680 * 125.34365 * 114.54415 * 17 16 15 19 19 C 1.75842 * 90.84984 * 179.43614 * 18 17 16 20 20 C 1.33089 * 109.54207 * 0.20369 * 19 18 17 21 21 C 1.33520 * 124.31579 * 294.51785 * 17 16 15 22 22 C 1.46846 * 111.00485 * 66.03859 * 13 12 11 23 23 H 0.97005 * 119.99923 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.46841 * 59.99750 * 9 7 2 25 25 H 1.09000 * 109.47005 * 299.99999 * 9 7 2 26 26 H 1.08989 * 109.47433 * 59.99840 * 11 10 9 27 27 H 1.08998 * 109.46900 * 299.99597 * 11 10 9 28 28 H 1.08997 * 109.47225 * 304.99323 * 12 11 10 29 29 H 1.09007 * 109.46662 * 185.00123 * 12 11 10 30 30 H 1.08991 * 108.17372 * 69.90563 * 14 13 12 31 31 H 1.09002 * 108.17132 * 186.71060 * 14 13 12 32 32 H 1.09002 * 109.23822 * 168.42139 * 15 14 13 33 33 H 1.09003 * 109.19795 * 49.06906 * 15 14 13 34 34 H 1.08999 * 109.89300 * 319.77089 * 16 15 14 35 35 H 1.08994 * 109.89289 * 198.65637 * 16 15 14 36 36 H 1.08005 * 125.22875 * 180.18241 * 19 18 17 37 37 H 1.07997 * 122.26858 * 180.18176 * 20 19 18 38 38 H 1.08999 * 109.84436 * 283.89728 * 22 13 12 39 39 H 1.09007 * 109.89469 * 162.95132 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 8 2.1795 -3.5854 0.0005 11 6 1.5649 -4.8754 0.0000 12 6 2.6479 -5.9562 0.0006 13 7 3.4070 -5.8880 1.2564 14 6 4.6199 -6.6740 1.1728 15 6 4.4535 -8.1038 0.7126 16 6 3.7712 -8.9476 1.7974 17 6 2.2784 -8.6519 1.7285 18 16 1.0334 -9.8067 1.2781 19 6 -0.2153 -8.5905 1.5101 20 6 0.3447 -7.4440 1.8886 21 6 1.7324 -7.4655 2.0061 22 6 2.5603 -6.2411 2.4031 23 1 -0.4850 0.8401 -0.0004 24 1 0.6246 -2.5571 -0.8897 25 1 0.6239 -2.5567 0.8903 26 1 0.9450 -4.9822 -0.8902 27 1 0.9445 -4.9827 0.8897 28 1 3.3220 -5.7956 -0.8407 29 1 2.1819 -6.9375 -0.0894 30 1 5.3028 -6.1733 0.4867 31 1 5.0834 -6.6898 2.1592 32 1 5.4338 -8.5266 0.4925 33 1 3.8448 -8.1208 -0.1915 34 1 4.1586 -8.6738 2.7787 35 1 3.9486 -10.0065 1.6099 36 1 -1.2740 -8.7494 1.3670 37 1 -0.2374 -6.5572 2.0910 38 1 1.8984 -5.4093 2.6443 39 1 3.1837 -6.4796 3.2649 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590160108.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:27 Heat of formation + Delta-G solvation = -10.667720 kcal Electronic energy + Delta-G solvation = -20225.982030 eV Core-core repulsion = 17260.197921 eV Total energy + Delta-G solvation = -2965.784109 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.11766 -36.74222 -36.06429 -33.62590 -32.56770 -30.33102 -29.40979 -26.85703 -25.77170 -25.21009 -22.73958 -22.11578 -21.76118 -19.81997 -18.24432 -17.34400 -16.35954 -15.97211 -15.78162 -15.60735 -14.87353 -14.38142 -14.26949 -13.98198 -13.80438 -13.40426 -12.99413 -12.73845 -12.59583 -12.43041 -11.88004 -11.70477 -11.49548 -11.40954 -11.20820 -11.09231 -10.84771 -10.75079 -10.67421 -10.56888 -10.30954 -9.92190 -9.02185 -8.72061 -8.64533 -8.44471 -8.05978 -7.97300 -6.04026 -4.04757 0.95453 1.56726 1.90790 2.64531 3.37010 3.39125 3.43590 4.20407 4.41442 4.51333 4.72504 4.78397 4.90677 4.98441 5.16613 5.28558 5.32368 5.44005 5.48114 5.54813 5.55958 5.66941 5.74769 5.78756 5.91633 5.93786 6.05238 6.13323 6.19275 6.22473 6.32342 6.41308 6.52420 7.18550 7.28905 7.44608 7.52090 7.87816 8.25048 8.71348 9.10343 9.59913 11.07637 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.028132 B = 0.003966 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.055978 B = 7058.802052 C = 7714.582592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.055 3.945 3 Si 0.907 3.093 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.510 4.510 8 H 0.066 0.934 9 C 0.195 3.805 10 O -0.381 6.381 11 C 0.069 3.931 12 C 0.061 3.939 13 N -0.513 5.513 14 C 0.057 3.943 15 C -0.152 4.152 16 C -0.044 4.044 17 C -0.177 4.177 18 S 0.075 5.925 19 C -0.215 4.215 20 C -0.118 4.118 21 C -0.130 4.130 22 C 0.120 3.880 23 H 0.263 0.737 24 H 0.001 0.999 25 H 0.002 0.998 26 H 0.034 0.966 27 H 0.036 0.964 28 H 0.075 0.925 29 H 0.049 0.951 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.163 0.837 37 H 0.141 0.859 38 H 0.092 0.908 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.157 -21.119 4.039 21.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.145 4.145 3 Si 0.734 3.266 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.548 4.548 8 H 0.084 0.916 9 C 0.121 3.879 10 O -0.300 6.300 11 C -0.009 4.009 12 C -0.066 4.066 13 N -0.233 5.233 14 C -0.072 4.072 15 C -0.192 4.192 16 C -0.083 4.083 17 C -0.295 4.295 18 S 0.340 5.660 19 C -0.350 4.350 20 C -0.148 4.148 21 C -0.144 4.144 22 C -0.010 4.010 23 H 0.073 0.927 24 H 0.018 0.982 25 H 0.020 0.980 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.094 0.906 29 H 0.066 0.934 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.180 0.820 37 H 0.158 0.842 38 H 0.110 0.890 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.317 -22.007 3.657 22.723 hybrid contribution -0.545 1.403 0.222 1.522 sum 3.772 -20.604 3.879 21.302 Atomic orbital electron populations 1.69962 1.06096 1.27093 1.50911 1.24941 0.94942 0.99350 0.95299 0.86416 0.79309 0.82026 0.78829 1.20076 1.21260 1.20012 1.21040 0.94051 0.89398 1.50330 0.91584 1.20145 0.88858 0.83964 0.94982 1.87938 1.34658 1.12398 1.95006 1.22212 0.93957 0.86052 0.98648 1.22167 0.96131 0.96628 0.91701 1.61211 1.06289 1.52718 1.03109 1.21398 0.92985 0.90601 1.02186 1.21924 1.00983 0.97483 0.98792 1.20603 0.87572 1.00012 1.00139 1.24749 0.99283 0.96412 1.09017 1.84082 0.97404 1.15509 1.69026 1.25397 1.02614 0.96772 1.10203 1.20289 0.94145 0.98754 1.01623 1.20437 0.94263 0.96457 1.03233 1.21500 0.94189 0.91956 0.93364 0.92738 0.98171 0.98011 0.94798 0.94565 0.90612 0.93359 0.90759 0.91454 0.90799 0.91423 0.89939 0.91046 0.81991 0.84164 0.88994 0.90127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.37 13.29 55.43 0.74 -26.64 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 22.20 29.54 -169.99 -5.02 17.18 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.51 -15.33 9.43 -34.44 -0.32 -15.66 16 8 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 9 C 0.20 5.48 5.69 36.01 0.20 5.69 16 10 O -0.38 -9.45 10.27 -35.23 -0.36 -9.82 16 11 C 0.07 1.34 5.97 37.16 0.22 1.56 16 12 C 0.06 0.97 4.01 -3.83 -0.02 0.95 16 13 N -0.51 -7.67 4.69 -237.63 -1.11 -8.78 16 14 C 0.06 0.68 5.08 -5.91 -0.03 0.65 16 15 C -0.15 -1.48 5.43 -27.45 -0.15 -1.63 16 16 C -0.04 -0.41 5.94 -26.84 -0.16 -0.57 16 17 C -0.18 -2.01 5.06 -35.15 -0.18 -2.19 16 18 S 0.08 0.79 23.33 -107.50 -2.51 -1.72 16 19 C -0.21 -2.38 11.22 28.94 0.32 -2.06 16 20 C -0.12 -1.46 9.28 -40.98 -0.38 -1.84 16 21 C -0.13 -1.63 3.22 -104.71 -0.34 -1.97 16 22 C 0.12 1.63 5.37 -3.83 -0.02 1.61 16 23 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 24 H 0.00 0.01 8.14 -51.93 -0.42 -0.41 16 25 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 26 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.04 0.68 5.69 -51.93 -0.30 0.38 16 28 H 0.08 1.23 8.03 -51.93 -0.42 0.81 16 29 H 0.05 0.71 4.99 -51.93 -0.26 0.46 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.72 7.57 -51.93 -0.39 0.32 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.75 6.40 -51.93 -0.33 0.42 16 34 H 0.08 0.73 7.88 -51.93 -0.41 0.32 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.16 1.46 8.06 -52.48 -0.42 1.04 16 37 H 0.14 1.72 7.82 -52.49 -0.41 1.31 16 38 H 0.09 1.39 7.17 -51.93 -0.37 1.02 16 39 H 0.08 0.96 7.76 -51.92 -0.40 0.56 16 LS Contribution 319.95 15.07 4.82 4.82 Total: -1.00 -31.93 319.95 -10.18 -42.11 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: -5.80 Total: -3.24 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: -0.94 Total: -13.92 kcal Atomic # 7 Polarization: -35.04 SS G_CDS: -0.38 Total: -35.42 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: -0.36 Total: -9.82 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Atomic # 16 Polarization: 0.79 SS G_CDS: -2.51 Total: -1.72 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.93 -10.18 -42.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590160108.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.442 kcal (2) G-P(sol) polarization free energy of solvation -31.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds